Diff of the two buildlogs: -- --- b1/build.log 2021-07-23 00:54:07.401290469 +0000 +++ b2/build.log 2021-07-23 09:56:22.494184554 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Aug 24 14:02:02 -12 2022 -I: pbuilder-time-stamp: 1661392922 +I: Current time: Fri Jul 23 14:54:55 +14 2021 +I: pbuilder-time-stamp: 1627001695 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./seqan2_2.4.0+dfsg-14.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.v4D3tC92/trustedkeys.kbx': General error -gpgv: Signature made Sat Feb 13 17:44:42 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.807jIzwX/trustedkeys.kbx': General error +gpgv: Signature made Sun Feb 14 19:44:42 2021 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key @@ -39,135 +39,169 @@ dpkg-source: info: applying python3 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/23686/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/22458/tmp/hooks/D01_modify_environment starting +debug: Running on codethink14-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/22458/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/22458/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='23686' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=22458 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.eMFwU7OlPc/pbuilderrc_Nzdz --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.eMFwU7OlPc/b1 --logfile b1/build.log seqan2_2.4.0+dfsg-14.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.eMFwU7OlPc/pbuilderrc_5NzA --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.eMFwU7OlPc/b2 --logfile b2/build.log --extrapackages usrmerge seqan2_2.4.0+dfsg-14.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink13-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Feb 7 2021 more - -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount - -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 23 03:48 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Feb 7 2021 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/23686/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Feb 8 04:38 more + -rwsr-xr-x 1 root root 51360 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 14496 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 23 14:55 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 22 23:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Feb 8 04:38 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/22458/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -295,7 +329,7 @@ Get: 74 http://deb.debian.org/debian bullseye/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libbz2-dev arm64 1.0.8-4 [31.5 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] -Fetched 43.1 MB in 1s (37.5 MB/s) +Fetched 43.1 MB in 1s (41.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -618,8 +652,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1229 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 41267 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/seqan2-2.4.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan2_2.4.0+dfsg-14_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/seqan2-2.4.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqan2_2.4.0+dfsg-14_source.changes dpkg-buildpackage: info: source package seqan2 dpkg-buildpackage: info: source version 2.4.0+dfsg-14 dpkg-buildpackage: info: source distribution unstable @@ -1135,103 +1206,103 @@ make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/depend -make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles/seqan_library.dir/DependInfo.cmake --color= -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend +make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake --color= +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake --color= make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake --color= -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles/seqan_library.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles/seqan_library.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles/seqan_library.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/depend.internal". +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake --color= +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend Scanning dependencies of target seqan_library make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend.internal". +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend.internal". make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'CMakeFiles/seqan_library.dir/build'. make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend.internal". +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend.internal". [ 0%] Built target seqan_library make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend.internal". +Scanning dependencies of target pair_align_global_1110 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake --color= -Scanning dependencies of target pair_align_global_1111 +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build +Scanning dependencies of target pair_align_global_1101 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend.internal". +Scanning dependencies of target pair_align_global_0000 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend.internal". -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build +[ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp +[ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o +[ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp +Scanning dependencies of target pair_align_global_0001 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target pair_align_global_1001 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build -Scanning dependencies of target pair_align_global_1101 -Scanning dependencies of target pair_align_global_1110 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build -Scanning dependencies of target pair_align_global_0000 +[ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp +[ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp +Scanning dependencies of target pair_align_global_1111 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp -[ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp Scanning dependencies of target pair_align_global_1011 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build -[ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp -[ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -Scanning dependencies of target pair_align_global_0001 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build Scanning dependencies of target mason_sim make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/mason2/external_split_merge.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, @@ -1349,8 +1420,9 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -1407,9 +1479,8 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -1431,6 +1502,29 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -1524,9 +1618,8 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -1554,8 +1647,9 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -1607,21 +1701,21 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, @@ -1630,6 +1724,13 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -1743,36 +1844,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, @@ -1899,10 +1970,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -1933,10 +2004,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -1962,15 +2033,16 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2001,10 +2073,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2035,10 +2107,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2064,16 +2136,15 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2099,16 +2170,15 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2139,10 +2209,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2168,15 +2238,16 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2208,10 +2279,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2243,10 +2314,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2278,10 +2349,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2313,10 +2384,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2348,10 +2419,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2383,10 +2454,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2453,10 +2524,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2488,10 +2559,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2523,10 +2594,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2558,10 +2629,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2587,7 +2658,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -2622,16 +2693,16 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2698,10 +2769,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2733,10 +2804,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2768,10 +2839,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2803,10 +2874,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2838,10 +2909,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2873,10 +2944,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -2943,10 +3014,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -3013,10 +3084,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig<>; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig<>; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig<>]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -3048,10 +3119,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -3347,7 +3418,7 @@ 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 0%] Built target pair_align_global_0000 +[ 0%] Built target pair_align_global_1110 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake --color= @@ -3360,7 +3431,7 @@ [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 0%] Built target pair_align_global_1101 +[ 0%] Built target pair_align_global_0000 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake --color= @@ -3373,7 +3444,7 @@ [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 0%] Built target pair_align_global_1110 +[ 0%] Built target pair_align_global_1101 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake --color= @@ -3385,6 +3456,19 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 0%] Built target pair_align_global_1001 +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend.internal". +Scanning dependencies of target pair_align_global_0100 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -3468,19 +3552,6 @@ 117 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 0%] Built target pair_align_global_1001 -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend.internal". -Scanning dependencies of target pair_align_global_0100 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 0%] Built target pair_align_global_0001 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' @@ -3493,65 +3564,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_1111 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend @@ -3565,29 +3577,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -3617,6 +3606,13 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Built target pair_align_global_1011 +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -3646,6 +3642,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +Scanning dependencies of target pair_align_global_0111 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -3729,8 +3731,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 1%] Built target pair_align_global_1011 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, @@ -3754,24 +3754,17 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -[ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_454.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -3796,9 +3789,38 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' @@ -3825,6 +3847,29 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -3859,25 +3904,17 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_base.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -3902,15 +3939,16 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -3971,17 +4009,12 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -4000,13 +4033,38 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +[ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_454.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -4076,9 +4134,8 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' @@ -4111,11 +4168,17 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -4140,16 +4203,16 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -4210,9 +4273,8 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -4240,17 +4302,12 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -4275,11 +4332,16 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -4327,12 +4389,17 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -4351,21 +4418,61 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, @@ -4374,6 +4481,13 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -4415,7 +4529,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -4450,8 +4564,9 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' @@ -4484,16 +4599,15 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -4519,15 +4633,16 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -4553,16 +4668,16 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -4588,16 +4703,16 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -4682,16 +4797,16 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -4717,16 +4832,16 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -4746,6 +4861,88 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, @@ -4810,16 +5007,50 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -4839,25 +5070,15 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:49, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_454.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' @@ -4890,16 +5111,15 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -4931,6 +5151,41 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' @@ -4966,6 +5221,41 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' @@ -4989,10 +5279,45 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:49, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_base.cpp:35: + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_454.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] 320 | const_cast(indexText(me).data_begin) @@ -5001,30 +5326,37 @@ 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_454.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_454.cpp:35: + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_454.cpp:35: + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -5034,16 +5366,16 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -5067,6 +5399,34 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_454.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_454.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_454.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_454.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' @@ -5115,6 +5475,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_base.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:49, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, @@ -5144,41 +5517,6 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_base.cpp:35: @@ -5232,8 +5570,6 @@ | ^~~~~~~~ [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_genome.cpp -[ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_illumina.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_genome.h:45, @@ -5391,6 +5727,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_illumina.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:49, @@ -5577,318 +5915,60 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Built target pair_align_global_0100 +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend.internal". +Scanning dependencies of target pair_align_global_0110 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp -[ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:49, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, - from /build/seqan2-2.4.0+dfsg/apps/mason2/genomic_variants.h:52, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:44, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void]': -/build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:153:56: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:141:20: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 141 | _cargo() - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:98:7: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = std::mersenne_twister_engine; TCigarString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:153:64: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:141:20: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void]' -/build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:153:56: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:663:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(seqan::ModifiedString&, seqan::Tag) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::ModView > >; TTagSpec = seqan::Rooted_; typename seqan::Iterator, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::ModView > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TTagSpec = seqan::Standard_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::ModView > > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:59:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = std::mersenne_twister_engine; TCigarString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:153:64: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 478 | return TIterator(me, end(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:41, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Vcf_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:167:52: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:40, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:41, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:41, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:40, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:41, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:41, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:40, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:41, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:40, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Vcf_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:167:52: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:40, - from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Built target pair_align_global_0101 +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend.internal". -Scanning dependencies of target pair_align_global_0111 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend.internal". make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build +[ 1%] Built target pair_align_global_1100 +Scanning dependencies of target pair_align_global_1000 +make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend.internal". +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp +Scanning dependencies of target pair_align_lcs +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Built target pair_align_global_0010 +make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend.internal". +Scanning dependencies of target pair_align_local +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -5971,6 +6051,32 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Built target pair_align_global_1010 +make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/param_chooser /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend.internal". +Scanning dependencies of target test_funcs_param_chooser +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Building CXX object apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Built target pair_align_global_0011 +make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/param_chooser /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/depend.internal". +Scanning dependencies of target param_chooser +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Building CXX object apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -5982,10 +6088,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -6017,10 +6123,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -6040,6 +6146,17 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:49, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -6052,98 +6169,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 2%] Linking CXX static library libmason_sim.a -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1 -/usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -/usr/bin/ranlib libmason_sim.a -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target mason_sim -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend.internal". -Scanning dependencies of target pair_align_global_0110 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -6168,7 +6197,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -6181,14 +6210,14 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -6198,69 +6227,11 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -6279,52 +6250,30 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target pair_align_global_0100 -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend.internal". -Scanning dependencies of target pair_align_global_1000 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void]': +/build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:153:56: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:141:20: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 141 | _cargo() + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, @@ -6332,18 +6281,13 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -6351,30 +6295,17 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target pair_align_global_0101 -make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend.internal". -Scanning dependencies of target pair_align_lcs -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -6410,101 +6341,15 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target pair_align_global_1100 -make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend.internal". -Scanning dependencies of target pair_align_local -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target pair_align_global_0010 -make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/param_chooser /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend.internal". -Scanning dependencies of target test_funcs_param_chooser -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Building CXX object apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target pair_align_global_0011 -make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/param_chooser /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/depend.internal". -Scanning dependencies of target param_chooser -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Building CXX object apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target pair_align_global_1010 -make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/depend.internal". -Scanning dependencies of target rabema_do_search -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Building CXX object apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -6526,36 +6371,48 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:98:7: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = std::mersenne_twister_engine; TCigarString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:153:64: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, @@ -6579,12 +6436,30 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:141:20: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void]' +/build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:153:56: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -6594,26 +6469,25 @@ 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' @@ -6624,25 +6498,56 @@ 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:663:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(seqan::ModifiedString&, seqan::Tag) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::ModView > >; TTagSpec = seqan::Rooted_; typename seqan::Iterator, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::ModView > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TTagSpec = seqan::Standard_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >, seqan::ModView > > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:59:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = std::mersenne_twister_engine; TCigarString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:153:64: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 478 | return TIterator(me, end(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:46, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' @@ -6654,10 +6559,10 @@ 443 | return me; | ^~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/simulate_sanger.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ @@ -6667,15 +6572,16 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); @@ -6729,18 +6635,17 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:41:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -6748,14 +6653,14 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -6789,38 +6694,14 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' @@ -6853,8 +6734,9 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' @@ -6881,49 +6763,37 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:41:60: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' @@ -6991,40 +6861,6 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:41:70: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lcs.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' @@ -7090,23 +6926,36 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Built target pair_align_global_0111 +make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/depend.internal". +Scanning dependencies of target rabema_do_search +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Building CXX object apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:41:70: required from here +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -7114,14 +6963,14 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -7164,20 +7013,40 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:7: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' - 143 | operator = (Segment const & source) +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:41:70: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:30, from /build/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:34, @@ -7189,28 +7058,13 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:254:100: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -7245,8 +7099,8 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' @@ -7274,118 +7128,76 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment, seqan::InfixSegment>; TTagSpec = seqan::Standard_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::InfixSegment>, seqan::AdaptorIterator > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:257:79: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 478 | return TIterator(me, end(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:7: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:513:97: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment, seqan::InfixSegment>; TTagSpec = seqan::Standard_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::InfixSegment>, seqan::AdaptorIterator > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:257:118: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 343 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:7: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::Tag; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::Tag; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:41:70: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:44, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_local.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:86:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:184:19: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score, seqan::Tag > >; TSeqFile = std::__cxx11::basic_string; TMethod = seqan::Tag; TDiag = int; TOutfile = std::__cxx11::basic_string]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:276:42: required from 'void _initAlignParams(const Options&, TScore&, const TAlgorithm&, TAlignSpec) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >; TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:289:31: required from 'void _initScoreMatrix(const Options&, seqan::Dna5, const TAlgorithm&, const TAlignSpec&) [with TAlgorithm = seqan::Tag; TAlignSpec = seqan::AlignConfig; seqan::Dna5 = seqan::SimpleType]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:364:52: required from 'void pairAlignConfig(const Options&, const TAlgorithm&, const TSpec&) [with TAlgorithm = seqan::Tag; TSpec = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:73:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:44, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_global.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -7421,79 +7233,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:76, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:44, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(seqan::Pattern >&, TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(seqan::Pattern >&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(seqan::Pattern&, TNeedle2&&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' -/build/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:99:24: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' -/build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:27:89: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 625 | return ModifiedString(host); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:44, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:7: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Reference > >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:840:14: required from 'void seqan::setValue(seqan::Holder >&, const TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(seqan::Pattern&, TNeedle2&&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' -/build/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:99:24: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' -/build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:27:89: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(seqan::Pattern >&, TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(seqan::Pattern >&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(seqan::Pattern&, TNeedle2&&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' -/build/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:99:24: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' -/build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:27:89: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -7601,47 +7340,47 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:32, - from /build/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here + from /build/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:47: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:604:26: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:36: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:45: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:37: + from /build/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:45: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:32, - from /build/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:47: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/razers.h:604:26: required from here + from /build/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:45: + from /build/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:36: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:45: + from /build/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -7759,9 +7498,9 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:32, - from /build/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:47: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' + from /build/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' @@ -7770,22 +7509,21 @@ 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:45: + from /build/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:36: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:45: + from /build/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/apps/param_chooser/../splazers/paramChooser.h:32, - from /build/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' + from /build/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:47: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' @@ -7794,13 +7532,14 @@ 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:36: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:45: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/apps/param_chooser/param_chooser.cpp:37: + from /build/seqan2-2.4.0+dfsg/apps/param_chooser/test_param_chooser.cpp:45: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -8288,6 +8027,20 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:7: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -8313,11 +8066,225 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 2%] Linking CXX executable ../../bin/rabema_do_search +[ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:254:100: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:469:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment, seqan::InfixSegment>; TTagSpec = seqan::Standard_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::InfixSegment>, seqan::AdaptorIterator > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:257:79: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 478 | return TIterator(me, end(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:7: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:513:97: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment, seqan::InfixSegment>; TTagSpec = seqan::Standard_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator, seqan::InfixSegment>, seqan::AdaptorIterator > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/rabema/curve_smoothing.h:257:118: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 343 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:7: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:44, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:44, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:76, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:44, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(seqan::Pattern >&, TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(seqan::Pattern >&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(seqan::Pattern&, TNeedle2&&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' +/build/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:99:24: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' +/build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:27:89: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 625 | return ModifiedString(host); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:44, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:7: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Reference > >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:840:14: required from 'void seqan::setValue(seqan::Holder >&, const TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:254:13: required from 'void seqan::setHost(seqan::Pattern&, TNeedle2&&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' +/build/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:99:24: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' +/build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:27:89: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:625:12: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:212:61: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_begin.h:330:65: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:558:19: required from 'void seqan::_patternFirstInit(seqan::Pattern >&, TNeedle2&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:660:22: required from 'void seqan::_reinitPattern(seqan::Pattern >&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(seqan::Pattern&, TNeedle2&&) [with TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Myers; TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:452:16: required from 'seqan::Pattern >::Pattern(TNeedle2&&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' +/build/seqan2-2.4.0+dfsg/apps/rabema/find_myers_ukkonen_reads.h:99:24: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' +/build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:27:89: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/apps/rabema/do_search.cpp:8: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/apps/mason2/methylation_levels.h:38, + from /build/seqan2-2.4.0+dfsg/apps/mason2/genomic_variants.h:52, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:44, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +[ 1%] Linking CXX executable ../../bin/rabema_do_search cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../bin/rabema_do_search -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target rabema_do_search +[ 1%] Built target rabema_do_search make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= @@ -8327,9 +8294,124 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Building CXX object apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o +[ 1%] Building CXX object apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:41, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Vcf_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:167:52: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:40, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:41, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:41, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:40, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:41, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:41, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:40, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:41, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:40, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Vcf_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:167:52: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.h:40, + from /build/seqan2-2.4.0+dfsg/apps/mason2/vcf_materialization.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +[ 1%] Linking CXX executable ../../bin/test_funcs_param_chooser +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../bin/test_funcs_param_chooser -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Built target test_funcs_param_chooser +make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend.internal". +Scanning dependencies of target rabema_build_gold_standard +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 1%] Building CXX object apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/rabema/rabema_evaluate.cpp:28: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': @@ -8454,22 +8536,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -[ 2%] Linking CXX executable ../../bin/test_funcs_param_chooser -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../bin/test_funcs_param_chooser -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target test_funcs_param_chooser -make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend.internal". -Scanning dependencies of target rabema_build_gold_standard -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Building CXX object apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/rabema/rabema_build_gold_standard.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:76, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -8819,7 +8885,7 @@ 143 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target pair_align_lcs +[ 1%] Built target pair_align_lcs make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= @@ -8829,13 +8895,15 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Building CXX object apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o +[ 1%] Building CXX object apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/rabema/prepare_sam.cpp -[ 2%] Linking CXX executable ../../bin/param_chooser -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../bin/param_chooser -lrt -lz -lbz2 +[ 2%] Linking CXX static library libmason_sim.a +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1 +/usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o +/usr/bin/ranlib libmason_sim.a make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target param_chooser +[ 2%] Built target mason_sim make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/razers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= @@ -8847,6 +8915,22 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object apps/razers/CMakeFiles/razers.dir/razers.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers.dir/razers.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/razers/razers.cpp +[ 2%] Linking CXX executable ../../bin/param_chooser +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../bin/param_chooser -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 2%] Built target param_chooser +make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend.internal". +Scanning dependencies of target razers3_quality2prob +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 2%] Building CXX object apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, from /build/seqan2-2.4.0+dfsg/apps/rabema/prepare_sam.cpp:29: @@ -8929,6 +9013,16 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h:34, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:7: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:49: @@ -9039,6 +9133,88 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:50: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44, @@ -9060,6 +9236,34 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:50: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -9083,6 +9287,29 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:49: @@ -9111,6 +9338,62 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:50: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:50: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:50: /build/seqan2-2.4.0+dfsg/apps/razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TMyersPatterns = seqan::String, seqan::Alloc<> >, seqan::Myers > >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobal = seqan::Tag >]': /build/seqan2-2.4.0+dfsg/apps/razers/razers_matepairs.h:492:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String, seqan::Alloc<> >, seqan::Myers > >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' @@ -9167,6 +9450,34 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:50: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/razers/razers.cpp:49: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' @@ -10099,30 +10410,7 @@ 143 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target pair_align_global_0111 -make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend.internal". -Scanning dependencies of target razers3_quality2prob -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Building CXX object apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h:34, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:7: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target pair_align_global_0110 +[ 2%] Built target pair_align_global_1000 make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= @@ -10134,241 +10422,24 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:50: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:50: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:50: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 2%] Linking CXX executable ../../bin/rabema_build_gold_standard +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../bin/rabema_build_gold_standard -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target pair_align_global_1000 +[ 2%] Built target rabema_build_gold_standard make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/depend.internal". -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:50: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ Scanning dependencies of target razers3 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3.dir/razers.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:42:50: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/quality2prob.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 2%] Linking CXX executable ../../bin/rabema_evaluate -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../bin/rabema_evaluate -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target rabema_evaluate +[ 2%] Built target pair_align_global_0110 make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rep_sep /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rep_sep /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= @@ -10380,11 +10451,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rep_sep && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp -[ 2%] Linking CXX executable ../../bin/rabema_build_gold_standard -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../bin/rabema_build_gold_standard -lrt -lz -lbz2 +[ 2%] Linking CXX executable ../../bin/rabema_evaluate +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../bin/rabema_evaluate -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target rabema_build_gold_standard +[ 2%] Built target rabema_evaluate make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/sak /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sak /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= @@ -10566,18 +10637,40 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 2%] Linking CXX executable ../../bin/rabema_prepare_sam +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../bin/rabema_prepare_sam -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 2%] Built target rabema_prepare_sam +make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/sam2matrix /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend.internal". +Scanning dependencies of target sam2matrix +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 3%] Building CXX object apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h:34, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:6: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const seqan::StringSet > >&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TFileNames = char*]' -/build/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:120:53: required from here + from /build/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:27: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -10585,7 +10678,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:6: + from /build/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:27: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ @@ -10593,14 +10686,14 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:6: + from /build/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:27: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:6: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -10628,24 +10721,18 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h:34, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:27: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here + from /build/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:6: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const seqan::StringSet > >&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TFileNames = char*]' +/build/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:120:53: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -10653,7 +10740,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:27: + from /build/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:6: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ @@ -10661,7 +10748,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:27: + from /build/seqan2-2.4.0+dfsg/apps/razers3/simulate_reads.cpp:6: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -10693,9 +10780,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 2%] Linking CXX executable ../../bin/rabema_prepare_sam -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../bin/rabema_prepare_sam -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44, @@ -10714,31 +10798,45 @@ /build/seqan2-2.4.0+dfsg/apps/rep_sep/rgraph_base.h:44:5: note: because 'GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>' has user-provided 'GraphCargo::GraphCargo(const GraphCargo&) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = long unsigned int]' 44 | GraphCargo(GraphCargo const& other) | ^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +[ 3%] Linking CXX executable ../../bin/razers3_quality2prob +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../bin/razers3_quality2prob -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:27: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:61: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:27: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:62: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 3%] Built target razers3_quality2prob +make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/samcat /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/depend.internal". +Scanning dependencies of target samcat +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 3%] Building CXX object apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/samcat.dir/samcat.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: @@ -10766,17 +10864,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target rabema_prepare_sam -make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/sam2matrix /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend.internal". -Scanning dependencies of target sam2matrix -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: @@ -10804,33 +10891,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 3%] Building CXX object apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:785:69: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:62: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: @@ -10859,21 +10919,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: @@ -10902,81 +10947,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode, seqan::NMatchesNone_>; seqan::CharString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSPrefix; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1348:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSPrefix; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1348:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode, seqan::NMatchesNone_>; seqan::CharString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSPrefix; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1348:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -11000,21 +10970,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1351:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: @@ -11093,21 +11048,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1351:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44, @@ -11130,59 +11070,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode, seqan::NMatchesNone_>; seqan::CharString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1351:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:27: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/rep_sep/rep_sep.cpp:27: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: @@ -11273,10 +11160,112 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSize = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:468:23: required from 'typename seqan::EnableIf, seqan::Tag > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const seqan::SequenceOutputOptions&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf, seqan::Tag > > >, void>::Type = void; seqan::Fastq = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:423:16: required from 'void seqan::writeRecord(seqan::FormattedFile, seqan::Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const seqan::Tag&) [with TSpec = void; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; TagSpec = seqan::TagFastq_]' +/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:506:20: required from 'void seqan::writeRecord(seqan::FormattedFile, seqan::Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const seqan::TagSelector&) [with TSpec = void; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:519:16: required from 'typename seqan::EnableIf >, seqan::IsSequence >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = seqan::FormattedFile, seqan::Tag >; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::IsSequence >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:424:110: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TSequence = seqan::Segment >, seqan::InfixSegment>; TSize = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:475:23: required from 'typename seqan::EnableIf, seqan::Tag > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const seqan::SequenceOutputOptions&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf, seqan::Tag > > >, void>::Type = void; seqan::Fastq = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:423:16: required from 'void seqan::writeRecord(seqan::FormattedFile, seqan::Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const seqan::Tag&) [with TSpec = void; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; TagSpec = seqan::TagFastq_]' +/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:506:20: required from 'void seqan::writeRecord(seqan::FormattedFile, seqan::Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const seqan::TagSelector&) [with TSpec = void; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:519:16: required from 'typename seqan::EnableIf >, seqan::IsSequence >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = seqan::FormattedFile, seqan::Tag >; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::IsSequence >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:424:110: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:62: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:785:69: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:62: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here /build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] @@ -11289,9 +11278,9 @@ 104 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode, seqan::NMatchesNone_>; seqan::CharString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here /build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] @@ -11304,10 +11293,173 @@ 104 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSPrefix; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode, seqan::NMatchesNone_>; seqan::CharString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1345:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSPrefix; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1348:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSPrefix; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1348:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode, seqan::NMatchesNone_>; seqan::CharString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSPrefix; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1348:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 3%] Built target pair_align_local +In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1351:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/searchjoin /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/depend.internal". +In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1351:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +Scanning dependencies of target s4_join +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 3%] Building CXX object apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/s4_join.dir/join.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp +In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode, seqan::NMatchesNone_>; seqan::CharString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1351:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1304:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode, seqan::NMatchesNone_>; seqan::CharString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1307:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:75: +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TRazerSMode = seqan::RazerSMode; seqan::CharString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1301:27: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&, seqan::RazerSMode, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TAlignMode = seqan::RazerSPrefix; TGapMode = seqan::RazerSUngapped; TMatchNPolicy = seqan::NMatchesNone_; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(seqan::FragmentStore&, TCounts&, seqan::CharString, seqan::RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:257:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:866:66: required from here /build/seqan2-2.4.0+dfsg/apps/razers3/outputFormat.h:672:1: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 672 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) @@ -11393,58 +11545,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSize = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:468:23: required from 'typename seqan::EnableIf, seqan::Tag > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const seqan::SequenceOutputOptions&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf, seqan::Tag > > >, void>::Type = void; seqan::Fastq = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:423:16: required from 'void seqan::writeRecord(seqan::FormattedFile, seqan::Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const seqan::Tag&) [with TSpec = void; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; TagSpec = seqan::TagFastq_]' -/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:506:20: required from 'void seqan::writeRecord(seqan::FormattedFile, seqan::Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const seqan::TagSelector&) [with TSpec = void; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:519:16: required from 'typename seqan::EnableIf >, seqan::IsSequence >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = seqan::FormattedFile, seqan::Tag >; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::IsSequence >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:424:110: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/tokenization.h:489:23: required from 'void seqan::writeWrappedString(TTarget&, const TSequence&, TSize) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TSequence = seqan::Segment >, seqan::InfixSegment>; TSize = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/fasta_fastq.h:475:23: required from 'typename seqan::EnableIf, seqan::Tag > > >, void>::Type seqan::writeRecord(TTarget&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const seqan::SequenceOutputOptions&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf, seqan::Tag > > >, void>::Type = void; seqan::Fastq = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:423:16: required from 'void seqan::writeRecord(seqan::FormattedFile, seqan::Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const seqan::Tag&) [with TSpec = void; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; TagSpec = seqan::TagFastq_]' -/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:506:20: required from 'void seqan::writeRecord(seqan::FormattedFile, seqan::Tag, TSpec>&, const TIdString&, const TSeqString&, const TQualString&, const seqan::TagSelector&) [with TSpec = void; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/seq_io/sequence_file.h:519:16: required from 'typename seqan::EnableIf >, seqan::IsSequence >, void>::Type seqan::writeRecord(TFile&, const TIdString&, const TSeqString&, const TQualString&) [with TFile = seqan::FormattedFile, seqan::Tag >; TIdString = seqan::String >; TSeqString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TQualString = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::IsSequence >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:424:110: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/sak/sak.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -11566,6 +11666,29 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:60: @@ -11604,6 +11727,29 @@ 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, @@ -11629,6 +11775,71 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:85: /build/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSCoreOptions >]': /build/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSCoreOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSGapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' @@ -11668,6 +11879,30 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:33, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:85: /build/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSCoreOptions >]': @@ -11762,6 +11997,30 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:33, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:85: /build/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:862:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] @@ -11774,10 +12033,94 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Built target pair_align_local -[ 3%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/razers3/param_tabs.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:85: /build/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = seqan::String, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TSplitters = seqan::String >; TShape = const seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSCoreOptions >]': /build/seqan2-2.4.0+dfsg/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(seqan::FragmentStore&, TCounts&, seqan::RazerSCoreOptions&, const TShape&, const seqan::RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; TShape = seqan::Shape, seqan::OneGappedShape>; TAlignMode = seqan::RazerSGlobal; TGapMode = seqan::RazerSUngapped; TScoreMode = seqan::RazerSErrors; TMatchNPolicy = seqan::NMatchesAll_; TFilterSpec = seqan::Pigeonhole]' @@ -12444,6 +12787,16 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:222, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h:34, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: @@ -12828,29 +13181,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:55, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h:32, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: @@ -13078,6 +13408,62 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:319:80: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 764 | dbIndex.index = TIndex(db.text); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:87: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 764 | dbIndex.index = TIndex(db.text); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:87: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 888 | dbIndex.index[seedSet] = TIndex(db.text); + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:332:81: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 764 | dbIndex.index = TIndex(db.text); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSCoreOptions >, seqan::RazerSMode, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String, seqan::Alloc<> >; TRead = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesAll_]': /build/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(seqan::ThreadLocalStorage >&, seqan::Job >&, const seqan::String >&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TFilterPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >; TShape = seqan::Shape, seqan::UngappedShape<0> >; TOptions = seqan::RazerSCoreOptions >; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode; THitString = seqan::String, seqan::Alloc<> >]' @@ -13098,6 +13484,20 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:88: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 764 | dbIndex.index = TIndex(db.text); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); @@ -13158,29 +13558,20 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:88: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 888 | dbIndex.index[seedSet] = TIndex(db.text); + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:223, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h:34, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: @@ -13388,6 +13779,48 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:357:80: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 764 | dbIndex.index = TIndex(db.text); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:87: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 764 | dbIndex.index = TIndex(db.text); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:87: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 888 | dbIndex.index[seedSet] = TIndex(db.text); + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:222, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h:34, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: @@ -13412,6 +13845,20 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:370:81: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 764 | dbIndex.index = TIndex(db.text); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSCoreOptions >, seqan::RazerSMode, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String, seqan::Alloc<> >; TRead = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesAll_]': /build/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(seqan::ThreadLocalStorage >&, seqan::Job >&, const seqan::String >&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >; TFilterPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >; TShape = seqan::Shape, seqan::GappedShape > >; TOptions = seqan::RazerSCoreOptions >; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode; THitString = seqan::String, seqan::Alloc<> >]' @@ -13492,30 +13939,34 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:88: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 764 | dbIndex.index = TIndex(db.text); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:88: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 888 | dbIndex.index[seedSet] = TIndex(db.text); + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:55, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h:32, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: @@ -13583,30 +14034,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:223, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h:34, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: @@ -13630,23 +14057,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/shape_onegapped.h:107:9: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 107 | Shape(Shape const &other): | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:222, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h:34, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: @@ -13695,30 +14105,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSCoreOptions >, seqan::RazerSMode, seqan::Pattern, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::String > >; TGenome = seqan::String, seqan::Alloc<> >; TRead = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesNone_]': /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, seqan::Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TReadIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TFilterSpec = seqan::Swift > >; TCounts = seqan::String >; TRazerSOptions = seqan::RazerSCoreOptions >; TRazerSMode = seqan::RazerSMode]' @@ -13959,30 +14345,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:74: /build/seqan2-2.4.0+dfsg/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, seqan::Segment, unsigned int, const TRead&, const seqan::RazerSMode&) [with TMatchVerifier = seqan::MatchVerifier, seqan::String, seqan::Alloc<> >, seqan::RazerSCoreOptions >, seqan::RazerSMode, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::String > >; TGenome = seqan::String, seqan::Alloc<> >; TRead = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TMatchNPolicy = seqan::NMatchesNone_]': /build/seqan2-2.4.0+dfsg/apps/razers3/razers_parallel.h:296:20: required from 'void seqan::workVerification(seqan::ThreadLocalStorage >&, seqan::Job >&, const seqan::String >&) [with TMatches = seqan::String, seqan::Alloc<> >; TFragmentStore = seqan::FragmentStore; TFilterFinder = seqan::Finder, seqan::Alloc<> >, seqan::Pigeonhole >; TFilterPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >; TShape = seqan::Shape, seqan::OneGappedShape>; TOptions = seqan::RazerSCoreOptions >; TCounts = seqan::String >; TRazerSMode = seqan::RazerSMode; THitString = seqan::String, seqan::Alloc<> >]' @@ -14223,41 +14585,41 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:145:60: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:56: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:132:10: required from 'void _writeRecord(Writer&, const TString1&, const TString2&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = seqan::Tag; TString1 = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:197:21: required from 'bool close(Writer >&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:293:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:68: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:87: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 1731 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/sam2matrix/sam2matrix.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/samcat /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/depend.internal". -Scanning dependencies of target samcat -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Building CXX object apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/samcat.dir/samcat.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: @@ -14284,6 +14646,97 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:88: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 1731 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:87: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 1731 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:88: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 1731 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:56: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:50: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:68: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:87: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:61: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': @@ -14433,6 +14886,81 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:88: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:56: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:50: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:349:68: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:87: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:88: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:63: @@ -14599,6 +15127,78 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:68: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:56: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:132:10: required from 'void _writeRecord(Writer&, const TString1&, const TString2&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = seqan::Tag; TString1 = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:197:21: required from 'bool close(Writer >&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:293:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:68: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:56: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:349:68: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:56: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:61: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&; TExpand = seqan::Tag]': @@ -14643,6 +15243,189 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:87: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:87: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:88: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:88: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:87: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:87: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:88: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:88: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc > >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:68: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:132:10: required from 'void _writeRecord(Writer&, const TString1&, const TString2&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = seqan::Tag; TString1 = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:197:21: required from 'bool close(Writer >&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:293:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:68: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String > >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment > >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:349:68: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:60: @@ -16419,29 +17202,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:60: @@ -16616,47 +17376,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/samcat/samcat.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/apps/razers3/razers.cpp:61: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': @@ -17196,1226 +17915,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder, seqan::Alloc<> >, seqan::Swift > > >, seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSCoreOptions >, seqan::String >, seqan::RazerSMode > >&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 3%] Linking CXX executable ../../bin/razers3_quality2prob -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../bin/razers3_quality2prob -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Built target razers3_quality2prob -make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/searchjoin /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/depend.internal". -Scanning dependencies of target s4_join -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Building CXX object apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/s4_join.dir/join.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -[ 3%] Linking CXX executable ../../bin/razers3_simulate_reads -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../bin/razers3_simulate_reads -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Built target razers3_simulate_reads -make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/searchjoin /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/depend.internal". -Scanning dependencies of target s4_search -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Building CXX object apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/s4_search.dir/search.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:319:80: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 764 | dbIndex.index = TIndex(db.text); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:87: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 764 | dbIndex.index = TIndex(db.text); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:87: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 888 | dbIndex.index[seedSet] = TIndex(db.text); - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:332:81: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 764 | dbIndex.index = TIndex(db.text); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:88: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 764 | dbIndex.index = TIndex(db.text); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:88: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 888 | dbIndex.index[seedSet] = TIndex(db.text); - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:357:80: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 764 | dbIndex.index = TIndex(db.text); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:87: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 764 | dbIndex.index = TIndex(db.text); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:87: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 888 | dbIndex.index[seedSet] = TIndex(db.text); - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:355:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:370:81: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 764 | dbIndex.index = TIndex(db.text); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:264:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:88: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 764 | dbIndex.index = TIndex(db.text); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:279:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:88: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 888 | dbIndex.index[seedSet] = TIndex(db.text); - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:56: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:132:10: required from 'void _writeRecord(Writer&, const TString1&, const TString2&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = seqan::Tag; TString1 = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:197:21: required from 'bool close(Writer >&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:293:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:68: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:87: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 1731 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:88: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 1731 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:87: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 1731 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:88: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 1731 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:56: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:50: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:68: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:87: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:88: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:56: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:50: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:349:68: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:87: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:88: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:68: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:56: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:132:10: required from 'void _writeRecord(Writer&, const TString1&, const TString2&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = seqan::Tag; TString1 = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:197:21: required from 'bool close(Writer >&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:293:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:68: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:56: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:349:68: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:56: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:87: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:323:87: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:88: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:336:88: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:87: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:361:87: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:88: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, void, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:374:88: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc > >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:68: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:132:10: required from 'void _writeRecord(Writer&, const TString1&, const TString2&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = seqan::Tag; TString1 = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:197:21: required from 'bool close(Writer >&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:293:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:311:68: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String > >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment > >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:791:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:286:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:349:68: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:282:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:96: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 764 | dbIndex.index = TIndex(db.text); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:323:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:96: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 888 | dbIndex.index[seedSet] = TIndex(db.text); - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:282:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:97: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 764 | dbIndex.index = TIndex(db.text); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:323:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:97: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 888 | dbIndex.index[seedSet] = TIndex(db.text); - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:405:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:95: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 764 | dbIndex.index = TIndex(db.text); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:449:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:95: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 888 | dbIndex.index[seedSet] = TIndex(db.text); - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:405:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:96: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 764 | dbIndex.index = TIndex(db.text); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:449:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:96: required from here -/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] - 888 | dbIndex.index[seedSet] = TIndex(db.text); - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' - 88 | Index(Index const & other) : - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:96: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 1731 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:97: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 1731 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:95: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 1731 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:96: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 1731 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:56: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:50: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:508:81: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:96: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:97: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:56: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:50: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:536:81: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:95: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:96: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:508:81: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:56: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:536:81: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:56: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:96: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -[ 3%] Linking CXX executable ../../bin/rep_sep -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1 -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:96: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../bin/rep_sep -lrt -lz -lbz2 -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:97: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:97: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:95: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:95: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:96: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:96: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] - 630 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Built target rep_sep -make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend.internal". -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc > >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:508:81: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:56: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:132:10: required from 'void _writeRecord(Writer&, const TString1&, const TString2&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TSpec = seqan::Tag; TString1 = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:150:17: required from 'void _write(Writer&, typename seqan::Size::Type, typename seqan::Size::Type) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TSpec = seqan::Tag; typename seqan::Size::Type = unsigned int; typename seqan::Size::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:98:15: required from 'void Writer::operator()(typename seqan::Size::Type, typename seqan::Size::Type) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TSpec = seqan::Tag; typename seqan::Size::Type = unsigned int; typename seqan::Size::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:142:13: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:508:81: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -Scanning dependencies of target seqan_tcoffee -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Building CXX object apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.13.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String > >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment > >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:536:81: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, @@ -19586,9 +19085,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 3%] Linking CXX executable ../../bin/sak -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sak.dir/sak.cpp.o -o ../../bin/sak -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, @@ -19641,19 +19137,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Built target sak -make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/seqcons2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/depend.internal". -Scanning dependencies of target seqcons2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqcons2.dir/seqcons.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, @@ -19758,6 +19241,737 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +[ 3%] Linking CXX executable ../../bin/razers3_simulate_reads +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../bin/razers3_simulate_reads -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 3%] Built target razers3_simulate_reads +make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/searchjoin /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/depend.internal". +Scanning dependencies of target s4_search +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 3%] Building CXX object apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/s4_search.dir/search.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp +[ 3%] Linking CXX executable ../../bin/rep_sep +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../bin/rep_sep -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 3%] Built target rep_sep +make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend.internal". +Scanning dependencies of target seqan_tcoffee +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 3%] Building CXX object apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.13.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:282:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:96: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 764 | dbIndex.index = TIndex(db.text); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:323:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:96: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 888 | dbIndex.index[seedSet] = TIndex(db.text); + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:282:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:97: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 764 | dbIndex.index = TIndex(db.text); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:323:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:97: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 888 | dbIndex.index[seedSet] = TIndex(db.text); + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:405:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:95: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 764 | dbIndex.index = TIndex(db.text); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:449:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:95: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 888 | dbIndex.index[seedSet] = TIndex(db.text); + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:344:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:405:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:96: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:764:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 764 | dbIndex.index = TIndex(db.text); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:374:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:449:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:96: required from here +/build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:888:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] + 888 | dbIndex.index[seedSet] = TIndex(db.text); + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' + 88 | Index(Index const & other) : + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:96: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 1731 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:97: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 1731 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:95: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 1731 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:311:18: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:96: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 1731 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:56: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:50: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:508:81: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:96: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:97: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:56: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:50: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:536:81: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:95: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:605:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:96: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:508:81: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:56: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:536:81: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:56: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:61: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:96: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:516:96: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:97: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder, seqan::Alloc > >, seqan::Owner > >, seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:524:97: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:95: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:544:95: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +[ 3%] Linking CXX executable ../../bin/sak +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1 +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:18: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:96: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TSpec = seqan::Truncated; TDfsOrder = seqan::Preorder_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Truncated]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:527:52: required from 'bool seqan::_moveIteratorsDown(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:432:27: required from 'bool seqan::_pushState(seqan::Finder_, seqan::Index, seqan::Backtracking >&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_backtracking.h:1311:31: required from 'void seqan::_find(seqan::Finder_, seqan::Index, seqan::Backtracking >&, TDelegate&, const TStage&) [with TText = seqan::StringSet > >, seqan::Owner > >; TTextIndexSpec = seqan::IndexSa >; TPattern = seqan::StringSet > >, seqan::Owner > >; TPatternIndexSpec = seqan::IndexSa >; TDistance = seqan::Tag; TSpec = seqan::Tag; TStage = seqan::StageInitial_; TDelegate = DbFinder > >, seqan::Owner > >, seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >, seqan::Tag, Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:611:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:456:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:552:96: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:630:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] + 630 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sak.dir/sak.cpp.o -o ../../bin/sak -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc > >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc > >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TSeq2 = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:508:81: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:56: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:132:10: required from 'void _writeRecord(Writer&, const TString1&, const TString2&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TSpec = seqan::Tag; TString1 = seqan::Segment >, seqan::InfixSegment>; TString2 = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:150:17: required from 'void _write(Writer&, typename seqan::Size::Type, typename seqan::Size::Type) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TSpec = seqan::Tag; typename seqan::Size::Type = unsigned int; typename seqan::Size::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/writer.h:98:15: required from 'void Writer::operator()(typename seqan::Size::Type, typename seqan::Size::Type) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TDbQuery = Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >; TSpec = seqan::Tag; typename seqan::Size::Type = unsigned int; typename seqan::Size::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:142:13: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:508:81: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String > >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment > >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter > >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1515:66: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = seqan::Segment > >, seqan::InfixSegment>; TSeq2 = seqan::Segment > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/finder.h:810:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:330:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Tag; TSpec = seqan::Tag; seqan::Nothing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:536:81: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 3%] Built target sak +make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/seqcons2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/depend.internal". +Scanning dependencies of target seqcons2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 3%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqcons2.dir/seqcons.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons.cpp +[ 3%] Linking CXX executable ../../bin/sam2matrix +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../bin/sam2matrix -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 3%] Built target sam2matrix +make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/sgip /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/depend.internal". +Scanning dependencies of target sgip +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 3%] Building CXX object apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/sgip.dir/sgip.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/sgip/sgip.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(seqan::String&, const seqan::Graph&, const TPropertyMap&, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String > > > >; TValue = long unsigned int; TCargo = seqan::Pair >]': +/build/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >; TAnnotation = bool; TOutGraph = seqan::Graph, seqan::Alloc<> >, seqan::Dependent > >, long unsigned int, seqan::Tag > >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Dependent >; TScore = long unsigned int; TTagSpec = seqan::TagExactRefinement_; typename seqan::Size::Type>::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >; TOutGraph = seqan::Graph, seqan::Alloc<> >, seqan::Dependent > >, long unsigned int, seqan::Tag > >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Dependent >]' +/build/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:191:20: required from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::Graph >&, FrequencyCounting) [with TFragment = seqan::Fragment<>; TSpec1 = seqan::Alloc<>; TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = long unsigned int; TSpec = seqan::Tag; seqan::FrequencyCounting = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:178:24: required from 'void seqan::evaluateAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:281:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:40: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] + 1667 | act_prop = property(pm, act_knot); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' + 288 | IntervalTreeNode(IntervalTreeNode const & other) : + | ^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] + 1679 | next_prop = property(pm, targetVertex(it)); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' + 288 | IntervalTreeNode(IntervalTreeNode const & other) : + | ^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] + 1701 | next_prop = property(pm, targetVertex(it)); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' + 288 | IntervalTreeNode(IntervalTreeNode const & other) : + | ^~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': @@ -19786,6 +20000,89 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +[ 3%] Linking CXX executable ../../bin/samcat +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/samcat.dir/samcat.cpp.o -o ../../bin/samcat -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:40: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 3%] Built target samcat +make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/snp_store /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/depend.internal". +Scanning dependencies of target snp_store +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 3%] Building CXX object apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:40: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:57: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': @@ -19809,6 +20106,40 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:40: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, @@ -19887,6 +20218,40 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:40: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, @@ -19913,9 +20278,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 3%] Linking CXX executable ../../bin/sam2matrix -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../bin/sam2matrix -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, @@ -20020,37 +20382,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, @@ -20077,18 +20408,40 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 3%] Built target sam2matrix -make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/sgip /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/depend.internal". -Scanning dependencies of target sgip -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Building CXX object apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/sgip.dir/sgip.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/sgip/sgip.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:40: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, @@ -20817,37 +21170,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, @@ -21108,31 +21430,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, @@ -21185,49 +21482,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(seqan::String&, const seqan::Graph&, const TPropertyMap&, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String > > > >; TValue = long unsigned int; TCargo = seqan::Pair >]': -/build/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:571:49: required from 'void seqan::matchRefinement(TAlignmentString&, seqan::StringSet&, TScore&, TOutGraph&, typename seqan::Size::Type>::Type, TAnnotation&, seqan::Tag) [with TAlignmentString = seqan::String >; TAnnotation = bool; TOutGraph = seqan::Graph, seqan::Alloc<> >, seqan::Dependent > >, long unsigned int, seqan::Tag > >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Dependent >; TScore = long unsigned int; TTagSpec = seqan::TagExactRefinement_; typename seqan::Size::Type>::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:678:20: required from 'void seqan::matchRefinement(TFragmentString&, seqan::StringSet&, TOutGraph&) [with TFragmentString = seqan::String >; TOutGraph = seqan::Graph, seqan::Alloc<> >, seqan::Dependent > >, long unsigned int, seqan::Tag > >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Dependent >]' -/build/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:191:20: required from 'void seqan::buildAlignmentGraph(seqan::String&, seqan::Graph >&, FrequencyCounting) [with TFragment = seqan::Fragment<>; TSpec1 = seqan::Alloc<>; TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = long unsigned int; TSpec = seqan::Tag; seqan::FrequencyCounting = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:178:24: required from 'void seqan::evaluateAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:281:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:40: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1667:18: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] - 1667 | act_prop = property(pm, act_knot); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' - 288 | IntervalTreeNode(IntervalTreeNode const & other) : - | ^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1679:23: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] - 1679 | next_prop = property(pm, targetVertex(it)); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' - 288 | IntervalTreeNode(IntervalTreeNode const & other) : - | ^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1701:27: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] - 1701 | next_prop = property(pm, targetVertex(it)); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' - 288 | IntervalTreeNode(IntervalTreeNode const & other) : - | ^~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/searchjoin/db.h:43, @@ -21280,207 +21534,122 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:40: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:40: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:40: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) +[ 3%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +[ 3%] Building CXX object apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/razers/param_tabs.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, + from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:48, + from /build/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +[ 4%] Linking CXX executable ../../bin/razers +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../bin/razers -lrt -lz -lbz2 +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/parallel/algorithm:34, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:48: +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = seqan::Pair >*; _Distance = long int; _Tp = seqan::Pair >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::StringSet, seqan::Alloc > >, seqan::Owner > > > >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'seqan::Pair >' changed in GCC 9.1 + 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 4%] Built target razers +make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/splazers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/depend.internal". +Scanning dependencies of target splazers +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 4%] Building CXX object apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/splazers.dir/splazers.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/splazers/splazers.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:54, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/pair_base.h: In instantiation of 'seqan::Pair::Pair(const T1&, const T2&) [with T1 = unsigned int; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]': +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:5148:46: required from 'void seqan::dumpShortIndelPolymorphismsBatch(TFragmentStore&, TReadCigars&, TGenome&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCigars = seqan::StringSet > >; TGenome = seqan::String, seqan::Alloc<> >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:971:74: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/pair_base.h:120:59: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 120 | Pair(T1 const & _i1, T2 const & _i2) : i1(_i1), i2(_i2) {} + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:40: required from here + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:46:14: required from 'bool _loadSequences(TSeqSet&, TNameSet&, const char*) [with TSeqSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TNameSet = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:66:19: required from 'void customizedMsaAlignment(const seqan::MsaOptions&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:290:31: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:305:40: required from here + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp:23: + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 3%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp -[ 3%] Linking CXX executable ../../bin/samcat -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/samcat.dir/samcat.cpp.o -o ../../bin/samcat -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Built target samcat -make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/snp_store /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/depend.internal". -Scanning dependencies of target snp_store -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Building CXX object apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, - from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:48, - from /build/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -[ 3%] Building CXX object apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/razers/param_tabs.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:47, @@ -21501,17 +21670,49 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -21541,6 +21742,27 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const seqan::Tag&) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:4057:36: required from 'void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCounts = seqan::String >; TReadCigars = seqan::StringSet > >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:2477:41: required from 'void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCigars = seqan::StringSet > >; TReadCounts = seqan::String >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:986:53: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 773 | Iter > > result = lhs; + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 775 | return result; + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -21640,6 +21862,55 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:689:35: required from 'typename seqan::Iterator >::Type seqan::iter(const T&, TPos, const seqan::Tag&) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:669:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(const T&, TPos) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:451:22: required from 'bool seqan::isGap(const seqan::Gaps >&, TPosition) [with TSequence = seqan::String, seqan::Alloc<> >; TGapAnchors = seqan::String, seqan::Alloc<> >; TPosition = long int]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:4418:72: required from 'void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCounts = seqan::String >; TReadCigars = seqan::StringSet > >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:2477:41: required from 'void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCigars = seqan::StringSet > >; TReadCounts = seqan::String >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:986:53: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 773 | Iter > > result = lhs; + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 775 | return result; + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:55, from /build/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:40: /build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h: In instantiation of 'void seqan::AnsonMyersRealignmentRound_::_subtractReadAlignment(unsigned int, unsigned int&, seqan::AnsonMyersRealignmentRound_::TProfileString&, seqan::ExtractProfileInfo_&, seqan::AnsonMyersRealignmentRound_::TAlignedReadElement, int, const seqan::WindowClippingInfo_&) [with TFragmentStore = seqan::FragmentStore<>; seqan::AnsonMyersRealignmentRound_::TProfileString = seqan::String >, seqan::Alloc<> >; seqan::AnsonMyersRealignmentRound_::TAlignedReadElement = seqan::AlignedReadStoreElement, void>]': @@ -21661,6 +21932,33 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:47, from /build/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:40: @@ -21887,6 +22185,33 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:223, from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, @@ -21974,9 +22299,36 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:47, - from /build/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:40: + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' +/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:47, + from /build/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_app.cpp:40: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' @@ -22068,9 +22420,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 4%] Linking CXX executable ../../bin/razers -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../bin/razers -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:45, @@ -22320,13 +22669,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 4%] Built target razers -make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/splazers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, @@ -22384,12 +22726,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ -Scanning dependencies of target splazers -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 4%] Building CXX object apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/splazers.dir/splazers.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/splazers/splazers.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:47, @@ -22542,6 +22878,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = seqan::Pair >*; _Distance = long int; _Tp = seqan::Pair >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::StringSet > >, seqan::Owner > > > >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'seqan::Pair >' changed in GCC 9.1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:47, @@ -22648,6 +22986,16 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/apps/splazers/razers.h:30, + from /build/seqan2-2.4.0+dfsg/apps/splazers/splazers.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:44, @@ -22925,275 +23273,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:54, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/pair_base.h: In instantiation of 'seqan::Pair::Pair(const T1&, const T2&) [with T1 = unsigned int; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]': -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:5148:46: required from 'void seqan::dumpShortIndelPolymorphismsBatch(TFragmentStore&, TReadCigars&, TGenome&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCigars = seqan::StringSet > >; TGenome = seqan::String, seqan::Alloc<> >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:971:74: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/pair_base.h:120:59: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 120 | Pair(T1 const & _i1, T2 const & _i2) : i1(_i1), i2(_i2) {} - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const seqan::Tag&) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:4057:36: required from 'void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCounts = seqan::String >; TReadCigars = seqan::StringSet > >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:2477:41: required from 'void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCigars = seqan::StringSet > >; TReadCounts = seqan::String >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:986:53: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 773 | Iter > > result = lhs; - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 775 | return result; - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/apps/splazers/razers.h:30, - from /build/seqan2-2.4.0+dfsg/apps/splazers/splazers.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = const seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:689:35: required from 'typename seqan::Iterator >::Type seqan::iter(const T&, TPos, const seqan::Tag&) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:669:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(const T&, TPos) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:451:22: required from 'bool seqan::isGap(const seqan::Gaps >&, TPosition) [with TSequence = seqan::String, seqan::Alloc<> >; TGapAnchors = seqan::String, seqan::Alloc<> >; TPosition = long int]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:4418:72: required from 'void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCounts = seqan::String >; TReadCigars = seqan::StringSet > >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.h:2477:41: required from 'void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TReadCigars = seqan::StringSet > >; TReadCounts = seqan::String >; TGenomeName = seqan::String >; TFile = std::basic_ofstream; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:986:53: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 773 | Iter > > result = lhs; - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 775 | return result; - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:33: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:77:18: required from 'bool loadGenomes(TGenomeSet&, seqan::StringSet > >&, std::map >, TGenomeSetSize>&, TGenomeNames&) [with TGenomeSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TGenomeSetSize = long unsigned int; TGenomeNames = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:670:56: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' -/build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:1412:36: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:31: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/apps/snp_store/snp_store.cpp:32: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/splazers/splazers.cpp:49: @@ -23405,6 +23484,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = seqan::Pair >*; _Distance = long int; _Tp = seqan::Pair >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::StringSet, seqan::Alloc > >, seqan::Owner > > > >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'seqan::Pair >' changed in GCC 9.1 In file included from /build/seqan2-2.4.0+dfsg/apps/splazers/splazers.cpp:62: /build/seqan2-2.4.0+dfsg/apps/splazers/razers_spliced.h: In instantiation of 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobal, TSufPrefSpec) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TMyersPatterns = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; TSufPrefSpec = seqan::LongestSuffix; seqan::SwiftSemiGlobal = seqan::Tag >]': /build/seqan2-2.4.0+dfsg/apps/splazers/razers_spliced.h:2543:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern >&, seqan::Pattern >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TOriReadSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TReadIndexL = seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TReadIndexR = seqan::Index, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String > > >]' @@ -23560,9 +23641,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 4%] Linking CXX executable ../../bin/sgip -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sgip.dir/sgip.cpp.o -o ../../bin/sgip -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/splazers/splazers.cpp:49: @@ -23591,6 +23669,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = seqan::Pair >*; _Distance = long int; _Tp = seqan::Pair >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::StringSet > >, seqan::Owner > > > >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'seqan::Pair >' changed in GCC 9.1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44, @@ -23614,13 +23694,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 4%] Built target sgip -make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/stellar /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44, @@ -23644,12 +23717,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -Scanning dependencies of target stellar -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 4%] Building CXX object apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/stellar.dir/stellar.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -24095,6 +24162,14 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/shape_gapped.h:281:9: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 281 | Shape(Shape const &other): | ^~~~~ +[ 4%] Linking CXX executable ../../bin/sgip +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/sgip.dir/sgip.cpp.o -o ../../bin/sgip -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 4%] Built target sgip +make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/stellar /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:55, from /build/seqan2-2.4.0+dfsg/apps/splazers/razers.h:28, from /build/seqan2-2.4.0+dfsg/apps/splazers/splazers.cpp:50: @@ -24151,6 +24226,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:55, from /build/seqan2-2.4.0+dfsg/apps/splazers/razers.h:28, from /build/seqan2-2.4.0+dfsg/apps/splazers/splazers.cpp:50: @@ -24223,6 +24300,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +Scanning dependencies of target stellar +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 4%] Building CXX object apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/stellar.dir/stellar.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:55, from /build/seqan2-2.4.0+dfsg/apps/splazers/razers.h:28, from /build/seqan2-2.4.0+dfsg/apps/splazers/splazers.cpp:50: @@ -24364,14 +24447,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/parallel/algorithm:34, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/join.cpp:48: -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = seqan::Pair >*; _Distance = long int; _Tp = seqan::Pair >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::StringSet, seqan::Alloc > >, seqan::Owner > > > >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'seqan::Pair >' changed in GCC 9.1 - 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44, @@ -24952,8 +25027,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = seqan::Pair >*; _Distance = long int; _Tp = seqan::Pair >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::StringSet > >, seqan::Owner > > > >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'seqan::Pair >' changed in GCC 9.1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/stellar/stellar.cpp:24: @@ -26309,14 +26382,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/parallel/algorithm:34, - from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:48: -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = seqan::Pair >*; _Distance = long int; _Tp = seqan::Pair >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::StringSet, seqan::Alloc > >, seqan::Owner > > > >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'seqan::Pair >' changed in GCC 9.1 - 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -26503,8 +26568,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = seqan::Pair >*; _Distance = long int; _Tp = seqan::Pair >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::StringSet > >, seqan::Owner > > > >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'seqan::Pair >' changed in GCC 9.1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, @@ -27169,8 +27232,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = seqan::Pair >*; _Distance = long int; _Tp = seqan::Pair >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::StringSet, seqan::Alloc > >, seqan::Owner > > > >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'seqan::Pair >' changed in GCC 9.1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44, @@ -27317,8 +27378,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = seqan::Pair >*; _Distance = long int; _Tp = seqan::Pair >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::StringSet > >, seqan::Owner > > > >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'seqan::Pair >' changed in GCC 9.1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44, @@ -27644,6 +27703,14 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/parallel/algorithm:34, + from /build/seqan2-2.4.0+dfsg/apps/searchjoin/search.cpp:48: +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = seqan::Pair >*; _Distance = long int; _Tp = seqan::Pair >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::StringSet, seqan::Alloc > >, seqan::Owner > > > >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'seqan::Pair >' changed in GCC 9.1 + 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:44, @@ -28645,6 +28712,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = seqan::Pair >*; _Distance = long int; _Tp = seqan::Pair >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::StringSet > >, seqan::Owner > > > >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'seqan::Pair >' changed in GCC 9.1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -29593,11 +29662,11 @@ /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'seqan::Pair >' changed in GCC 9.1 [ 4%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/seqcons2/seqcons_options.cpp -[ 5%] Linking CXX executable ../../bin/snp_store -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../bin/snp_store -lrt -lz -lbz2 +[ 4%] Linking CXX executable ../../bin/s4_join +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_join.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/s4_join.dir/join.cpp.o -o ../../bin/s4_join -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 5%] Built target snp_store +[ 4%] Built target s4_join make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/tree_recon /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/tree_recon /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= @@ -29607,13 +29676,13 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 5%] Building CXX object apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o +[ 4%] Building CXX object apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/tree_recon && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/tree_recon/tree_recon.cpp -[ 5%] Linking CXX executable ../../bin/s4_join -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_join.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/s4_join.dir/join.cpp.o -o ../../bin/s4_join -lrt -lz -lbz2 +[ 5%] Linking CXX executable ../../bin/snp_store +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../bin/snp_store -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 5%] Built target s4_join +[ 5%] Built target snp_store make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/yara /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_mapper.dir/DependInfo.cmake --color= @@ -29634,47 +29703,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 5%] Linking CXX executable ../../bin/s4_search -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_search.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/s4_search.dir/search.cpp.o -o ../../bin/s4_search -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 5%] Built target s4_search -make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/yara /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_indexer.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_indexer.dir/depend.internal". -Scanning dependencies of target yara_indexer -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 5%] Building CXX object apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.9.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DYARA_LARGE_CONTIGS=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/yara_indexer.dir/indexer.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp -[ 5%] Linking CXX executable ../../bin/seqcons2 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/seqcons2.dir/seqcons.cpp.o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -o ../../bin/seqcons2 -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 5%] Built target seqcons2 -make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/depend.internal". -Scanning dependencies of target test_align_simd_local_variable_length -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 5%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_variable_length.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -29745,318 +29773,47 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_variable_length.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource1 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource2 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Owner<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::Tag >, seqan::Owner<> >&; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:91:36: required from 'void SimdAlignTestCommon__Dynamic_Score_Matrix_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:80:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_variable_length.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_variable_length.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource1 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource2 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Owner<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::Tag >, seqan::Owner<> >&; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:74:30: required from 'void SimdAlignTestCommon__Affine_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:68:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_variable_length.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/apps/yara/store_seqs.h:209:20: required from 'void trimSeqNames(SeqStore&) [with TSpec = void; TConfig = YaraContigsConfig<>]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:201:21: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/apps/yara/store_seqs.h:209:34: required from 'void trimSeqNames(SeqStore&) [with TSpec = void; TConfig = YaraContigsConfig<>]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:201:21: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/apps/yara/store_seqs.h:209:34: required from 'void trimSeqNames(SeqStore&) [with TSpec = void; TConfig = YaraContigsConfig<>]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:201:21: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, +[ 5%] Linking CXX executable ../../bin/seqcons2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/seqcons2.dir/seqcons.cpp.o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -o ../../bin/seqcons2 -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 5%] Built target seqcons2 +make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/yara /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_indexer.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_indexer.dir/depend.internal". +Scanning dependencies of target yara_indexer +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 5%] Building CXX object apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.9.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DYARA_LARGE_CONTIGS=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/yara_indexer.dir/indexer.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp +[ 5%] Linking CXX executable ../../bin/tree_recon +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../bin/tree_recon -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 5%] Built target tree_recon +make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/depend.internal". +Scanning dependencies of target test_align_simd_local_variable_length +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 5%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_variable_length.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:91: /build/seqan2-2.4.0+dfsg/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' @@ -30083,6 +29840,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(seqan::StringSet >&, typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 5%] Linking CXX executable ../../bin/s4_search +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/s4_search.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/s4_search.dir/search.cpp.o -o ../../bin/s4_search -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:91: /build/seqan2-2.4.0+dfsg/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' @@ -30655,6 +30415,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(seqan::StringSet >&, typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 5%] Built target s4_search +make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:91: /build/seqan2-2.4.0+dfsg/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, long unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, long unsigned int, long unsigned int, seqan::MMap<>, 3>]' @@ -30681,6 +30446,14 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(seqan::StringSet >&, typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/depend.internal". +Scanning dependencies of target test_align_simd_local_equal_length +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 5%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_equal_length.cpp In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:91: /build/seqan2-2.4.0+dfsg/apps/yara/mapper.h: In instantiation of 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]': /build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' @@ -31305,6 +31078,318 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:294:94: note: initializing argument 2 of 'void seqan::setHost(seqan::StringSet >&, typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' 294 | inline void setHost(StringSet > & me, typename Parameter_::Type host) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/apps/yara/store_seqs.h:209:20: required from 'void trimSeqNames(SeqStore&) [with TSpec = void; TConfig = YaraContigsConfig<>]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:201:21: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/apps/yara/store_seqs.h:209:34: required from 'void trimSeqNames(SeqStore&) [with TSpec = void; TConfig = YaraContigsConfig<>]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:201:21: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_variable_length.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource1 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource2 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Owner<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::Tag >, seqan::Owner<> >&; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:91:36: required from 'void SimdAlignTestCommon__Dynamic_Score_Matrix_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:80:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_variable_length.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_variable_length.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource1 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource2 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Owner<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::Tag >, seqan::Owner<> >&; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:74:30: required from 'void SimdAlignTestCommon__Affine_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:68:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_variable_length.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/apps/yara/store_seqs.h:209:34: required from 'void trimSeqNames(SeqStore&) [with TSpec = void; TConfig = YaraContigsConfig<>]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:201:21: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:195:14: required from 'void loadContigs(YaraIndexer&) [with TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:357:24: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:49: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, @@ -31330,156 +31415,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner > > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > > > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:360:22: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner > > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > > > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = long unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = long unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:321:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:360:22: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner > > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > > > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:337:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:360:22: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner > > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > > > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = long unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = long unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:321:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:337:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:360:22: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner > > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > > > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:342:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:360:22: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner > > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > > > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned int; TContigsLen = long unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned int; TContigsLen = long unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:321:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned int; TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:342:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:360:22: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >, seqan::Alloc<> >; TSpec = seqan::SuffixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': @@ -31756,6 +31691,787 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/write_sam.h:114:14: required from 'void seqan::write(TTarget&, const BamHeader&, const seqan::BamIOContext&, const Sam&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TNameStore = seqan::StringSet >, seqan::Owner > > >; TNameStoreCache = seqan::NameStoreCache >, seqan::Owner > > >, seqan::String > >; TStorageSpec = seqan::Dependent >; seqan::BamHeader = seqan::String; seqan::Sam = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:293:14: required from 'void seqan::write(TTarget&, const BamHeader&, seqan::BamIOContext&, const seqan::TagSelector&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TNameStore = seqan::StringSet >, seqan::Owner > > >; TNameStoreCache = seqan::NameStoreCache >, seqan::Owner > > >, seqan::String > >; TStorageSpec = seqan::Dependent >; TTagList = seqan::TagList >; seqan::BamHeader = seqan::String]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:295:14: required from 'void seqan::write(TTarget&, const BamHeader&, seqan::BamIOContext&, const seqan::TagSelector&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TNameStore = seqan::StringSet >, seqan::Owner > > >; TNameStoreCache = seqan::NameStoreCache >, seqan::Owner > > >, seqan::String > >; TStorageSpec = seqan::Dependent >; TTagList = seqan::TagList, seqan::TagList > >; seqan::BamHeader = seqan::String]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:303:10: required from 'void seqan::writeHeader(seqan::FormattedFile, seqan::Tag, TSpec>&, const BamHeader&) [with TSpec = seqan::StringSet >, seqan::Owner > > >; seqan::BamHeader = seqan::String]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:515:16: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/file_prefetched.h:151:13: required from 'bool seqan::open(seqan::PrefetchedFile >&, const char*) [with TFile = seqan::FormattedFile, seqan::Tag >; TRecords = SeqStore >]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:408:14: required from 'void _openReadsImpl(Mapper&, SingleEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; SingleEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:402:19: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; TIntegral = long unsigned int]': +/build/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_algorithms.h:244:37: required from 'void seqan::iterate(TContainer&, TFunctor, const seqan::Tag&, seqan::Parallel) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TFunctor = ReadsClassifier, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >; TIterTag = seqan::Rooted_; seqan::Parallel = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:114:12: required from 'void _classifyReadsImpl(ReadsClassifier&, Strata) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:76:27: required from 'ReadsClassifier::ReadsClassifier(ReadsClassifier::TReadsContext&, ReadsClassifier::THits&, const TSeeds&, const Options&) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::TReadsContext = ReadsContext, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::THits = seqan::String >, seqan::Alloc<> >; ReadsClassifier::TSeeds = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >, seqan::Segment, seqan::Alloc<> >, seqan::Owner > > > >]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:656:17: required from 'void classifyReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1288:18: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] + 577 | return Iter >(container(left), hostIterator(left) + right); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_algorithms.h:244:14: required from 'void seqan::iterate(TContainer&, TFunctor, const seqan::Tag&, seqan::Parallel) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TFunctor = ReadsClassifier, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >; TIterTag = seqan::Rooted_; seqan::Parallel = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:114:12: required from 'void _classifyReadsImpl(ReadsClassifier&, Strata) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:76:27: required from 'ReadsClassifier::ReadsClassifier(ReadsClassifier::TReadsContext&, ReadsClassifier::THits&, const TSeeds&, const Options&) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::TReadsContext = ReadsContext, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::THits = seqan::String >, seqan::Alloc<> >; ReadsClassifier::TSeeds = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >, seqan::Segment, seqan::Alloc<> >, seqan::Owner > > > >]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:656:17: required from 'void classifyReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1288:18: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_equal_length.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource1 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource2 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Owner<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::Tag >, seqan::Owner<> >&; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:91:36: required from 'void SimdAlignTestCommon__Dynamic_Score_Matrix_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:80:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_equal_length.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_equal_length.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource1 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource2 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Owner<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::Tag >, seqan::Owner<> >&; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:74:30: required from 'void SimdAlignTestCommon__Affine_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:68:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_equal_length.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 358 | return _object; + | ^~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 358 | return _object; + | ^~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, long unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, long unsigned int, unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, long unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:365:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 358 | return _object; + | ^~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, long unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, long unsigned int, long unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, long unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:365:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 358 | return _object; + | ^~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 358 | return _object; + | ^~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 358 | return _object; + | ^~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, long unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, long unsigned int, unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, long unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:365:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 358 | return _object; + | ^~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, long unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, long unsigned int, long unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, long unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:365:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 358 | return _object; + | ^~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:386:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 358 | return _object; + | ^~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:386:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 358 | return _object; + | ^~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, long unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, long unsigned int, unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, long unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TContigsLen = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:365:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:386:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 358 | return _object; + | ^~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, long unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, long unsigned int, long unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, long unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TContigsLen = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:365:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:386:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 358 | return _object; + | ^~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/file_prefetched.h:151:13: required from 'bool seqan::open(seqan::PrefetchedFile >&, const char*) [with TFile = seqan::FormattedFile, seqan::Tag >; TRecords = SeqStore >]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:408:14: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_algorithms.h:244:24: required from 'void seqan::iterate(TContainer&, TFunctor, const seqan::Tag&, seqan::Parallel) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TFunctor = ReadsClassifier, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >; TIterTag = seqan::Rooted_; seqan::Parallel = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:114:12: required from 'void _classifyReadsImpl(ReadsClassifier&, Strata) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:76:27: required from 'ReadsClassifier::ReadsClassifier(ReadsClassifier::TReadsContext&, ReadsClassifier::THits&, const TSeeds&, const Options&) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::TReadsContext = ReadsContext, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::THits = seqan::String >, seqan::Alloc<> >; ReadsClassifier::TSeeds = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >, seqan::Segment, seqan::Alloc<> >, seqan::Owner > > > >]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:656:17: required from 'void classifyReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1288:18: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] + 343 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner > > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > > > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:360:22: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/write_sam.h:114:14: required from 'void seqan::write(TTarget&, const BamHeader&, const seqan::BamIOContext&, const Sam&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TNameStore = seqan::StringSet >, seqan::Owner > > >; TNameStoreCache = seqan::NameStoreCache >, seqan::Owner > > >, seqan::String > >; TStorageSpec = seqan::Dependent >; seqan::BamHeader = seqan::String; seqan::Sam = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:293:14: required from 'void seqan::write(TTarget&, const BamHeader&, seqan::BamIOContext&, const seqan::TagSelector&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TNameStore = seqan::StringSet >, seqan::Owner > > >; TNameStoreCache = seqan::NameStoreCache >, seqan::Owner > > >, seqan::String > >; TStorageSpec = seqan::Dependent >; TTagList = seqan::TagList >; seqan::BamHeader = seqan::String]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:295:14: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/file_prefetched.h:151:13: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: required from 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; TIntegral = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_algorithms.h:244:37: required from 'void seqan::iterate(TContainer&, TFunctor, const seqan::Tag&, seqan::Parallel) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TFunctor = ReadsClassifier, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >; TIterTag = seqan::Rooted_; seqan::Parallel = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:114:12: required from 'void _classifyReadsImpl(ReadsClassifier&, Strata) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; Strata = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:76:27: required from 'ReadsClassifier::ReadsClassifier(ReadsClassifier::TReadsContext&, ReadsClassifier::THits&, const TSeeds&, const Options&) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::TReadsContext = ReadsContext, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::THits = seqan::String >, seqan::Alloc<> >; ReadsClassifier::TSeeds = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >, seqan::Segment, seqan::Alloc<> >, seqan::Owner > > > >]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:656:17: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner > > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > > > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = long unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TContigsLen = long unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:321:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned char; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:333:27: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:360:22: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:216:27: required from 'void seqan::setCargo(seqan::ModifiedString >&, typename seqan::Parameter_::Type) [with THost = seqan::String >, seqan::Alloc<> >; TPositions = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:357:13: required from 'typename seqan::Infix > >::Type seqan::infix(seqan::ModifiedString >&, TPosBegin, TPosEnd) [with THost = seqan::String >, seqan::Alloc<> >; TPositions = seqan::String >; TPosBegin = long unsigned int; TPosEnd = long unsigned int; typename seqan::Infix > >::Type = seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos >, seqan::InfixSegment> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:649:17: required from 'typename seqan::Infix::Type seqan::infixWithLength(T&&, TPosBegin, TSize) [with T = seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos > > >; TPosBegin = long unsigned int; TSize = long unsigned int; typename seqan::Infix::Type = seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos >, seqan::InfixSegment> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:489:27: required from 'typename seqan::InfixOnValue::Type seqan::value(const seqan::StringSet >&, TPos) [with THost = seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos > > >; TSpec = seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos > > >; TPos = long unsigned int; typename seqan::InfixOnValue::Type = const seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos >, seqan::InfixSegment> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:215:17: required from 'typename seqan::Reference > > >::Type seqan::value(const seqan::Iter > >&) [with TContainer = const seqan::StringSet >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::Segment >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::InfixSegment> >; typename seqan::Reference > > >::Type = const seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos >, seqan::InfixSegment> > >]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:885:53: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner > > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > > > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:337:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:360:22: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner > > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > > > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = long unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TContigsLen = long unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:321:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = short unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:337:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:360:22: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner > > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > > > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned int; TContigsLen = unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned int; TContigsLen = unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:316:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:342:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:360:22: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner > > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > > > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > > > >, seqan::FMIndex > > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:267:53: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned int; TContigsLen = long unsigned int; TContigsSum = unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:303:55: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned int; TContigsLen = long unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:321:42: required from 'void saveIndex(YaraIndexer&) [with TContigsSize = unsigned int; TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:342:28: required from 'void saveIndex(YaraIndexer&) [with TSpec = void; TConfig = void]' +/build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:360:22: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:48: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: @@ -32081,115 +32797,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/write_sam.h:114:14: required from 'void seqan::write(TTarget&, const BamHeader&, const seqan::BamIOContext&, const Sam&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TNameStore = seqan::StringSet >, seqan::Owner > > >; TNameStoreCache = seqan::NameStoreCache >, seqan::Owner > > >, seqan::String > >; TStorageSpec = seqan::Dependent >; seqan::BamHeader = seqan::String; seqan::Sam = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:293:14: required from 'void seqan::write(TTarget&, const BamHeader&, seqan::BamIOContext&, const seqan::TagSelector&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TNameStore = seqan::StringSet >, seqan::Owner > > >; TNameStoreCache = seqan::NameStoreCache >, seqan::Owner > > >, seqan::String > >; TStorageSpec = seqan::Dependent >; TTagList = seqan::TagList >; seqan::BamHeader = seqan::String]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:295:14: required from 'void seqan::write(TTarget&, const BamHeader&, seqan::BamIOContext&, const seqan::TagSelector&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TNameStore = seqan::StringSet >, seqan::Owner > > >; TNameStoreCache = seqan::NameStoreCache >, seqan::Owner > > >, seqan::String > >; TStorageSpec = seqan::Dependent >; TTagList = seqan::TagList, seqan::TagList > >; seqan::BamHeader = seqan::String]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:303:10: required from 'void seqan::writeHeader(seqan::FormattedFile, seqan::Tag, TSpec>&, const BamHeader&) [with TSpec = seqan::StringSet >, seqan::Owner > > >; seqan::BamHeader = seqan::String]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:515:16: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/file_prefetched.h:151:13: required from 'bool seqan::open(seqan::PrefetchedFile >&, const char*) [with TFile = seqan::FormattedFile, seqan::Tag >; TRecords = SeqStore >]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:408:14: required from 'void _openReadsImpl(Mapper&, SingleEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; SingleEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:402:19: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; TIntegral = long unsigned int]': -/build/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_algorithms.h:244:37: required from 'void seqan::iterate(TContainer&, TFunctor, const seqan::Tag&, seqan::Parallel) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TFunctor = ReadsClassifier, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >; TIterTag = seqan::Rooted_; seqan::Parallel = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:114:12: required from 'void _classifyReadsImpl(ReadsClassifier&, Strata) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:76:27: required from 'ReadsClassifier::ReadsClassifier(ReadsClassifier::TReadsContext&, ReadsClassifier::THits&, const TSeeds&, const Options&) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::TReadsContext = ReadsContext, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::THits = seqan::String >, seqan::Alloc<> >; ReadsClassifier::TSeeds = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >, seqan::Segment, seqan::Alloc<> >, seqan::Owner > > > >]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:656:17: required from 'void classifyReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1288:18: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] - 577 | return Iter >(container(left), hostIterator(left) + right); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_algorithms.h:244:14: required from 'void seqan::iterate(TContainer&, TFunctor, const seqan::Tag&, seqan::Parallel) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TFunctor = ReadsClassifier, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >; TIterTag = seqan::Rooted_; seqan::Parallel = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:114:12: required from 'void _classifyReadsImpl(ReadsClassifier&, Strata) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:76:27: required from 'ReadsClassifier::ReadsClassifier(ReadsClassifier::TReadsContext&, ReadsClassifier::THits&, const TSeeds&, const Options&) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::TReadsContext = ReadsContext, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::THits = seqan::String >, seqan::Alloc<> >; ReadsClassifier::TSeeds = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >, seqan::Segment, seqan::Alloc<> >, seqan::Owner > > > >]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:656:17: required from 'void classifyReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1288:18: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: @@ -32290,6 +32897,40 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1397:14: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: @@ -32490,6 +33131,36 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:90: +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h: In instantiation of 'void setQual(seqan::BamAlignmentRecord&, const TString&) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:455:12: required from 'void _fillReadSeqQual(MatchesWriter&, TReadSeqId) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadSeqId = long unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:305:21: required from 'void _writeMappedRead(MatchesWriter&, TReadId, const TMatch&, SingleEnd) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadId = long unsigned int; TMatch = Match >; SingleEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:236:25: required from 'void _writeMatchesImpl(MatchesWriter&, const TMatchIt&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TMatchIt = seqan::Iter >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > >]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:102:26: required from 'void MatchesWriter::operator()(const TIterator&) [with TIterator = seqan::Iter >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > >; TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_algorithms.h:248:14: required from 'void seqan::iterate(TContainer&, TFunctor, const seqan::Tag&, seqan::Parallel) [with TContainer = const seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::ModPos > > >; TFunctor = MatchesWriter, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >; TIterTag = seqan::Standard_; seqan::Parallel = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:96:16: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:164:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 164 | TQualities qual(string); + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::QualityExtractor >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: @@ -32540,56 +33211,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 358 | return _object; - | ^~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 358 | return _object; - | ^~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: @@ -32640,81 +33261,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, long unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, long unsigned int, unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, long unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:365:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 358 | return _object; - | ^~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, long unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, long unsigned int, long unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, long unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:365:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 358 | return _object; - | ^~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 358 | return _object; - | ^~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: @@ -32765,56 +33311,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 358 | return _object; - | ^~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, long unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, long unsigned int, unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, long unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:365:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 358 | return _object; - | ^~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: @@ -32865,31 +33361,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, long unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, long unsigned int, long unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, short unsigned int, long unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TContigsLen = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:365:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = short unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:381:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 358 | return _object; - | ^~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: @@ -32940,56 +33411,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:386:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 358 | return _object; - | ^~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:386:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 358 | return _object; - | ^~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: @@ -33040,56 +33461,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, long unsigned int, unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, long unsigned int, unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, long unsigned int, unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TContigsLen = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:365:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:386:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 358 | return _object; - | ^~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:279:31: required from 'typename seqan::Parameter_::Type seqan::host(seqan::StringSet >&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/yara/bits_bucket.h:182:17: required from 'void seqan::bucket(seqan::StringSet >&, const TKeyGetter&, TMaxKey, const TThreading&) [with THost = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TSpec = seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>; TKeyGetter = seqan::Getter >, const seqan::Tag >; TMaxKey = long unsigned int; TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1110:11: required from 'void _verifyMatchesImpl(Mapper&, PairedEnd) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, long unsigned int, long unsigned int, seqan::MMap<>, 3>; PairedEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1081:23: required from 'void verifyMatches(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, long unsigned int, long unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1328:22: required from 'void _mapReadsImpl(Mapper&, TReadSeqs&, Strata) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned int, long unsigned int, long unsigned int, seqan::MMap<>, 3>; TReadSeqs = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1237:18: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:351:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TContigsLen = long unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:365:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:386:34: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:415:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_type.h:358:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 358 | return _object; - | ^~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >, seqan::Alloc<> >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: @@ -33190,6 +33561,118 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:81: +/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h: In instantiation of 'bool _extendLeft(Extender, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TMaxErrors = long unsigned int]': +/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:413:25: required from 'void extend(Extender&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag; TSpec = void; THaystackPos = seqan::Pair >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:216:15: required from 'void _extendHitImpl(HitsExtender&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit >*; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:112:23: required from 'void HitsExtender::operator()(const THitsIterator&) [with THitsIterator = const Hit >*; TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_algorithms.h:248:14: required from 'void seqan::iterate(TContainer&, TFunctor, const seqan::Tag&, seqan::Parallel) [with TContainer = const seqan::String >, seqan::Alloc<> >; TFunctor = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >; TIterTag = seqan::Standard_; seqan::Parallel = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:134:12: required from 'void _extendHitsImpl(HitsExtender&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:106:24: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:220:25: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 220 | TNeedleInfixRev needleInfixRev(needleInfix); + | ^~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:81: +/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:221:27: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 221 | THaystackInfixRev haystackInfixRev(haystackInfix); + | ^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:81: +/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:241:21: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 241 | TNeedleInfixRev needleInfixRev(needleInfix); + | ^~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:81: +/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:242:23: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 242 | THaystackInfixRev haystackInfixRev(haystackInfix); + | ^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:81: +/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h: In instantiation of 'bool _extendRight(Extender, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TMaxErrors = long unsigned int]': +/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:429:26: required from 'void extend(Extender&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag; TSpec = void; THaystackPos = seqan::Pair >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:216:15: required from 'void _extendHitImpl(HitsExtender&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit >*; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:112:23: required from 'void HitsExtender::operator()(const THitsIterator&) [with THitsIterator = const Hit >*; TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_algorithms.h:248:14: required from 'void seqan::iterate(TContainer&, TFunctor, const seqan::Tag&, seqan::Parallel) [with TContainer = const seqan::String >, seqan::Alloc<> >; TFunctor = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >; TIterTag = seqan::Standard_; seqan::Parallel = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:134:12: required from 'void _extendHitsImpl(HitsExtender&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:106:24: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:311:20: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 311 | THaystackInfix haystackPrefix(haystackInfix); + | ^~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:81: +/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:312:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 312 | TNeedleInfix needlePrefix(needleInfix); + | ^~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: @@ -33265,18 +33748,41 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/write_sam.h:114:14: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/file_prefetched.h:151:13: required from 'bool seqan::open(seqan::PrefetchedFile >&, const char*) [with TFile = seqan::FormattedFile, seqan::Tag >; TRecords = SeqStore >]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:408:14: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:402:19: required from 'void openReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1397:14: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' @@ -33299,35 +33805,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_algorithms.h:244:24: required from 'void seqan::iterate(TContainer&, TFunctor, const seqan::Tag&, seqan::Parallel) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TFunctor = ReadsClassifier, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >; TIterTag = seqan::Rooted_; seqan::Parallel = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:114:12: required from 'void _classifyReadsImpl(ReadsClassifier&, Strata) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:76:27: required from 'ReadsClassifier::ReadsClassifier(ReadsClassifier::TReadsContext&, ReadsClassifier::THits&, const TSeeds&, const Options&) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::TReadsContext = ReadsContext, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::THits = seqan::String >, seqan::Alloc<> >; ReadsClassifier::TSeeds = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >, seqan::Segment, seqan::Alloc<> >, seqan::Owner > > > >]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:656:17: required from 'void classifyReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1288:18: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] - 343 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: @@ -33697,6 +34174,29 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::QualityExtractor >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:164:16: required from 'void setQual(seqan::BamAlignmentRecord&, const TString&) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:455:12: required from 'void _fillReadSeqQual(MatchesWriter&, TReadSeqId) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadSeqId = long unsigned int]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:305:21: required from 'void _writeMappedRead(MatchesWriter&, TReadId, const TMatch&, SingleEnd) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadId = long unsigned int; TMatch = Match >; SingleEnd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:236:25: required from 'void _writeMatchesImpl(MatchesWriter&, const TMatchIt&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TMatchIt = seqan::Iter >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > >]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:102:26: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/yara/indexer.cpp:50: @@ -33795,387 +34295,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/write_sam.h:114:14: required from 'void seqan::write(TTarget&, const BamHeader&, const seqan::BamIOContext&, const Sam&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TNameStore = seqan::StringSet >, seqan::Owner > > >; TNameStoreCache = seqan::NameStoreCache >, seqan::Owner > > >, seqan::String > >; TStorageSpec = seqan::Dependent >; seqan::BamHeader = seqan::String; seqan::Sam = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:293:14: required from 'void seqan::write(TTarget&, const BamHeader&, seqan::BamIOContext&, const seqan::TagSelector&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TNameStore = seqan::StringSet >, seqan::Owner > > >; TNameStoreCache = seqan::NameStoreCache >, seqan::Owner > > >, seqan::String > >; TStorageSpec = seqan::Dependent >; TTagList = seqan::TagList >; seqan::BamHeader = seqan::String]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_file.h:295:14: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:57: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/yara/file_prefetched.h:151:13: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: required from 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; TIntegral = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_algorithms.h:244:37: required from 'void seqan::iterate(TContainer&, TFunctor, const seqan::Tag&, seqan::Parallel) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>; TFunctor = ReadsClassifier, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >; TIterTag = seqan::Rooted_; seqan::Parallel = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:114:12: required from 'void _classifyReadsImpl(ReadsClassifier&, Strata) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; Strata = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_classifier.h:76:27: required from 'ReadsClassifier::ReadsClassifier(ReadsClassifier::TReadsContext&, ReadsClassifier::THits&, const TSeeds&, const Options&) [with TSpec = void; TConfig = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::TReadsContext = ReadsContext, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; ReadsClassifier::THits = seqan::String >, seqan::Alloc<> >; ReadsClassifier::TSeeds = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >, seqan::Segment, seqan::Alloc<> >, seqan::Owner > > > >]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:656:17: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::Owner > >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:216:27: required from 'void seqan::setCargo(seqan::ModifiedString >&, typename seqan::Parameter_::Type) [with THost = seqan::String >, seqan::Alloc<> >; TPositions = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_position.h:357:13: required from 'typename seqan::Infix > >::Type seqan::infix(seqan::ModifiedString >&, TPosBegin, TPosEnd) [with THost = seqan::String >, seqan::Alloc<> >; TPositions = seqan::String >; TPosBegin = long unsigned int; TPosEnd = long unsigned int; typename seqan::Infix > >::Type = seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos >, seqan::InfixSegment> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:649:17: required from 'typename seqan::Infix::Type seqan::infixWithLength(T&&, TPosBegin, TSize) [with T = seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos > > >; TPosBegin = long unsigned int; TSize = long unsigned int; typename seqan::Infix::Type = seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos >, seqan::InfixSegment> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_segment.h:489:27: required from 'typename seqan::InfixOnValue::Type seqan::value(const seqan::StringSet >&, TPos) [with THost = seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos > > >; TSpec = seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos > > >; TPos = long unsigned int; typename seqan::InfixOnValue::Type = const seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos >, seqan::InfixSegment> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:215:17: required from 'typename seqan::Reference > > >::Type seqan::value(const seqan::Iter > >&) [with TContainer = const seqan::StringSet >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::Segment >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::InfixSegment> >; typename seqan::Reference > > >::Type = const seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos >, seqan::InfixSegment> > >]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:885:53: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -[ 5%] Linking CXX executable ../../bin/tree_recon -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../bin/tree_recon -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 5%] Built target tree_recon -make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/depend.internal". -Scanning dependencies of target test_align_simd_local_equal_length -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 5%] Building CXX object tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_equal_length.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1397:14: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:90: -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h: In instantiation of 'void setQual(seqan::BamAlignmentRecord&, const TString&) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:455:12: required from 'void _fillReadSeqQual(MatchesWriter&, TReadSeqId) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadSeqId = long unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:305:21: required from 'void _writeMappedRead(MatchesWriter&, TReadId, const TMatch&, SingleEnd) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadId = long unsigned int; TMatch = Match >; SingleEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:236:25: required from 'void _writeMatchesImpl(MatchesWriter&, const TMatchIt&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TMatchIt = seqan::Iter >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > >]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:102:26: required from 'void MatchesWriter::operator()(const TIterator&) [with TIterator = seqan::Iter >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > >; TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_algorithms.h:248:14: required from 'void seqan::iterate(TContainer&, TFunctor, const seqan::Tag&, seqan::Parallel) [with TContainer = const seqan::ModifiedString >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::ModPos > > >; TFunctor = MatchesWriter, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >; TIterTag = seqan::Standard_; seqan::Parallel = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:96:16: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:164:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 164 | TQualities qual(string); - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::QualityExtractor >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:81: -/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h: In instantiation of 'bool _extendLeft(Extender, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TMaxErrors = long unsigned int]': -/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:413:25: required from 'void extend(Extender&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag; TSpec = void; THaystackPos = seqan::Pair >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:216:15: required from 'void _extendHitImpl(HitsExtender&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit >*; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:112:23: required from 'void HitsExtender::operator()(const THitsIterator&) [with THitsIterator = const Hit >*; TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_algorithms.h:248:14: required from 'void seqan::iterate(TContainer&, TFunctor, const seqan::Tag&, seqan::Parallel) [with TContainer = const seqan::String >, seqan::Alloc<> >; TFunctor = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >; TIterTag = seqan::Standard_; seqan::Parallel = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:134:12: required from 'void _extendHitsImpl(HitsExtender&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:106:24: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:220:25: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 220 | TNeedleInfixRev needleInfixRev(needleInfix); - | ^~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:81: -/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:221:27: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 221 | THaystackInfixRev haystackInfixRev(haystackInfix); - | ^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:81: -/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:241:21: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 241 | TNeedleInfixRev needleInfixRev(needleInfix); - | ^~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:81: -/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:242:23: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 242 | THaystackInfixRev haystackInfixRev(haystackInfix); - | ^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:81: -/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h: In instantiation of 'bool _extendRight(Extender, TSpec>&, THaystackInfix&, TNeedleInfix&, THaystackPos&, TErrors&, TMaxErrors) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; THaystackInfix = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TNeedleInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THaystackPos = seqan::Pair >; TErrors = long unsigned int; TMaxErrors = long unsigned int]': -/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:429:26: required from 'void extend(Extender&, const TNeedle&, THaystackPos, THaystackPos, TNeedlePos, TNeedlePos, TErrors, TMaxErrors, TDelegate&&) [with THaystack = seqan::StringSet, seqan::Packed > >, seqan::Owner > > >; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDistance = seqan::Tag; TSpec = void; THaystackPos = seqan::Pair >; TNeedlePos = long unsigned int; TErrors = long unsigned int; TMaxErrors = long unsigned int; TDelegate = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >&]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:216:15: required from 'void _extendHitImpl(HitsExtender&, const THitsIterator&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; THitsIterator = const Hit >*; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:112:23: required from 'void HitsExtender::operator()(const THitsIterator&) [with THitsIterator = const Hit >*; TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/parallel/parallel_algorithms.h:248:14: required from 'void seqan::iterate(TContainer&, TFunctor, const seqan::Tag&, seqan::Parallel) [with TContainer = const seqan::String >, seqan::Alloc<> >; TFunctor = HitsExtender, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> > >; TIterTag = seqan::Standard_; seqan::Parallel = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:134:12: required from 'void _extendHitsImpl(HitsExtender&, const TStrategy&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_extender.h:106:24: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:402:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:311:20: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 311 | THaystackInfix haystackPrefix(haystackInfix); - | ^~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:81: -/build/seqan2-2.4.0+dfsg/apps/yara/find_extender.h:312:18: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 312 | TNeedleInfix needlePrefix(needleInfix); - | ^~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, std::char_traits >, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/write_sam.h:114:14: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:402:19: required from 'void openReads(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1397:14: required from 'void runMapper(Mapper&) [with TSpec = void; TConfig = ReadMapperConfig, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.h:1432:14: required from 'void spawnMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TContigsSum = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:59: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::QualityExtractor >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:164:16: required from 'void setQual(seqan::BamAlignmentRecord&, const TString&) [with TString = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:455:12: required from 'void _fillReadSeqQual(MatchesWriter&, TReadSeqId) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadSeqId = long unsigned int]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:305:21: required from 'void _writeMappedRead(MatchesWriter&, TReadId, const TMatch&, SingleEnd) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TReadId = long unsigned int; TMatch = Match >; SingleEnd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:236:25: required from 'void _writeMatchesImpl(MatchesWriter&, const TMatchIt&) [with TSpec = void; Traits = MapperTraits, seqan::Tag, seqan::Tag, unsigned char, unsigned int, unsigned int, seqan::MMap<>, 3> >; TMatchIt = seqan::Iter >, seqan::Alloc<> >, seqan::ModPos > > >, seqan::ModPos > > >, seqan::CountingIteratorImpl_ > >]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper_writer.h:102:26: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:347:57: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TContigsLen = unsigned int; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:360:48: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TContigsSize = unsigned char; TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:377:33: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&, const TStrategy&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag; TStrategy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:399:31: required from 'void configureMapper(const Options&, const TThreading&, const TSequencing&) [with TThreading = seqan::Tag; TSequencing = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:413:24: required from 'void configureMapper(const Options&, const TThreading&) [with TThreading = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:422:44: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/apps/yara/mapper.cpp:58: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': @@ -34487,56 +34606,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Packed > >, seqan::Packed > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_equal_length.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource1 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource2 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Owner<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::Tag >, seqan::Owner<> >&; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:91:36: required from 'void SimdAlignTestCommon__Dynamic_Score_Matrix_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:80:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_equal_length.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_equal_length.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource1 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource2 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Owner<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::Tag >, seqan::Owner<> >&; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::LocalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig<>; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:74:30: required from 'void SimdAlignTestCommon__Affine_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local.h:68:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_local_equal_length.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:72:7: required from 'void seqan::compare_(seqan::Lexical&, TLeft&, TRight&) [with TSpec = long unsigned int; TLeft = const seqan::ModifiedString, seqan::Packed > >, seqan::InfixSegment>, seqan::Tag >; TRight = const seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_lexical.h:323:13: required from 'void seqan::compare(seqan::Lexical&, const TLeft&, const TRight&) [with TSpec = long unsigned int; TLeft = seqan::ModifiedString, seqan::Packed > >, seqan::InfixSegment>, seqan::Tag >; TRight = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >]' @@ -34903,11 +34972,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -[ 5%] Linking CXX executable ../../bin/splazers -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/splazers.dir/splazers.cpp.o -o ../../bin/splazers -lrt -lz -lbz2 +[ 5%] Linking CXX executable ../../bin/seqan_tcoffee +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../bin/seqan_tcoffee -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 5%] Built target splazers +[ 5%] Built target seqan_tcoffee make -f tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/DependInfo.cmake --color= @@ -34919,11 +34988,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 5%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_variable_length.cpp -[ 5%] Linking CXX executable ../../bin/seqan_tcoffee -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../bin/seqan_tcoffee -lrt -lz -lbz2 +[ 6%] Linking CXX executable ../../bin/test_align_simd_local_variable_length +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_variable_length.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o -o ../../bin/test_align_simd_local_variable_length -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 5%] Built target seqan_tcoffee +[ 6%] Built target test_align_simd_local_variable_length make -f tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/DependInfo.cmake --color= @@ -34933,13 +35002,13 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 5%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o +[ 6%] Building CXX object tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_equal_length.cpp -[ 6%] Linking CXX executable ../../bin/test_align_simd_local_variable_length -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_variable_length.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_variable_length.dir/test_align_simd_local_variable_length.cpp.o -o ../../bin/test_align_simd_local_variable_length -lrt -lz -lbz2 +[ 6%] Linking CXX executable ../../bin/splazers +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/splazers.dir/splazers.cpp.o -o ../../bin/splazers -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 6%] Built target test_align_simd_local_variable_length +[ 6%] Built target splazers make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align.dir/DependInfo.cmake --color= @@ -34951,6 +35020,9 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 6%] Building CXX object tests/align/CMakeFiles/test_align.dir/test_align.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align.dir/test_align.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp +[ 6%] Linking CXX executable ../../bin/stellar +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/stellar.dir/stellar.cpp.o -o ../../bin/stellar -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_variable_length.cpp:35: @@ -35001,9 +35073,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ -[ 6%] Linking CXX executable ../../bin/stellar -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/stellar.dir/stellar.cpp.o -o ../../bin/stellar -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 6%] Built target stellar make -f tests/align_extend/CMakeFiles/test_align_extend.dir/build.make tests/align_extend/CMakeFiles/test_align_extend.dir/depend @@ -35017,6 +35086,82 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 6%] Building CXX object tests/align_extend/CMakeFiles/test_align_extend.dir/test_align_extend.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_extend && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_extend.dir/test_align_extend.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' + 2048 | (_arg1), # _arg1, \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, + from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:42, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, + from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:42, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h: In instantiation of 'void SEQAN_TEST_test_align_extend_semiglobal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:49:5: required from here +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:558:16: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 558 | TAlign align(alignOrig); + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:41, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:586:16: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 586 | TAlign align(alignOrig); + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:41, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:620:16: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 620 | TAlign align(alignOrig); + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:41, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:83, from /build/seqan2-2.4.0+dfsg/tests/align/test_align_stream.h:40, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:38: @@ -35105,6 +35250,426 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 294 | ModifiedString const r_inf0(inf0); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 295 | ModifiedString const r_inf1(inf1); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 294 | ModifiedString const r_inf0(inf0); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 295 | ModifiedString const r_inf1(inf1); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::Segment >, seqan::InfixSegment>; TString1 = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:504:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:178:36: required from 'void SEQAN_TEST_test_align_extend_simple_infixes_recomp() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:45:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 294 | ModifiedString const r_inf0(inf0); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 295 | ModifiedString const r_inf1(inf1); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::Segment >, seqan::InfixSegment>; TString1 = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:504:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:178:36: required from 'void SEQAN_TEST_test_align_extend_simple_infixes_recomp() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:45:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 294 | ModifiedString const r_inf0(inf0); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 295 | ModifiedString const r_inf1(inf1); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 294 | ModifiedString const r_inf0(inf0); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 295 | ModifiedString const r_inf1(inf1); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 294 | ModifiedString const r_inf0(inf0); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 295 | ModifiedString const r_inf1(inf1); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:569:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const TScoreValue&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:415:24: required from 'void SEQAN_TEST_test_align_extend_xdrop() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:47:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 294 | ModifiedString const r_inf0(inf0); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 295 | ModifiedString const r_inf1(inf1); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:569:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const TScoreValue&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:415:24: required from 'void SEQAN_TEST_test_align_extend_xdrop() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:47:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 294 | ModifiedString const r_inf0(inf0); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 295 | ModifiedString const r_inf1(inf1); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:603:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:514:24: required from 'void SEQAN_TEST_test_align_extend_xdrop_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:48:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 294 | ModifiedString const r_inf0(inf0); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 295 | ModifiedString const r_inf1(inf1); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:603:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:514:24: required from 'void SEQAN_TEST_test_align_extend_xdrop_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:48:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 294 | ModifiedString const r_inf0(inf0); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 295 | ModifiedString const r_inf1(inf1); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:189, from /build/seqan2-2.4.0+dfsg/tests/align/test_align_stream.h:40, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:38: @@ -35169,6 +35734,26 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:177, from /build/seqan2-2.4.0+dfsg/tests/align/test_align_stream.h:40, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:38: @@ -35413,6 +35998,27 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment >, seqan::InfixSegment>; TValue2 = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Segment >, seqan::InfixSegment>; typename seqan::Reference > >::Type = seqan::Segment >, seqan::InfixSegment>&]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:427:10: required from 'void seqan::assignSource(seqan::Gaps >&, const TSequence2&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TSequence2 = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:59:21: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:183, from /build/seqan2-2.4.0+dfsg/tests/align/test_align_stream.h:40, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:38: @@ -35425,6 +36031,54 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:554:20: required from 'void SEQAN_TEST_test_align_extend_semiglobal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:49:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:554:20: required from 'void SEQAN_TEST_test_align_extend_semiglobal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:49:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 647 | return Iter >(container(left), hostIterator(left) - right); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:35: @@ -35493,6 +36147,114 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> > >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> > >]' 91 | Iter(Iter const & other) : | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:554:20: required from 'void SEQAN_TEST_test_align_extend_semiglobal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:49:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:554:20: required from 'void SEQAN_TEST_test_align_extend_semiglobal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:49:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 486 | return TIterator(me, end(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, int) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::AlignExtend_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; seqan::NavigateColumnWiseBanded = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::AlignExtend_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::AlignExtend_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn<>; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:157:33: required from 'TScoreValue seqan::_setUpAndRunAlignImpl(TAliExtContext_&, const TString0&, const TString1&, const seqan::Score&, int, int, TScoreValue, const TTracebackConfig&, const seqan::True&, const seqan::False&) [with TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >; TString0 = seqan::Segment >, seqan::InfixSegment>; TString1 = seqan::Segment >, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:351:43: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 586 | return Iter >(container(left), hostIterator(left) + right); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; TIntegral = long int]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:634:69: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::AlignExtend_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; seqan::NavigateColumnWiseBanded = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::AlignExtend_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::AlignExtend_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn<>; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:157:33: required from 'TScoreValue seqan::_setUpAndRunAlignImpl(TAliExtContext_&, const TString0&, const TString1&, const seqan::Score&, int, int, TScoreValue, const TTracebackConfig&, const seqan::True&, const seqan::False&) [with TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >; TString0 = seqan::Segment >, seqan::InfixSegment>; TString1 = seqan::Segment >, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:351:43: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 577 | return Iter >(container(left), hostIterator(left) + right); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:60: /build/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h: In instantiation of 'bool _validateAlignment(const TAlignment&, const seqan::AlignConfig&, const TScore&, const seqan::Score >&) [with TAlignment = seqan::Align, seqan::Alloc<> > >; bool FreeTop = false; bool FreeLeft = false; bool FreeRight = false; bool FreeBottom = false; TACSpec = seqan::Tag; TScore = int]': /build/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_dynamic_gap.h:194:9: required from 'void testDynamicGapInterfaces(TAlign&, const TAlgorithm&, const TAlignConfig&, int, int) [with TAlign = seqan::Align, seqan::Alloc<> > >; TAlgorithm = seqan::Tag; TAlignConfig = seqan::AlignConfig<>]' @@ -35794,6 +36556,36 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:61, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(seqan::ModifiedIterator&) [with THost = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; TSpec = seqan::Tag; typename seqan::Container >::Type = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:397:81: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix >, seqan::Tag >; TSeqHValue = char; TSeqVValue = char; TSeqVIterator = seqan::ModifiedIterator >, seqan::InfixSegment>, seqan::AdaptorIterator > >, seqan::Tag >; TScoringScheme = seqan::Score >; TDPCell = seqan::DPCell_ >; TColumnDescriptor = seqan::MetaColumnDescriptor, seqan::Tag >; TDPProfile = seqan::DPProfile_, seqan::Tag, seqan::TracebackOn<>, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:891:38: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix >, seqan::Tag >; TSequenceH = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSequenceV = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::AlignExtend_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; seqan::NavigateColumnWiseBanded = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSequenceV = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::AlignExtend_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSequenceV = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::AlignExtend_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn<>; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:157:33: required from 'TScoreValue seqan::_setUpAndRunAlignImpl(TAliExtContext_&, const TString0&, const TString1&, const seqan::Score&, int, int, TScoreValue, const TTracebackConfig&, const seqan::True&, const seqan::False&) [with TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >; TString0 = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TString1 = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:297:42: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 278 | TContainer cont(container(host(me))); + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 117 | ModifiedString(typename Parameter_::Type host) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:189, from /build/seqan2-2.4.0+dfsg/tests/align/test_align_stream.h:40, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:38: @@ -35852,6 +36644,7 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ +[ 6%] Linking CXX executable ../../bin/test_align_simd_local_equal_length In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:189, from /build/seqan2-2.4.0+dfsg/tests/align/test_align_stream.h:40, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:38: @@ -35881,6 +36674,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_equal_length.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o -o ../../bin/test_align_simd_local_equal_length -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:190, from /build/seqan2-2.4.0+dfsg/tests/align/test_align_stream.h:40, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:38: @@ -35980,47 +36775,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' - 2048 | (_arg1), # _arg1, \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, - from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:42, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, - from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:42, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:183, from /build/seqan2-2.4.0+dfsg/tests/align/test_align_stream.h:40, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:38: @@ -36281,6 +37035,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 6%] Built target test_align_simd_local_equal_length +make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/depend.internal". +Scanning dependencies of target test_align_parallel_interface +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 6%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_interface.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/tests/align/test_align_stream.h:40, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:38: @@ -36356,6 +37123,66 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps<> >, seqan::GapsIterator > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps<> >; TGapAnchors_ = seqan::String >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment >, seqan::InfixSegment>; TTagSpec = seqan::Rooted_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::InfixSegment>, seqan::AdaptorIterator > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix >, seqan::Tag >; TSequenceH = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSequenceV = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::AlignExtend_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSequenceV = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::AlignExtend_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:297:42: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 478 | return TIterator(me, end(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:503:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment >, seqan::InfixSegment>; TTagSpec = seqan::Rooted_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::InfixSegment>, seqan::AdaptorIterator > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix >, seqan::Tag >; TSequenceH = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSequenceV = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::AlignExtend_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSequenceV = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::AlignExtend_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:297:42: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 343 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:189, from /build/seqan2-2.4.0+dfsg/tests/align/test_align_stream.h:40, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:38: @@ -36528,30 +37355,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h: In instantiation of 'void SEQAN_TEST_test_align_extend_semiglobal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:49:5: required from here -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:558:16: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 558 | TAlign align(alignOrig); - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:41, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:586:16: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 586 | TAlign align(alignOrig); - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:41, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:35: @@ -36577,10 +37380,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:620:16: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 620 | TAlign align(alignOrig); - | ^~~~~ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:215:22: required from 'TScoreValue seqan::_smithWatermanGetMatrix(seqan::LocalAlignmentFinder&, const TStringH&, const TStringV&, const seqan::Score&, TScoreValue) [with TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TStringH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TStringV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /build/seqan2-2.4.0+dfsg/include/seqan/align/local_alignment_waterman_eggert_impl.h:703:46: required from 'TScoreValue seqan::_smithWaterman(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentFinder&, const seqan::Score&, TScoreValue) [with TSourceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSourceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>]' @@ -36597,13 +37396,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:41, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:190, from /build/seqan2-2.4.0+dfsg/tests/align/test_align_stream.h:40, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:38: @@ -36688,688 +37480,21 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' 105 | Iter(Iter const & other_) : | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 294 | ModifiedString const r_inf0(inf0); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 295 | ModifiedString const r_inf1(inf1); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 294 | ModifiedString const r_inf0(inf0); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 295 | ModifiedString const r_inf1(inf1); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::Segment >, seqan::InfixSegment>; TString1 = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:504:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:178:36: required from 'void SEQAN_TEST_test_align_extend_simple_infixes_recomp() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:45:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 294 | ModifiedString const r_inf0(inf0); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 295 | ModifiedString const r_inf1(inf1); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::Segment >, seqan::InfixSegment>; TString1 = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:504:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::Segment >, seqan::InfixSegment>; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:178:36: required from 'void SEQAN_TEST_test_align_extend_simple_infixes_recomp() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:45:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 294 | ModifiedString const r_inf0(inf0); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 295 | ModifiedString const r_inf1(inf1); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 294 | ModifiedString const r_inf0(inf0); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 295 | ModifiedString const r_inf1(inf1); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 294 | ModifiedString const r_inf0(inf0); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 295 | ModifiedString const r_inf1(inf1); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:569:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const TScoreValue&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:415:24: required from 'void SEQAN_TEST_test_align_extend_xdrop() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:47:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 294 | ModifiedString const r_inf0(inf0); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 295 | ModifiedString const r_inf1(inf1); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:569:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const TScoreValue&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:415:24: required from 'void SEQAN_TEST_test_align_extend_xdrop() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:47:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 294 | ModifiedString const r_inf0(inf0); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 295 | ModifiedString const r_inf1(inf1); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:603:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:514:24: required from 'void SEQAN_TEST_test_align_extend_xdrop_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:48:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 294 | ModifiedString const r_inf0(inf0); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 295 | ModifiedString const r_inf1(inf1); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h: In instantiation of 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::True; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:434:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:603:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:514:24: required from 'void SEQAN_TEST_test_align_extend_xdrop_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:48:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 294 | ModifiedString const r_inf0(inf0); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:46, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:43, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:295:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 295 | ModifiedString const r_inf1(inf1); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:118:25: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:294:49: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = const seqan::Segment >, seqan::InfixSegment>&]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment >, seqan::InfixSegment>; TValue2 = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Segment >, seqan::InfixSegment>; typename seqan::Reference > >::Type = seqan::Segment >, seqan::InfixSegment>&]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:427:10: required from 'void seqan::assignSource(seqan::Gaps >&, const TSequence2&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TSequence2 = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:59:21: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_equal_length.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource1 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource2 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Owner<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::Tag >, seqan::Owner<> >&; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:91:36: required from 'void SimdAlignTestCommon__Dynamic_Score_Matrix_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:80:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_equal_length.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_equal_length.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource1 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource2 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Owner<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::Tag >, seqan::Owner<> >&; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:74:30: required from 'void SimdAlignTestCommon__Affine_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:68:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_equal_length.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' - 104 | Align & operator=(Align const & other) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:554:20: required from 'void SEQAN_TEST_test_align_extend_semiglobal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:49:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:554:20: required from 'void SEQAN_TEST_test_align_extend_semiglobal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:49:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 647 | return Iter >(container(left), hostIterator(left) - right); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:554:20: required from 'void SEQAN_TEST_test_align_extend_semiglobal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:49:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = true; bool LEFT = false; bool RIGHT = false; bool BOTTOM = true; TACSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:554:20: required from 'void SEQAN_TEST_test_align_extend_semiglobal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:49:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 486 | return TIterator(me, end(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, int) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::AlignExtend_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; seqan::NavigateColumnWiseBanded = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::AlignExtend_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::AlignExtend_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn<>; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:157:33: required from 'TScoreValue seqan::_setUpAndRunAlignImpl(TAliExtContext_&, const TString0&, const TString1&, const seqan::Score&, int, int, TScoreValue, const TTracebackConfig&, const seqan::True&, const seqan::False&) [with TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >; TString0 = seqan::Segment >, seqan::InfixSegment>; TString1 = seqan::Segment >, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:351:43: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:586:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 586 | return Iter >(container(left), hostIterator(left) + right); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; TIntegral = long int]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:634:69: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::AlignExtend_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; seqan::NavigateColumnWiseBanded = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::AlignExtend_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::AlignExtend_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn<>; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:157:33: required from 'TScoreValue seqan::_setUpAndRunAlignImpl(TAliExtContext_&, const TString0&, const TString1&, const seqan::Score&, int, int, TScoreValue, const TTracebackConfig&, const seqan::True&, const seqan::False&) [with TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >; TString0 = seqan::Segment >, seqan::InfixSegment>; TString1 = seqan::Segment >, seqan::InfixSegment>; TScoreValue = int; TScoreSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:351:43: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 577 | return Iter >(container(left), hostIterator(left) + right); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:525:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:258:44: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global.h:2654:36: required from 'void SEQAN_TEST_test_alignment_algorithms_global_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:480:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:525:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:258:44: required from 'TScoreValue seqan::globalAlignment(seqan::Gaps&, seqan::Gaps&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align/test_alignment_algorithms_global.h:2654:36: required from 'void SEQAN_TEST_test_alignment_algorithms_global_different_container() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:480:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:36: @@ -37655,36 +37780,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:61, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(seqan::ModifiedIterator&) [with THost = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; TSpec = seqan::Tag; typename seqan::Container >::Type = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:397:81: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix >, seqan::Tag >; TSeqHValue = char; TSeqVValue = char; TSeqVIterator = seqan::ModifiedIterator >, seqan::InfixSegment>, seqan::AdaptorIterator > >, seqan::Tag >; TScoringScheme = seqan::Score >; TDPCell = seqan::DPCell_ >; TColumnDescriptor = seqan::MetaColumnDescriptor, seqan::Tag >; TDPProfile = seqan::DPProfile_, seqan::Tag, seqan::TracebackOn<>, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:891:38: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix >, seqan::Tag >; TSequenceH = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSequenceV = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::AlignExtend_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; seqan::NavigateColumnWiseBanded = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSequenceV = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::AlignExtend_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSequenceV = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::AlignExtend_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn<>; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:157:33: required from 'TScoreValue seqan::_setUpAndRunAlignImpl(TAliExtContext_&, const TString0&, const TString1&, const seqan::Score&, int, int, TScoreValue, const TTracebackConfig&, const seqan::True&, const seqan::False&) [with TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >; TString0 = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TString1 = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:297:42: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::True; TBoolXDrop = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:536:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:287:24: required from 'void SEQAN_TEST_test_align_extend_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_iterator.h:278:16: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 278 | TContainer cont(container(host(me))); - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 117 | ModifiedString(typename Parameter_::Type host) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWiseBanded = seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' @@ -37759,66 +37854,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:458:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment >, seqan::InfixSegment>; TTagSpec = seqan::Rooted_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::InfixSegment>, seqan::AdaptorIterator > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix >, seqan::Tag >; TSequenceH = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSequenceV = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::AlignExtend_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSequenceV = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::AlignExtend_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:297:42: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 478 | return TIterator(me, end(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_reverse.h:503:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const seqan::ModifiedString >&, seqan::Tag) [with THost = seqan::Segment >, seqan::InfixSegment>; TTagSpec = seqan::Rooted_; typename seqan::Iterator >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::InfixSegment>, seqan::AdaptorIterator > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix >, seqan::Tag >; TSequenceH = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSequenceV = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::AlignExtend_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSequenceV = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::AlignExtend_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:297:42: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Gaps&, seqan::Gaps&, const TScoreValue&, const TString0&, const TString1&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TSource0 = seqan::Segment >, seqan::InfixSegment>; TSource1 = seqan::Segment >, seqan::InfixSegment>; TGapsSpec0 = seqan::Tag; TGapsSpec1 = seqan::Tag; TString0 = seqan::String >; TString1 = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:395:32: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&, TAliExtContext_&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False; TAliExtContext_ = seqan::AliExtContext_ >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps >, seqan::InfixSegment>, seqan::Tag >, seqan::DPContext >, unsigned char, seqan::String >, seqan::Alloc<> >, seqan::String > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:424:36: required from 'TScoreValue seqan::_extendAlignmentImpl(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, int, int, const TScoreValue&, const seqan::Score&, const TBoolBanded&, const TBoolXDrop&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag; TBoolBanded = seqan::False; TBoolXDrop = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/align_extend/align_extend.h:519:32: required from 'TScoreValue seqan::extendAlignment(seqan::Align&, const TScoreValue&, const TString&, const TString&, const seqan::Tuple&, const seqan::ExtensionDirection&, const seqan::Score&) [with TStringInfix = seqan::Segment >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TString = seqan::String >; TPos = unsigned int; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.h:65:32: required from 'void SEQAN_TEST_test_align_extend_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:44:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 343 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/align_extend/test_align_extend.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/tests/align/test_align.cpp:36: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::PrefixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': @@ -37933,6 +37968,56 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_equal_length.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource1 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource2 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Owner<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::Tag >, seqan::Owner<> >&; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::ScoreSpecSelectable>; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:91:36: required from 'void SimdAlignTestCommon__Dynamic_Score_Matrix_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:80:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_equal_length.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_equal_length.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource1 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*; TSource2 = seqan::Align, seqan::Alloc<> >, seqan::Tag >*]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_base.h:1301:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::Align, seqan::Alloc<> >, seqan::Tag >; TSpec = seqan::Owner<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1149:18: required from 'typename seqan::Size::Type seqan::resize(T&&, TSize) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::Tag >, seqan::Owner<> >&; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:166:11: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, int, int) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:216:33: required from 'void testAlignSimd(const TFunctor&, const seqan::Score&, const TAlignConfig&, const TSimdLength&, const TBandFlag&) [with TAlphabet = seqan::SimpleType; TFunctor = impl::test_align_simd::GlobalAlignTester_; TScoreValue = int; TScoreSpec = seqan::Tag; TAlignConfig = seqan::AlignConfig; TSimdLength = seqan::Tag; TBandFlag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:74:30: required from 'void SimdAlignTestCommon__Affine_Align::runTest() [with SEQAN_TParam = std::tuple >, seqan::Tag, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global.h:68:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:97, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_base.h:41, + from /build/seqan2-2.4.0+dfsg/tests/align/test_align_simd_global_equal_length.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' + 104 | Align & operator=(Align const & other) + | ^~~~~~~~ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:993:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:612:32: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWiseBanded = seqan::Tag]' @@ -38099,22 +38184,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ -[ 6%] Linking CXX executable ../../bin/test_align_simd_local_equal_length -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_local_equal_length.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_local_equal_length.dir/test_align_simd_local_equal_length.cpp.o -o ../../bin/test_align_simd_local_equal_length -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 6%] Built target test_align_simd_local_equal_length -make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/depend.internal". -Scanning dependencies of target test_align_parallel_interface -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 6%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_interface.cpp [ 6%] Linking CXX executable ../../bin/test_align_extend cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_extend && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_extend.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_extend.dir/test_align_extend.cpp.o -o ../../bin/test_align_extend -lrt -lz -lbz2 @@ -38131,6 +38200,22 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 6%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/test_align_parallel_algorithm.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_parallel_algorithm.dir/test_align_parallel_algorithm.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_algorithm.cpp +[ 6%] Linking CXX executable ../../bin/test_align_parallel_interface +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_interface.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o -o ../../bin/test_align_parallel_interface -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 6%] Built target test_align_parallel_interface +make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/depend.internal". +Scanning dependencies of target test_align_parallel_data_structures +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 6%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_data_structures.cpp In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:156, @@ -38187,27 +38272,11 @@ /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 /usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 -[ 6%] Linking CXX executable ../../bin/test_align_parallel_algorithm -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_algorithm.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_algorithm.dir/test_align_parallel_algorithm.cpp.o -o ../../bin/test_align_parallel_algorithm -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 6%] Built target test_align_parallel_algorithm -make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/depend.internal". -Scanning dependencies of target test_align_parallel_data_structures -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 6%] Building CXX object tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/align_parallel/test_align_parallel_data_structures.cpp -[ 6%] Linking CXX executable ../../bin/test_align_parallel_interface -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_interface.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_interface.dir/test_align_parallel_interface.cpp.o -o ../../bin/test_align_parallel_interface -lrt -lz -lbz2 +[ 7%] Linking CXX executable ../../bin/test_align_parallel_data_structures +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_data_structures.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o -o ../../bin/test_align_parallel_data_structures -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 6%] Built target test_align_parallel_interface +[ 7%] Built target test_align_parallel_data_structures make -f tests/align_profile/CMakeFiles/test_align_profile.dir/build.make tests/align_profile/CMakeFiles/test_align_profile.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_profile /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_profile /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_profile/CMakeFiles/test_align_profile.dir/DependInfo.cmake --color= @@ -38217,13 +38286,13 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/align_profile/CMakeFiles/test_align_profile.dir/build.make tests/align_profile/CMakeFiles/test_align_profile.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 6%] Building CXX object tests/align_profile/CMakeFiles/test_align_profile.dir/test_align_profile.cpp.o +[ 7%] Building CXX object tests/align_profile/CMakeFiles/test_align_profile.dir/test_align_profile.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_profile && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_align_profile.dir/test_align_profile.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/align_profile/test_align_profile.cpp -[ 7%] Linking CXX executable ../../bin/test_align_parallel_data_structures -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_data_structures.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_data_structures.dir/test_align_parallel_data_structures.cpp.o -o ../../bin/test_align_parallel_data_structures -lrt -lz -lbz2 +[ 7%] Linking CXX executable ../../bin/test_align_parallel_algorithm +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_parallel_algorithm.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_parallel_algorithm.dir/test_align_parallel_algorithm.cpp.o -o ../../bin/test_align_parallel_algorithm -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Built target test_align_parallel_data_structures +[ 7%] Built target test_align_parallel_algorithm make -f tests/align_split/CMakeFiles/test_align_split.dir/build.make tests/align_split/CMakeFiles/test_align_split.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_split /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_split /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_split/CMakeFiles/test_align_split.dir/DependInfo.cmake --color= @@ -38464,11 +38533,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 7%] Building CXX object tests/arg_parse/CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/arg_parse && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/arg_parse/test_arg_parse.cpp -[ 7%] Linking CXX executable ../../bin/yara_indexer -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara && /usr/bin/cmake -E cmake_link_script CMakeFiles/yara_indexer.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/yara_indexer.dir/indexer.cpp.o -o ../../bin/yara_indexer -lrt -lz -lbz2 +[ 7%] Linking CXX executable ../../bin/test_arg_parse_version_check +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/arg_parse && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_arg_parse_version_check.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_arg_parse_version_check.dir/test_arg_parse_version_check.cpp.o -o ../../bin/test_arg_parse_version_check -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Built target yara_indexer +[ 7%] Built target test_arg_parse_version_check make -f tests/bam_io/CMakeFiles/test_bam_io.dir/build.make tests/bam_io/CMakeFiles/test_bam_io.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/bam_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bam_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bam_io/CMakeFiles/test_bam_io.dir/DependInfo.cmake --color= @@ -38480,6 +38549,68 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 7%] Building CXX object tests/bam_io/CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bam_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_io.cpp +[ 7%] Linking CXX executable ../../bin/yara_indexer +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara && /usr/bin/cmake -E cmake_link_script CMakeFiles/yara_indexer.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/yara_indexer.dir/indexer.cpp.o -o ../../bin/yara_indexer -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 7%] Built target yara_indexer +make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_exception.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_exception.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_exception.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_exception.dir/depend.internal". +Scanning dependencies of target test_basic_exception +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 7%] Building CXX object tests/basic/CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_exception.cpp +[ 7%] Linking CXX executable ../../bin/test_basic_exception +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_exception.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o -o ../../bin/test_basic_exception -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 7%] Built target test_basic_exception +make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/depend.internal". +Scanning dependencies of target test_basic_metaprogramming +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 7%] Building CXX object tests/basic/CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_metaprogramming.cpp +[ 7%] Linking CXX executable ../../bin/test_align_simd_global_variable_length +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_variable_length.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o -o ../../bin/test_align_simd_global_variable_length -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 7%] Built target test_align_simd_global_variable_length +make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/depend.internal". +Scanning dependencies of target test_basic_math +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 7%] Building CXX object tests/basic/CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_math.cpp +[ 7%] Linking CXX executable ../../bin/test_basic_metaprogramming +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_metaprogramming.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o -o ../../bin/test_basic_metaprogramming -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 7%] Built target test_basic_metaprogramming +make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/depend.internal". +Scanning dependencies of target test_basic_fundamental +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_io.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': @@ -38502,6 +38633,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 7%] Building CXX object tests/basic/CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_fundamental.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/tests/bam_io/test_bam_io.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': @@ -38606,70 +38739,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 7%] Linking CXX executable ../../bin/test_align_simd_global_variable_length -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_variable_length.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_variable_length.dir/test_align_simd_global_variable_length.cpp.o -o ../../bin/test_align_simd_global_variable_length -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Built target test_align_simd_global_variable_length -make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_exception.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_exception.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_exception.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_exception.dir/depend.internal". -Scanning dependencies of target test_basic_exception -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Building CXX object tests/basic/CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_exception.cpp -[ 7%] Linking CXX executable ../../bin/test_basic_exception -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_exception.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o -o ../../bin/test_basic_exception -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Built target test_basic_exception -make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/depend.internal". -Scanning dependencies of target test_basic_metaprogramming -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Building CXX object tests/basic/CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_metaprogramming.cpp -[ 7%] Linking CXX executable ../../bin/test_arg_parse_version_check -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/arg_parse && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_arg_parse_version_check.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_arg_parse_version_check.dir/test_arg_parse_version_check.cpp.o -o ../../bin/test_arg_parse_version_check -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Built target test_arg_parse_version_check -make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/depend.internal". -Scanning dependencies of target test_basic_math -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Building CXX object tests/basic/CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_math.cpp -[ 7%] Linking CXX executable ../../bin/test_basic_metaprogramming -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_metaprogramming.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o -o ../../bin/test_basic_metaprogramming -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Built target test_basic_metaprogramming -make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/depend.internal". -Scanning dependencies of target test_basic_fundamental -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Building CXX object tests/basic/CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_fundamental.cpp [ 7%] Linking CXX executable ../../bin/test_basic_math cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_math.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o -o ../../bin/test_basic_math -lrt -lz -lbz2 @@ -38686,9 +38755,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 7%] Building CXX object tests/basic/CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_concept.cpp -[ 7%] Linking CXX executable ../../bin/test_align_simd_global_equal_length -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_equal_length.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o -o ../../bin/test_align_simd_global_equal_length -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_concept.h:65, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:68, from /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_concept.cpp:37: @@ -38730,8 +38796,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +[ 7%] Linking CXX executable ../../bin/test_basic_concept +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_concept.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o -o ../../bin/test_basic_concept -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Built target test_align_simd_global_equal_length +[ 7%] Built target test_basic_concept make -f tests/basic/CMakeFiles/test_basic_container.dir/build.make tests/basic/CMakeFiles/test_basic_container.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_container.dir/DependInfo.cmake --color= @@ -38743,11 +38812,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 7%] Building CXX object tests/basic/CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_container.cpp -[ 7%] Linking CXX executable ../../bin/test_basic_concept -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_concept.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o -o ../../bin/test_basic_concept -lrt -lz -lbz2 +[ 8%] Linking CXX executable ../../bin/test_basic_fundamental +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_fundamental.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o -o ../../bin/test_basic_fundamental -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Built target test_basic_concept +[ 8%] Built target test_basic_fundamental make -f tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make tests/basic/CMakeFiles/test_basic_aggregate.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_aggregate.dir/DependInfo.cmake --color= @@ -38757,13 +38826,13 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make tests/basic/CMakeFiles/test_basic_aggregate.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Building CXX object tests/basic/CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o +[ 8%] Building CXX object tests/basic/CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_aggregate.cpp -[ 7%] Linking CXX executable ../../bin/test_basic_container +[ 8%] Linking CXX executable ../../bin/test_basic_container cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_container.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o -o ../../bin/test_basic_container -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Built target test_basic_container +[ 8%] Built target test_basic_container make -f tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make tests/basic/CMakeFiles/test_basic_alphabet.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_alphabet.dir/DependInfo.cmake --color= @@ -38773,24 +38842,8 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make tests/basic/CMakeFiles/test_basic_alphabet.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Building CXX object tests/basic/CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o +[ 8%] Building CXX object tests/basic/CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_alphabet.cpp -[ 8%] Linking CXX executable ../../bin/test_basic_fundamental -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_fundamental.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o -o ../../bin/test_basic_fundamental -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 8%] Built target test_basic_fundamental -make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/depend.internal". -Scanning dependencies of target test_basic_allocator -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 8%] Building CXX object tests/basic/CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_allocator.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:46, from /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_aggregate.cpp:38: @@ -38805,11 +38858,30 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = int; T2 = int; T3 = int]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 8%] Linking CXX executable ../../bin/test_basic_allocator -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_allocator.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o -o ../../bin/test_basic_allocator -lrt -lz -lbz2 +[ 8%] Linking CXX executable ../../bin/test_basic_alphabet +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_alphabet.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o -o ../../bin/test_basic_alphabet -lrt -lz -lbz2 +[ 8%] Linking CXX executable ../../bin/test_arg_parse +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/arg_parse && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_arg_parse.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o -o ../../bin/test_arg_parse -lrt -lz -lbz2 +[ 8%] Linking CXX executable ../../bin/test_align_simd_global_equal_length +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align_simd_global_equal_length.dir/link.txt --verbose=1 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align_simd_global_equal_length.dir/test_align_simd_global_equal_length.cpp.o -o ../../bin/test_align_simd_global_equal_length -lrt -lz -lbz2 +[ 8%] Built target test_basic_alphabet +make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/depend.internal". +Scanning dependencies of target test_basic_allocator +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 8%] Building CXX object tests/basic/CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_allocator.cpp make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 8%] Built target test_basic_allocator +[ 8%] Built target test_arg_parse make -f tests/basic/CMakeFiles/test_basic_parallelism.dir/build.make tests/basic/CMakeFiles/test_basic_parallelism.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_parallelism.dir/DependInfo.cmake --color= @@ -38821,17 +38893,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 8%] Building CXX object tests/basic/CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_parallelism.cpp -[ 8%] Linking CXX executable ../../bin/test_basic_parallelism -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_parallelism.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o -o ../../bin/test_basic_parallelism -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 8%] Linking CXX executable ../../bin/test_basic_alphabet -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_alphabet.dir/link.txt --verbose=1 -[ 8%] Built target test_basic_parallelism +[ 8%] Built target test_align_simd_global_equal_length make -f tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make tests/basic/CMakeFiles/test_basic_smart_pointer.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/DependInfo.cmake --color= -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o -o ../../bin/test_basic_alphabet -lrt -lz -lbz2 Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/depend.internal". Scanning dependencies of target test_basic_smart_pointer @@ -38840,8 +38906,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 9%] Building CXX object tests/basic/CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_smart_pointer.cpp +[ 9%] Linking CXX executable ../../bin/test_basic_parallelism +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_parallelism.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o -o ../../bin/test_basic_parallelism -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 9%] Built target test_basic_alphabet +[ 9%] Built target test_basic_parallelism make -f tests/basic/CMakeFiles/test_basic_proxy.dir/build.make tests/basic/CMakeFiles/test_basic_proxy.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_proxy.dir/DependInfo.cmake --color= @@ -38863,60 +38932,15 @@ cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_iterator.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_iterator.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_iterator.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_iterator.dir/depend.internal". -[ 10%] Linking CXX executable ../../bin/test_basic_proxy -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_proxy.dir/link.txt --verbose=1 Scanning dependencies of target test_basic_iterator -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_proxy.dir/test_basic_proxy.cpp.o -o ../../bin/test_basic_proxy -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_iterator.dir/build.make tests/basic/CMakeFiles/test_basic_iterator.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 10%] Building CXX object tests/basic/CMakeFiles/test_basic_iterator.dir/test_basic_iterator.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_iterator.dir/test_basic_iterator.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_iterator.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 10%] Built target test_basic_proxy -make -f tests/bed_io/CMakeFiles/test_bed_io.dir/build.make tests/bed_io/CMakeFiles/test_bed_io.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/bed_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/depend.internal". -Scanning dependencies of target test_bed_io -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/bed_io/CMakeFiles/test_bed_io.dir/build.make tests/bed_io/CMakeFiles/test_bed_io.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 10%] Building CXX object tests/bed_io/CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/bed_io/test_bed_io.cpp -[ 10%] Linking CXX executable ../../bin/test_arg_parse -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/arg_parse && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_arg_parse.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o -o ../../bin/test_arg_parse -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 10%] Built target test_arg_parse -make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/blast /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast/CMakeFiles/test_blast.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast/CMakeFiles/test_blast.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast/CMakeFiles/test_blast.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast/CMakeFiles/test_blast.dir/depend.internal". -Scanning dependencies of target test_blast -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 10%] Building CXX object tests/blast/CMakeFiles/test_blast.dir/test_blast.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_blast.dir/test_blast.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp -[ 10%] Linking CXX executable ../../bin/test_basic_smart_pointer -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_smart_pointer.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o -o ../../bin/test_basic_smart_pointer -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 10%] Built target test_basic_smart_pointer -make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/consensus /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/depend.internal". -Scanning dependencies of target test_consensus -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 10%] Building CXX object tests/consensus/CMakeFiles/test_consensus.dir/test_consensus.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_consensus.dir/test_consensus.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp +[ 10%] Linking CXX executable ../../bin/test_basic_proxy +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_proxy.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_proxy.dir/test_basic_proxy.cpp.o -o ../../bin/test_basic_proxy -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_iterator.cpp:40: /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_iterator.h: In instantiation of 'void SEQAN_TEST_test_basic_iterator_position_arithmetics() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_iterator.cpp:71:5: required from here @@ -38939,6 +38963,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = int*]' 105 | Iter(Iter const & other_) : | ^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 10%] Built target test_basic_proxy +make -f tests/bed_io/CMakeFiles/test_bed_io.dir/build.make tests/bed_io/CMakeFiles/test_bed_io.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/bed_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/tests/basic/test_basic_iterator.cpp:38: @@ -38954,6 +38983,46 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = int*]' 105 | Iter(Iter const & other_) : | ^~~~ +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/depend.internal". +Scanning dependencies of target test_bed_io +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/bed_io/CMakeFiles/test_bed_io.dir/build.make tests/bed_io/CMakeFiles/test_bed_io.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 10%] Linking CXX executable ../../bin/test_basic_smart_pointer +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_smart_pointer.dir/link.txt --verbose=1 +[ 10%] Building CXX object tests/bed_io/CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/bed_io/test_bed_io.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o -o ../../bin/test_basic_smart_pointer -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 10%] Built target test_basic_smart_pointer +make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/blast /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast/CMakeFiles/test_blast.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast/CMakeFiles/test_blast.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast/CMakeFiles/test_blast.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast/CMakeFiles/test_blast.dir/depend.internal". +Scanning dependencies of target test_blast +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 10%] Building CXX object tests/blast/CMakeFiles/test_blast.dir/test_blast.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_blast.dir/test_blast.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp +[ 10%] Linking CXX executable ../../bin/test_basic_allocator +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_allocator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o -o ../../bin/test_basic_allocator -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 10%] Built target test_basic_allocator +make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/consensus /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/depend.internal". +Scanning dependencies of target test_consensus +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 10%] Building CXX object tests/consensus/CMakeFiles/test_consensus.dir/test_consensus.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_consensus.dir/test_consensus.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, from /build/seqan2-2.4.0+dfsg/tests/bed_io/test_bed_io.cpp:39: @@ -39039,6 +39108,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 10%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/razers3/param_tabs.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/tests/blast/test_blast.cpp:41: @@ -39305,6 +39376,48 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +[ 10%] Linking CXX executable ../../bin/razers3 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../bin/razers3 -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' + 2048 | (_arg1), # _arg1, \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, + from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, + from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.h:39, from /build/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:35: @@ -39332,6 +39445,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 10%] Built target razers3 +make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/find /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find/CMakeFiles/test_find.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find/CMakeFiles/test_find.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find/CMakeFiles/test_find.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find/CMakeFiles/test_find.dir/depend.internal". +Scanning dependencies of target test_find +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 11%] Building CXX object tests/find/CMakeFiles/test_find.dir/test_find.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_find.dir/test_find.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:47, from /build/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.h:40, @@ -39722,45 +39848,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' - 2048 | (_arg1), # _arg1, \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, - from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, - from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -39930,9 +40017,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 10%] Linking CXX executable ../../bin/razers3 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../bin/razers3 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/tests/consensus/test_consensus.cpp:33: @@ -39992,19 +40076,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 10%] Built target razers3 -make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/find /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find/CMakeFiles/test_find.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find/CMakeFiles/test_find.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find/CMakeFiles/test_find.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find/CMakeFiles/test_find.dir/depend.internal". -Scanning dependencies of target test_find -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 11%] Building CXX object tests/find/CMakeFiles/test_find.dir/test_find.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_find.dir/test_find.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:42, @@ -40307,9 +40378,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 11%] Linking CXX executable ../../bin/test_bed_io -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bed_io.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o -o ../../bin/test_bed_io -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:39: @@ -40394,19 +40462,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 11%] Built target test_bed_io -make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/gff_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/depend.internal". -Scanning dependencies of target test_gff_io -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 11%] Building CXX object tests/gff_io/CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/gff_io/test_gff_io.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:40: @@ -40727,9 +40782,87 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 11%] Linking CXX executable ../../bin/test_bam_io -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bam_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bam_io.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o -o ../../bin/test_bam_io -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:305:34: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:425:15: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder > >; TNeedle = seqan::String >; TMultiFinder = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:305:34: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:425:15: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> > >; TNeedle = seqan::String, seqan::Alloc<> >; TMultiFinder = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; TIntegral = long unsigned int]': +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_multiple_bfam.h:331:53: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder > >; TAutomaton = seqan::Oracle; TNeedle = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:446:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder > >; TNeedle = seqan::String >; TMultiFinder = seqan::MultiBfam]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1354:62: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical_multi_bfam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1925:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 577 | return Iter >(container(left), hostIterator(left) + right); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = long unsigned int]': +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_multiple_bfam.h:331:53: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> > >; TAutomaton = seqan::Oracle; TNeedle = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:446:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> > >; TNeedle = seqan::String, seqan::Alloc<> >; TMultiFinder = seqan::MultiBfam]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1354:62: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical_multi_bfam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1925:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 577 | return Iter >(container(left), hostIterator(left) + right); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:40: @@ -40754,11 +40887,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 11%] Built target test_bam_io -make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_algorithms /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:40: @@ -40813,13 +40941,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/depend.internal". -Scanning dependencies of target test_graph_algorithms -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 12%] Building CXX object tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:47, from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:41: @@ -40847,7 +40968,92 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/graph_algorithms/test_graph_algorithms.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:425:15: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder > >; TNeedle = seqan::String >; TMultiFinder = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 343 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:55, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, void>; TNeedle = seqan::String >; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1625:16: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, void>; TNeedle = seqan::String >; TSpec = seqan::FindInfix; TFindBeginPatternSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:427:15: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder > >; TNeedle = seqan::String >; TMultiFinder = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 599 | return container(hostIterator(me)); + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:425:15: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> > >; TNeedle = seqan::String, seqan::Alloc<> >; TMultiFinder = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 343 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:55, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1625:16: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::FindInfix; TFindBeginPatternSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:427:15: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> > >; TNeedle = seqan::String, seqan::Alloc<> >; TMultiFinder = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 599 | return container(hostIterator(me)); + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:39: @@ -41021,6 +41227,26 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:66:53: required from 'void seqan::_addStringToTrie(seqan::Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = char; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeyword = seqan::Segment >, seqan::SuffixSegment>; TPos = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:196:25: required from 'void seqan::createSuffixTrie(seqan::Graph >&, TTerminalStateMap&, const TText&) [with TAlphabet = char; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TText = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_bom.h:161:21: required from 'void seqan::_reinitPattern(seqan::Pattern >&) [with TNeedle = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(seqan::Pattern&, TNeedle2&&) [with TNeedle = seqan::String >; TSpec = seqan::Bfam; TNeedle2 = seqan::String >&]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:102:12: required from 'void Test_OnlineAlg() [with TAlgorithmSpec = seqan::Bfam]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1255:32: required from 'void SEQAN_TEST_test_find_online_BFAM_Trie() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1905:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, + from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:40: @@ -41051,224 +41277,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWiseBanded = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(seqan::ConsensusBuilder_::TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; seqan::ConsensusBuilder_::TFragments = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(seqan::FragmentStore&, const seqan::ConsensusAlignmentOptions&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig]' -/build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 486 | return TIterator(me, end(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:305:34: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:425:15: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder > >; TNeedle = seqan::String >; TMultiFinder = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:305:34: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:425:15: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> > >; TNeedle = seqan::String, seqan::Alloc<> >; TMultiFinder = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; TIntegral = long unsigned int]': -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_multiple_bfam.h:331:53: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder > >; TAutomaton = seqan::Oracle; TNeedle = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:446:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder > >; TNeedle = seqan::String >; TMultiFinder = seqan::MultiBfam]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1354:62: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical_multi_bfam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1925:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 577 | return Iter >(container(left), hostIterator(left) + right); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, TIntegral) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; TIntegral = long unsigned int]': -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_multiple_bfam.h:331:53: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> > >; TAutomaton = seqan::Oracle; TNeedle = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:446:13: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> > >; TNeedle = seqan::String, seqan::Alloc<> >; TMultiFinder = seqan::MultiBfam]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1354:62: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical_multi_bfam() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1925:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:577:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 577 | return Iter >(container(left), hostIterator(left) + right); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:425:15: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder > >; TNeedle = seqan::String >; TMultiFinder = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 343 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:55, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, void>; TNeedle = seqan::String >; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1625:16: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder >, seqan::InfixSegment>, void>; TNeedle = seqan::String >; TSpec = seqan::FindInfix; TFindBeginPatternSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:427:15: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder > >; TNeedle = seqan::String >; TMultiFinder = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:923:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 599 | return container(hostIterator(me)); - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:301:30: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:425:15: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> > >; TNeedle = seqan::String, seqan::Alloc<> >; TMultiFinder = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 343 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:55, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(seqan::Finder&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1603:45: required from 'bool seqan::find(TFinder&, const seqan::Pattern >&, seqan::PatternState_ >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_myers_ukkonen.h:1625:16: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> >, seqan::InfixSegment>, void>; TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::FindInfix; TFindBeginPatternSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pex.h:427:15: required from 'bool seqan::find(TFinder&, seqan::Pattern >&) [with TFinder = seqan::Finder, seqan::Alloc<> > >; TNeedle = seqan::String, seqan::Alloc<> >; TMultiFinder = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:990:5: required from 'void Test_Approx_EditDist() [with TPatternSpec = seqan::Pex >]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1339:45: required from 'void SEQAN_TEST_test_approx_edit_dist_pex_non_hierarchical() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1921:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:599:38: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 599 | return container(hostIterator(me)); - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:53: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:66:53: required from 'void seqan::_addStringToTrie(seqan::Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = char; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeyword = seqan::Segment >, seqan::SuffixSegment>; TPos = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/graph_types/graph_impl_trie.h:196:25: required from 'void seqan::createSuffixTrie(seqan::Graph >&, TTerminalStateMap&, const TText&) [with TAlphabet = char; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TText = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_bom.h:161:21: required from 'void seqan::_reinitPattern(seqan::Pattern >&) [with TNeedle = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_pattern_base.h:255:19: required from 'void seqan::setHost(seqan::Pattern&, TNeedle2&&) [with TNeedle = seqan::String >; TSpec = seqan::Bfam; TNeedle2 = seqan::String >&]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:102:12: required from 'void Test_OnlineAlg() [with TAlgorithmSpec = seqan::Bfam]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1255:32: required from 'void SEQAN_TEST_test_find_online_BFAM_Trie() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:1905:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, - from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: @@ -41446,6 +41454,39 @@ 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:650:29: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWiseBanded = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_banded.h:99:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:138:38: required from 'void seqan::ConsensusBuilder_::computeOverlaps(seqan::ConsensusBuilder_::TFragments&, seqan::String&, seqan::Graph >&, const TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>; seqan::ConsensusBuilder_::TFragments = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_builder.h:370:5: required from 'void seqan::ConsensusBuilder_::run(TFragmentStore&, const std::vector&) const [with TFragmentStore = seqan::FragmentStore<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner.h:170:20: required from 'void seqan::ConsensusAligner_::run() [with TFragmentStore = seqan::FragmentStore<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:141:16: required from 'void seqan::consensusAlignment(seqan::FragmentStore&, const seqan::ConsensusAlignmentOptions&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig]' +/build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:78:23: required from 'void SEQAN_TEST_test_consensus_consensus_alignment_coordinates() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:298:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 486 | return TIterator(me, end(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/consensus_v2/test_consensus_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +[ 11%] Linking CXX executable ../../bin/test_bed_io +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bed_io.dir/link.txt --verbose=1 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::SuffixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': @@ -41472,6 +41513,7 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_bed_io.dir/test_bed_io.cpp.o -o ../../bin/test_bed_io -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:76, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:44, from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: @@ -41600,6 +41642,13 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 11%] Built target test_bed_io +make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/gff_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: @@ -41623,6 +41672,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ +Scanning dependencies of target test_gff_io +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 11%] Building CXX object tests/gff_io/CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/gff_io/test_gff_io.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:43, from /build/seqan2-2.4.0+dfsg/tests/find/test_find.cpp:54: @@ -41952,6 +42007,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 11%] Linking CXX executable ../../bin/test_bam_io +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bam_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bam_io.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o -o ../../bin/test_bam_io -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 11%] Built target test_bam_io +make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_algorithms /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/depend.internal". +Scanning dependencies of target test_graph_algorithms +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 12%] Building CXX object tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/graph_algorithms/test_graph_algorithms.cpp [ 12%] Linking CXX executable ../../bin/test_gff_io cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_gff_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o -o ../../bin/test_gff_io -lrt -lz -lbz2 @@ -42033,9 +42104,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ -[ 12%] Linking CXX executable ../../bin/test_graph_algorithms -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_algorithms.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o -o ../../bin/test_graph_algorithms -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -42067,19 +42135,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 12%] Built target test_graph_algorithms -make -f tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make tests/graph_msa/CMakeFiles/test_graph_msa.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_msa /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa/CMakeFiles/test_graph_msa.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa/CMakeFiles/test_graph_msa.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa/CMakeFiles/test_graph_msa.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa/CMakeFiles/test_graph_msa.dir/depend.internal". -Scanning dependencies of target test_graph_msa -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make tests/graph_msa/CMakeFiles/test_graph_msa.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 12%] Building CXX object tests/graph_msa/CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/graph_msa/test_graph_msa.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:189, from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:50, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io/bam_sam.h:39, @@ -42523,6 +42578,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +[ 12%] Linking CXX executable ../../bin/test_graph_algorithms +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_algorithms.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o -o ../../bin/test_graph_algorithms -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 12%] Built target test_graph_algorithms +make -f tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make tests/graph_msa/CMakeFiles/test_graph_msa.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_msa /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa/CMakeFiles/test_graph_msa.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa/CMakeFiles/test_graph_msa.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa/CMakeFiles/test_graph_msa.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa/CMakeFiles/test_graph_msa.dir/depend.internal". +Scanning dependencies of target test_graph_msa +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make tests/graph_msa/CMakeFiles/test_graph_msa.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 12%] Building CXX object tests/graph_msa/CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/graph_msa/test_graph_msa.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40, from /build/seqan2-2.4.0+dfsg/tests/graph_msa/test_graph_msa.cpp:47: @@ -42563,6 +42634,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ +[ 12%] Linking CXX executable ../../bin/test_consensus +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_consensus.dir/link.txt --verbose=1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:40, from /build/seqan2-2.4.0+dfsg/tests/graph_msa/test_graph_msa.cpp:47: @@ -42604,8 +42677,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ -[ 12%] Linking CXX executable ../../bin/test_consensus -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_consensus.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_consensus.dir/test_consensus.cpp.o -o ../../bin/test_consensus -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 12%] Built target test_consensus @@ -42668,6 +42739,22 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 13%] Building CXX object tests/graph_types/CMakeFiles/test_graph_types_derived.dir/test_graph_types_derived.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_types_derived.dir/test_graph_types_derived.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_derived.cpp +[ 13%] Linking CXX executable ../../bin/test_consensus_v2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus_v2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_consensus_v2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_consensus_v2.dir/test_consensus_v2.cpp.o -o ../../bin/test_consensus_v2 -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 13%] Built target test_consensus_v2 +make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/depend.internal". +Scanning dependencies of target test_graph_types_property_map +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 13%] Building CXX object tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_property_map.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_derived.cpp:33: @@ -42729,22 +42816,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = char*]' 129 | operator = (Segment const & source) | ^~~~~~~~ -[ 13%] Linking CXX executable ../../bin/test_consensus_v2 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus_v2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_consensus_v2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_consensus_v2.dir/test_consensus_v2.cpp.o -o ../../bin/test_consensus_v2 -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 13%] Built target test_consensus_v2 -make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/depend.internal". -Scanning dependencies of target test_graph_types_property_map -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 13%] Building CXX object tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/graph_types/test_graph_types_property_map.cpp [ 13%] Linking CXX executable ../../bin/test_graph_types_derived cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_derived.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_derived.dir/test_graph_types_derived.cpp.o -o ../../bin/test_graph_types_derived -lrt -lz -lbz2 @@ -42761,6 +42832,38 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 13%] Building CXX object tests/index/CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_swift.cpp +[ 13%] Linking CXX executable ../../bin/test_graph_types_property_map +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_property_map.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o -o ../../bin/test_graph_types_property_map -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 13%] Built target test_graph_types_property_map +make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/depend.internal". +Scanning dependencies of target test_find2_index_approx +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 13%] Building CXX object tests/index/CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp +[ 13%] Linking CXX executable ../../bin/test_graph_types_iterators +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_iterators.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_iterators.dir/test_graph_types_iterators.cpp.o -o ../../bin/test_graph_types_iterators -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 13%] Built target test_graph_types_iterators +make -f tests/index/CMakeFiles/test_find_backtracking.dir/build.make tests/index/CMakeFiles/test_find_backtracking.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find_backtracking.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find_backtracking.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find_backtracking.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find_backtracking.dir/depend.internal". +Scanning dependencies of target test_find_backtracking +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_find_backtracking.dir/build.make tests/index/CMakeFiles/test_find_backtracking.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 13%] Building CXX object tests/index/CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_swift.cpp:1: @@ -42796,38 +42899,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 13%] Linking CXX executable ../../bin/test_graph_types_property_map -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_property_map.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_property_map.dir/test_graph_types_property_map.cpp.o -o ../../bin/test_graph_types_property_map -lrt -lz -lbz2 -[ 13%] Linking CXX executable ../../bin/test_graph_types_iterators -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_iterators.dir/link.txt --verbose=1 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_iterators.dir/test_graph_types_iterators.cpp.o -o ../../bin/test_graph_types_iterators -lrt -lz -lbz2 -[ 13%] Built target test_graph_types_property_map -make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/depend.internal". -Scanning dependencies of target test_find2_index_approx -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 13%] Building CXX object tests/index/CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 13%] Built target test_graph_types_iterators -make -f tests/index/CMakeFiles/test_find_backtracking.dir/build.make tests/index/CMakeFiles/test_find_backtracking.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find_backtracking.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find_backtracking.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find_backtracking.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find_backtracking.dir/depend.internal". -Scanning dependencies of target test_find_backtracking -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_find_backtracking.dir/build.make tests/index/CMakeFiles/test_find_backtracking.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 13%] Building CXX object tests/index/CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_swift.cpp:1: @@ -42851,7 +42922,7 @@ | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:35: + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); @@ -42860,14 +42931,14 @@ 2048 | (_arg1), # _arg1, \ | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:38: + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:35: + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); | ^~~~~~ @@ -42875,8 +42946,8 @@ 2224 | (_arg1), # _arg1)) { \ | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:38: + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ @@ -42886,9 +42957,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +[ 13%] Linking CXX executable ../../bin/test_graph_types_types +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_types.dir/link.txt --verbose=1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: + from /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); @@ -42897,14 +42970,14 @@ 2048 | (_arg1), # _arg1, \ | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: + from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:38: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: + from /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); | ^~~~~~ @@ -42912,8 +42985,8 @@ 2224 | (_arg1), # _arg1)) { \ | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: + from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:38: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ @@ -42923,6 +42996,104 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_types.dir/test_graph_types_types.cpp.o -o ../../bin/test_graph_types_types -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:476:9: required from 'SEQAN_TEST_test_find2_index_approx_small_test:: [with auto:4 = seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > >, seqan::VSTree > >; seqan::DnaString = seqan::String, seqan::Alloc<> >; uint8_t = unsigned char]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:509:17: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const seqan::OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; TDir = seqan::Tag; TDistanceTag = seqan::Tag; uint32_t = unsigned int; uint8_t = unsigned char]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:556:25: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const seqan::OptimalSearch&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:571:29: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const std::array, N>&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; long unsigned int N = 3; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:592:25: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::String&, const TDistanceTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TChar = seqan::SimpleType; TStringSpec = seqan::Alloc<>; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:617:35: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::StringSet&, const TDistanceTag&, const TParallelTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TNeedle = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Owner<>; TDistanceTag = seqan::Tag; TParallelTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:481:15: required from 'void SEQAN_TEST_test_find2_index_approx_small_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:44:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 13%] Built target test_graph_types_types +make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/depend.internal". +Scanning dependencies of target test_index_view +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 13%] Building CXX object tests/index/CMakeFiles/test_index_view.dir/test_index_view.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_view.dir/test_index_view.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:476:9: required from 'SEQAN_TEST_test_find2_index_approx_small_test:: [with auto:4 = seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > >, seqan::VSTree > >; seqan::DnaString = seqan::String, seqan::Alloc<> >; uint8_t = unsigned char]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:509:17: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const seqan::OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; TDir = seqan::Tag; TDistanceTag = seqan::Tag; uint32_t = unsigned int; uint8_t = unsigned char]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:556:25: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const seqan::OptimalSearch&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:571:29: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const std::array, N>&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; long unsigned int N = 3; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:592:25: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::String&, const TDistanceTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TChar = seqan::SimpleType; TStringSpec = seqan::Alloc<>; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:617:35: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::StringSet&, const TDistanceTag&, const TParallelTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TNeedle = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Owner<>; TDistanceTag = seqan::Tag; TParallelTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:481:15: required from 'void SEQAN_TEST_test_find2_index_approx_small_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:44:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 343 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:497:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(T&) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:476:9: required from 'SEQAN_TEST_test_find2_index_approx_small_test:: [with auto:4 = seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > >, seqan::VSTree > >; seqan::DnaString = seqan::String, seqan::Alloc<> >; uint8_t = unsigned char]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:509:17: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const seqan::OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; TDir = seqan::Tag; TDistanceTag = seqan::Tag; uint32_t = unsigned int; uint8_t = unsigned char]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:556:25: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const seqan::OptimalSearch&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:571:29: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const std::array, N>&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; long unsigned int N = 3; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:592:25: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::String&, const TDistanceTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TChar = seqan::SimpleType; TStringSpec = seqan::Alloc<>; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:617:35: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::StringSet&, const TDistanceTag&, const TParallelTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TNeedle = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Owner<>; TDistanceTag = seqan::Tag; TParallelTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:481:15: required from 'void SEQAN_TEST_test_find2_index_approx_small_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:44:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 478 | return TIterator(me, end(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:38: @@ -42997,6 +43168,32 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:476:9: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:556:25: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const seqan::OptimalSearch&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:571:29: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const std::array, N>&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; long unsigned int N = 3; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:592:25: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::String&, const TDistanceTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TChar = seqan::SimpleType; TStringSpec = seqan::Alloc<>; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:617:35: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::StringSet&, const TDistanceTag&, const TParallelTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TNeedle = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Owner<>; TDistanceTag = seqan::Tag; TParallelTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:481:15: required from 'void SEQAN_TEST_test_find2_index_approx_small_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:44:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::String >; TIndexSpec = void; TSpec = seqan::Preorder]': /build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:377:17: required from 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::String >; TIndexSpec = void; TSpec = seqan::Preorder; TDfsOrder = seqan::Preorder_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' @@ -43027,164 +43224,412 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ -[ 13%] Linking CXX executable ../../bin/test_graph_types_types -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types_types.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_types_types.dir/test_graph_types_types.cpp.o -o ../../bin/test_graph_types_types -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = seqan::String > >; TObject = seqan::String, seqan::Alloc<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Alloc<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 311 | buffer[pool.handlerArgs(Val_)] = Val_; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 517 | *cb.cur = item; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 311 | buffer[pool.handlerArgs(Val_)] = Val_; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 517 | *cb.cur = item; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 202 | *refNext = *I; + | ~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 203 | *I = *refPrev; + | ~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 243 | *cur = *refPrev; + | ~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ [ 15%] Linking CXX executable ../../bin/test_index_swift cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_swift.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o -o ../../bin/test_index_swift -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 15%] Built target test_index_swift -make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/depend.internal". -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -Scanning dependencies of target test_index_view -[ 15%] Built target test_graph_types_types -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/build make -f tests/index/CMakeFiles/test_index_repeats.dir/build.make tests/index/CMakeFiles/test_index_repeats.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_repeats.dir/DependInfo.cmake --color= -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:476:9: required from 'SEQAN_TEST_test_find2_index_approx_small_test:: [with auto:4 = seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > >, seqan::VSTree > >; seqan::DnaString = seqan::String, seqan::Alloc<> >; uint8_t = unsigned char]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:509:17: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const seqan::OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; TDir = seqan::Tag; TDistanceTag = seqan::Tag; uint32_t = unsigned int; uint8_t = unsigned char]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:556:25: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const seqan::OptimalSearch&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:571:29: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const std::array, N>&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; long unsigned int N = 3; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:592:25: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::String&, const TDistanceTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TChar = seqan::SimpleType; TStringSpec = seqan::Alloc<>; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:617:35: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::StringSet&, const TDistanceTag&, const TParallelTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TNeedle = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Owner<>; TDistanceTag = seqan::Tag; TParallelTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:481:15: required from 'void SEQAN_TEST_test_find2_index_approx_small_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:44:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -[ 15%] Building CXX object tests/index/CMakeFiles/test_index_view.dir/test_index_view.cpp.o Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_repeats.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_repeats.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_repeats.dir/depend.internal". -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_view.dir/test_index_view.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp Scanning dependencies of target test_index_repeats make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/index/CMakeFiles/test_index_repeats.dir/build.make tests/index/CMakeFiles/test_index_repeats.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 15%] Building CXX object tests/index/CMakeFiles/test_index_repeats.dir/test_index_repeats.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_repeats.dir/test_index_repeats.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.cpp -[ 15%] Linking CXX executable ../../bin/test_graph_msa -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_msa.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o -o ../../bin/test_graph_msa -lrt -lz -lbz2 -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:476:9: required from 'SEQAN_TEST_test_find2_index_approx_small_test:: [with auto:4 = seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > >, seqan::VSTree > >; seqan::DnaString = seqan::String, seqan::Alloc<> >; uint8_t = unsigned char]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:509:17: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const seqan::OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; TDir = seqan::Tag; TDistanceTag = seqan::Tag; uint32_t = unsigned int; uint8_t = unsigned char]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:556:25: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const seqan::OptimalSearch&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:571:29: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const std::array, N>&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; long unsigned int N = 3; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:592:25: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::String&, const TDistanceTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TChar = seqan::SimpleType; TStringSpec = seqan::Alloc<>; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:617:35: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::StringSet&, const TDistanceTag&, const TParallelTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TNeedle = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Owner<>; TDistanceTag = seqan::Tag; TParallelTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:481:15: required from 'void SEQAN_TEST_test_find2_index_approx_small_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:44:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 343 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 202 | *refNext = *I; + | ~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:512:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:497:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(T&) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:476:9: required from 'SEQAN_TEST_test_find2_index_approx_small_test:: [with auto:4 = seqan::Iter, seqan::Alloc<> >, seqan::BidirectionalIndex > >, seqan::VSTree > >; seqan::DnaString = seqan::String, seqan::Alloc<> >; uint8_t = unsigned char]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:509:17: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, uint32_t, uint32_t, uint8_t, const seqan::OptimalSearch&, uint8_t, const TDir&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; TDir = seqan::Tag; TDistanceTag = seqan::Tag; uint32_t = unsigned int; uint8_t = unsigned char]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:556:25: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const seqan::OptimalSearch&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:571:29: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const std::array, N>&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; long unsigned int N = 3; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:592:25: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::String&, const TDistanceTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TChar = seqan::SimpleType; TStringSpec = seqan::Alloc<>; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:617:35: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::StringSet&, const TDistanceTag&, const TParallelTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TNeedle = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Owner<>; TDistanceTag = seqan::Tag; TParallelTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:481:15: required from 'void SEQAN_TEST_test_find2_index_approx_small_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:44:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:478:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 478 | return TIterator(me, end(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 203 | *I = *refPrev; + | ~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 15%] Built target test_graph_msa -make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_vstree.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_vstree.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_vstree.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_vstree.dir/depend.internal". -Scanning dependencies of target test_index_vstree -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 15%] Building CXX object tests/index/CMakeFiles/test_index_vstree.dir/test_index_vstree.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_vstree.dir/test_index_vstree.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:476:9: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:556:25: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const seqan::OptimalSearch&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:571:29: required from 'void seqan::_optimalSearchScheme(TDelegate&, seqan::Iter >, seqan::VSTree > >, const TNeedle&, const std::array, N>&, const TDistanceTag&) [with TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndex = seqan::FMIndex<>; TIndexSpec = seqan::Preorder; TNeedle = seqan::String, seqan::Alloc<> >; long unsigned int nbrBlocks = 4; long unsigned int N = 3; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:592:25: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::String&, const TDistanceTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TChar = seqan::SimpleType; TStringSpec = seqan::Alloc<>; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find2_index_approx.h:617:35: required from 'void seqan::find(TDelegate&, seqan::Index >&, const seqan::StringSet&, const TDistanceTag&, const TParallelTag&) [with long unsigned int minErrors = 1; long unsigned int maxErrors = 2; TDelegate = SEQAN_TEST_test_find2_index_approx_small_test::; TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex<>; TNeedle = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Owner<>; TDistanceTag = seqan::Tag; TParallelTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:481:15: required from 'void SEQAN_TEST_test_find2_index_approx_small_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:44:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 243 | *cur = *refPrev; + | ~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, @@ -43211,32 +43656,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = seqan::String > >; TObject = seqan::String, seqan::Alloc<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Alloc<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ +[ 15%] Linking CXX executable ../../bin/test_find +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_find.dir/test_find.cpp.o -o ../../bin/test_find -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, @@ -43367,6 +43789,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 15%] Built target test_find +make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/depend In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, @@ -43419,6 +43844,16 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_vstree.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_vstree.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_vstree.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_vstree.dir/depend.internal". +Scanning dependencies of target test_index_vstree +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 15%] Building CXX object tests/index/CMakeFiles/test_index_vstree.dir/test_index_vstree.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_vstree.dir/test_index_vstree.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, @@ -43549,136 +43984,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:69:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, @@ -43731,136 +44036,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 311 | buffer[pool.handlerArgs(Val_)] = Val_; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 517 | *cb.cur = item; - | ~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 311 | buffer[pool.handlerArgs(Val_)] = Val_; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 517 | *cb.cur = item; - | ~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, @@ -43889,58 +44064,6 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 202 | *refNext = *I; - | ~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 203 | *I = *refPrev; - | ~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 243 | *cur = *refPrev; - | ~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:38: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': @@ -43991,6 +44114,43 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' + 2048 | (_arg1), # _arg1, \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, @@ -44147,170 +44307,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:183:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:81:27: required from 'seqan::Iter >, seqan::VSTree > >::Iter(seqan::Iter >, seqan::VSTree > >::TBiIndex&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::Preorder; seqan::Iter >, seqan::VSTree > >::TBiIndex = seqan::Index, seqan::Alloc<> >, seqan::BidirectionalIndex > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:395:15: required from 'void testOptimalSearchScheme(std::array, N>, const TDistanceTag&) [with long unsigned int nbrBlocks = 1; long unsigned int N = 1; TDistanceTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:420:28: required from 'void SEQAN_TEST_test_find2_index_approx_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:42:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 202 | *refNext = *I; - | ~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 203 | *I = *refPrev; - | ~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 243 | *cur = *refPrev; - | ~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find2_index_approx.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' - 2048 | (_arg1), # _arg1, \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -[ 15%] Linking CXX executable ../../bin/test_align -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align.dir/test_align.cpp.o -o ../../bin/test_align -lrt -lz -lbz2 -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' - 2048 | (_arg1), # _arg1, \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' - 2048 | (_arg1), # _arg1, \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:233, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:38: @@ -44327,13 +44323,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:88:5: note: because 'seqan::Index >, void>, seqan::IndexSa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::ContainerView >, void>; TSpec = void]' 88 | Index(Index const & other) : | ^~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 15%] Built target test_align -make -f tests/index/CMakeFiles/test_index_creation.dir/build.make tests/index/CMakeFiles/test_index_creation.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_creation.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_creation.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_creation.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_creation.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:38: @@ -44353,12 +44342,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ -Scanning dependencies of target test_index_creation -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_creation.dir/build.make tests/index/CMakeFiles/test_index_creation.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 15%] Building CXX object tests/index/CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_view.cpp:38: @@ -44558,11 +44541,99 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 15%] Linking CXX executable ../../bin/test_find -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_find.dir/test_find.cpp.o -o ../../bin/test_find -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' + 2048 | (_arg1), # _arg1, \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_repeats.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +[ 15%] Linking CXX executable ../../bin/test_graph_msa +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_msa.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o -o ../../bin/test_graph_msa -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 15%] Built target test_find +[ 15%] Built target test_graph_msa +make -f tests/index/CMakeFiles/test_index_creation.dir/build.make tests/index/CMakeFiles/test_index_creation.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_creation.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_creation.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_creation.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_creation.dir/depend.internal". +Scanning dependencies of target test_index_creation +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_creation.dir/build.make tests/index/CMakeFiles/test_index_creation.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 15%] Building CXX object tests/index/CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' + 2048 | (_arg1), # _arg1, \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +[ 15%] Linking CXX executable ../../bin/test_align +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_align.dir/test_align.cpp.o -o ../../bin/test_align -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 15%] Built target test_align make -f tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/DependInfo.cmake --color= @@ -44580,8 +44651,11 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 15%] Built target test_index_repeats make -f tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/depend +[ 15%] Linking CXX executable ../../bin/test_index_view +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_view.dir/link.txt --verbose=1 make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/DependInfo.cmake --color= +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_view.dir/test_index_view.cpp.o -o ../../bin/test_index_view -lrt -lz -lbz2 Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/depend.internal". Scanning dependencies of target test_index_crosscompare_char_dfi @@ -44590,9 +44664,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 16%] Building CXX object tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp -[ 16%] Linking CXX executable ../../bin/test_index_view -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_view.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_view.dir/test_index_view.cpp.o -o ../../bin/test_index_view -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 16%] Built target test_index_view make -f tests/index/CMakeFiles/test_index_bifm.dir/build.make tests/index/CMakeFiles/test_index_bifm.dir/depend @@ -44608,43 +44679,6 @@ cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_bifm.dir/test_index_bifm.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' - 2048 | (_arg1), # _arg1, \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:40: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] @@ -44750,6 +44784,43 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' + 2048 | (_arg1), # _arg1, \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: @@ -44798,6 +44869,45 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' + 2048 | (_arg1), # _arg1, \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:35: @@ -44973,29 +45083,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index > >, seqan::IndexWotd<> >; TIndex2 = seqan::Index > >, seqan::IndexWotd > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = seqan::IndexWotd<>; TIndexSpec2 = seqan::IndexWotd >; TText = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = seqan::IndexWotd<>; TIndexSpec2 = seqan::IndexWotd >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:203:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareCharDfi() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:50:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: @@ -45096,38 +45183,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index > >, seqan::IndexWotd<> >; TIndex2 = seqan::Index > >, seqan::IndexWotd > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = seqan::IndexWotd<>; TIndexSpec2 = seqan::IndexWotd >; TText = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = seqan::IndexWotd<>; TIndexSpec2 = seqan::IndexWotd >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:203:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareCharDfi() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:50:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: @@ -45178,33 +45233,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index > >, seqan::IndexWotd<> >; TIndex2 = seqan::Index > >, seqan::IndexWotd > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = seqan::IndexWotd<>; TIndexSpec2 = seqan::IndexWotd >; TText = seqan::StringSet > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = seqan::IndexWotd<>; TIndexSpec2 = seqan::IndexWotd >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:203:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareCharDfi() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:50:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: @@ -45630,41 +45658,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' - 2048 | (_arg1), # _arg1, \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:46: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:46: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: @@ -45715,6 +45708,29 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index > >, seqan::IndexWotd<> >; TIndex2 = seqan::Index > >, seqan::IndexWotd > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = seqan::IndexWotd<>; TIndexSpec2 = seqan::IndexWotd >; TText = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = seqan::IndexWotd<>; TIndexSpec2 = seqan::IndexWotd >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:203:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareCharDfi() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:50:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: @@ -45765,6 +45781,73 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' + 2048 | (_arg1), # _arg1, \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:46: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:46: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index > >, seqan::IndexWotd<> >; TIndex2 = seqan::Index > >, seqan::IndexWotd > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = seqan::IndexWotd<>; TIndexSpec2 = seqan::IndexWotd >; TText = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = seqan::IndexWotd<>; TIndexSpec2 = seqan::IndexWotd >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:203:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareCharDfi() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:50:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: @@ -45865,6 +45948,33 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment >, seqan::InfixSegment>; T2 = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index > >, seqan::IndexWotd<> >; TIndex2 = seqan::Index > >, seqan::IndexWotd > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = seqan::IndexWotd<>; TIndexSpec2 = seqan::IndexWotd >; TText = seqan::StringSet > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:129:45: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = seqan::IndexWotd<>; TIndexSpec2 = seqan::IndexWotd >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:203:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareCharDfi() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:50:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char_dfi.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: @@ -45990,6 +46100,60 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag > >; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(seqan::Iter, seqan::VSTree >&) [with TText = seqan::ModifiedString, seqan::Alloc<> >, seqan::Tag >; TIndexSpec = seqan::IndexEsa<>; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:62:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringReverseEsa() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:54:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] + 1731 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' + 222 | VertexEsa(VertexEsa const &other): + | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FunctorConvert, char> > >; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(seqan::Iter, seqan::VSTree >&) [with TText = seqan::ModifiedString, seqan::Alloc<> >, seqan::FunctorConvert, char> >; TIndexSpec = seqan::IndexEsa<>; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FunctorConvert, char> > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:88:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringViewEsa() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:56:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] + 1731 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' + 222 | VertexEsa(VertexEsa const &other): + | ^~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: @@ -46040,36 +46204,11 @@ 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -46089,6 +46228,38 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag > >; TSpec = seqan::TopDown<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag > >; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(seqan::Iter, seqan::VSTree >&) [with TText = seqan::ModifiedString, seqan::Alloc<> >, seqan::Tag >; TIndexSpec = seqan::IndexEsa<>; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:62:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringReverseEsa() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:54:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' + 222 | VertexEsa(VertexEsa const &other): + | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FunctorConvert, char> > >; TSpec = seqan::TopDown<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FunctorConvert, char> > >; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(seqan::Iter, seqan::VSTree >&) [with TText = seqan::ModifiedString, seqan::Alloc<> >, seqan::FunctorConvert, char> >; TIndexSpec = seqan::IndexEsa<>; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FunctorConvert, char> > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:88:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringViewEsa() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:56:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' + 222 | VertexEsa(VertexEsa const &other): + | ^~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: @@ -46138,36 +46309,32 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag > >; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(seqan::Iter, seqan::VSTree >&) [with TText = seqan::ModifiedString, seqan::Alloc<> >, seqan::Tag >; TIndexSpec = seqan::IndexEsa<>; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:62:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringReverseEsa() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:54:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] - 1731 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' - 222 | VertexEsa(VertexEsa const &other): - | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FunctorConvert, char> > >; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(seqan::Iter, seqan::VSTree >&) [with TText = seqan::ModifiedString, seqan::Alloc<> >, seqan::FunctorConvert, char> >; TIndexSpec = seqan::IndexEsa<>; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FunctorConvert, char> > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:88:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringViewEsa() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:56:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] - 1731 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' - 222 | VertexEsa(VertexEsa const &other): - | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: @@ -46316,63 +46483,6 @@ 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag > >; TSpec = seqan::TopDown<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag > >; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(seqan::Iter, seqan::VSTree >&) [with TText = seqan::ModifiedString, seqan::Alloc<> >, seqan::Tag >; TIndexSpec = seqan::IndexEsa<>; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Tag > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:62:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringReverseEsa() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:54:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' - 222 | VertexEsa(VertexEsa const &other): - | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FunctorConvert, char> > >; TSpec = seqan::TopDown<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FunctorConvert, char> > >; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(seqan::Iter, seqan::VSTree >&) [with TText = seqan::ModifiedString, seqan::Alloc<> >, seqan::FunctorConvert, char> >; TIndexSpec = seqan::IndexEsa<>; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::FunctorConvert, char> > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:88:40: required from 'void seqan::SEQAN_TEST_testIndexModifiedStringViewEsa() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:56:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' - 222 | VertexEsa(VertexEsa const &other): - | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, @@ -46426,55 +46536,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/tests/index/test_sa_bwtwalk.h:120:15: required from 'void seqan::SEQAN_TEST_testBWTWalk() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:58:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: @@ -46524,80 +46585,59 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' - 2048 | (_arg1), # _arg1, \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' + from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/tests/index/test_sa_bwtwalk.h:120:15: required from 'void seqan::SEQAN_TEST_testBWTWalk() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:58:2: required from here +/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:143:15: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:41: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:42: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' @@ -46668,12 +46708,29 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' @@ -46699,8 +46756,9 @@ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:143:15: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' @@ -46721,46 +46779,31 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.h:143:15: required from 'void seqan::SEQAN_TEST_testIndexCreation() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:59:5: required from here +/build/seqan2-2.4.0+dfsg/tests/index/test_sa_bwtwalk.h:120:15: required from 'void seqan::SEQAN_TEST_testBWTWalk() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:58:2: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:41: + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:42: + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -46803,6 +46846,34 @@ 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/tests/index/test_sa_bwtwalk.h:120:15: required from 'void seqan::SEQAN_TEST_testBWTWalk() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:58:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_sa_bwtwalk.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:42: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': @@ -46828,22 +46899,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 16%] Linking CXX executable ../../bin/test_index_crosscompare_char_dfi -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_char_dfi.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o -o ../../bin/test_index_crosscompare_char_dfi -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 16%] Built target test_index_crosscompare_char_dfi -make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_qgram.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_qgram.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_qgram.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_qgram.dir/depend.internal". -Scanning dependencies of target test_index_qgram -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 16%] Building CXX object tests/index/CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:42: @@ -47371,6 +47426,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +[ 16%] Linking CXX executable ../../bin/test_index_crosscompare_char_dfi +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_char_dfi.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o -o ../../bin/test_index_crosscompare_char_dfi -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: @@ -47443,6 +47501,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 16%] Built target test_index_crosscompare_char_dfi +make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_qgram.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_qgram.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_qgram.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_qgram.dir/depend.internal". +Scanning dependencies of target test_index_qgram +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 16%] Building CXX object tests/index/CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: @@ -47840,22 +47911,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:38: -In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', - inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' at /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] - 470 | outRef->i2.i[skipped++] = 0; - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 to object 'seqan::Tuple >::i' with size 7 declared here - 141 | typename StoredTupleValue_::Type i[SIZE]; - | ^ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: @@ -48003,16 +48058,32 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' - 2048 | (_arg1), # _arg1, \ - | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find_base.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:38: +In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', + inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' at /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] + 470 | outRef->i2.i[skipped++] = 0; + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_find_backtracking.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 to object 'seqan::Tuple >::i' with size 7 declared here + 141 | typename StoredTupleValue_::Type i[SIZE]; + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' + 2048 | (_arg1), # _arg1, \ + | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:45: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here @@ -48038,27 +48109,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::IndexQGram > >; TSource = seqan::Index >, seqan::IndexQGram > >; typename seqan::DisableIf > >::Type = void]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::IndexQGram > >; TValue2 = seqan::Index >, seqan::IndexQGram > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::IndexQGram > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::IndexQGram > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::IndexQGram > >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(seqan::Finder, TSpecFinder>&) [with TText = seqan::String >; TSpec = seqan::IndexQGram >; TSpecFinder = const seqan::Tag; typename seqan::Parameter_ >::Type = seqan::Index >, seqan::IndexQGram > >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = seqan::Finder >, seqan::IndexQGram > > >; typename seqan::Parameter_::Type>::Type = seqan::Index >, seqan::IndexQGram > >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index_qgram.h:75:33: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, QGramFindLookup) [with TText = seqan::String >; TSpec = seqan::IndexQGram >; TSpecFinder = const seqan::Tag; TPattern = char [3]; seqan::QGramFindLookup = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::String >; TSpec = seqan::IndexQGram >; TSpecFinder = const seqan::Tag; TPattern = char [3]]' -/build/seqan2-2.4.0+dfsg/tests/index/test_qgram_index.h:327:5: required from 'void seqan::SEQAN_TEST_testQGramFind() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:62:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index >, seqan::IndexQGram > >& seqan::Index >, seqan::IndexQGram > >::operator=(const seqan::Index >, seqan::IndexQGram > >&)' is deprecated [-Wdeprecated-copy] - 110 | target = source; - | ~~~~~~~^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:91, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:45: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index >, seqan::IndexQGram > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::String >; TShapeSpec = seqan::UngappedShape<2>; TSpec = seqan::Tag]' - 278 | Index(Index const &other): - | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:35: @@ -48923,6 +48973,27 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index >, seqan::IndexQGram > >; TSource = seqan::Index >, seqan::IndexQGram > >; typename seqan::DisableIf > >::Type = void]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index >, seqan::IndexQGram > >; TValue2 = seqan::Index >, seqan::IndexQGram > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index >, seqan::IndexQGram > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index >, seqan::IndexQGram > >; typename seqan::Reference > >::Type = seqan::Index >, seqan::IndexQGram > >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(seqan::Finder, TSpecFinder>&) [with TText = seqan::String >; TSpec = seqan::IndexQGram >; TSpecFinder = const seqan::Tag; typename seqan::Parameter_ >::Type = seqan::Index >, seqan::IndexQGram > >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = seqan::Finder >, seqan::IndexQGram > > >; typename seqan::Parameter_::Type>::Type = seqan::Index >, seqan::IndexQGram > >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index_qgram.h:75:33: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, QGramFindLookup) [with TText = seqan::String >; TSpec = seqan::IndexQGram >; TSpecFinder = const seqan::Tag; TPattern = char [3]; seqan::QGramFindLookup = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::String >; TSpec = seqan::IndexQGram >; TSpecFinder = const seqan::Tag; TPattern = char [3]]' +/build/seqan2-2.4.0+dfsg/tests/index/test_qgram_index.h:327:5: required from 'void seqan::SEQAN_TEST_testQGramFind() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:62:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index >, seqan::IndexQGram > >& seqan::Index >, seqan::IndexQGram > >::operator=(const seqan::Index >, seqan::IndexQGram > >&)' is deprecated [-Wdeprecated-copy] + 110 | target = source; + | ~~~~~~~^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:91, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_qgram.cpp:45: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram.h:278:5: note: because 'seqan::Index >, seqan::IndexQGram > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::String >; TShapeSpec = seqan::UngappedShape<2>; TSpec = seqan::Tag]' + 278 | Index(Index const &other): + | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_bifm.cpp:35: @@ -49930,11 +50001,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 16%] Linking CXX executable ../../bin/test_index_qgram -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_qgram.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o -o ../../bin/test_index_qgram -lrt -lz -lbz2 +[ 16%] Linking CXX executable ../../bin/test_index_sa_bwtwalk +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_sa_bwtwalk.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_sa_bwtwalk.dir/test_index_sa_bwtwalk.cpp.o -o ../../bin/test_index_sa_bwtwalk -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 16%] Built target test_index_qgram +[ 16%] Built target test_index_sa_bwtwalk make -f tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_dna.dir/DependInfo.cmake --color= @@ -49946,30 +50017,30 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 16%] Building CXX object tests/index/CMakeFiles/test_index_crosscompare_dna.dir/test_index_crosscompare_dna.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_crosscompare_dna.dir/test_index_crosscompare_dna.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp -[ 16%] Linking CXX executable ../../bin/test_index_sa_bwtwalk -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_sa_bwtwalk.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_sa_bwtwalk.dir/test_index_sa_bwtwalk.cpp.o -o ../../bin/test_index_sa_bwtwalk -lrt -lz -lbz2 +[ 16%] Linking CXX executable ../../bin/test_find_backtracking +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find_backtracking.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o -o ../../bin/test_find_backtracking -lrt -lz -lbz2 +[ 16%] Linking CXX executable ../../bin/test_index_qgram +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_qgram.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o -o ../../bin/test_index_qgram -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 16%] Built target test_index_sa_bwtwalk +[ 16%] Built target test_index_qgram make -f tests/index/CMakeFiles/test_index_finder.dir/build.make tests/index/CMakeFiles/test_index_finder.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_finder.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_finder.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_finder.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_finder.dir/depend.internal". +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target test_index_finder make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/index/CMakeFiles/test_index_finder.dir/build.make tests/index/CMakeFiles/test_index_finder.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 16%] Building CXX object tests/index/CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp -[ 16%] Linking CXX executable ../../bin/test_find_backtracking -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find_backtracking.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_find_backtracking.dir/test_find_backtracking.cpp.o -o ../../bin/test_find_backtracking -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 16%] Built target test_find_backtracking make -f tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/depend +[ 16%] Building CXX object tests/index/CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/depend.internal". Scanning dependencies of target test_index_fm_rank_dictionary @@ -49978,6 +50049,22 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 16%] Building CXX object tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm_rank_dictionary.cpp +[ 16%] Linking CXX executable ../../bin/test_find2_index_approx +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find2_index_approx.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o -o ../../bin/test_find2_index_approx -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 16%] Built target test_find2_index_approx +make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_shapes.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_shapes.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_shapes.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_shapes.dir/depend.internal". +Scanning dependencies of target test_index_shapes +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 16%] Building CXX object tests/index/CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_shapes.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: @@ -50015,41 +50102,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' - 2048 | (_arg1), # _arg1, \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: @@ -50130,8 +50182,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -[ 16%] Linking CXX executable ../../bin/test_find2_index_approx -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find2_index_approx.dir/link.txt --verbose=1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: @@ -50152,7 +50202,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_find2_index_approx.dir/test_find2_index_approx.cpp.o -o ../../bin/test_find2_index_approx -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: @@ -50195,7 +50244,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: @@ -50211,18 +50259,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 16%] Built target test_find2_index_approx In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_shapes.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_shapes.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_shapes.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_shapes.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: @@ -50265,41 +50307,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -Scanning dependencies of target test_index_shapes -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 16%] Building CXX object tests/index/CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_shapes.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(seqan::Finder, TSpecFinder>&) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(seqan::Finder, TSpecFinder>::TIndex&) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; seqan::Finder, TSpecFinder>::TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:28: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 178 | me.range.i1 = me.range.i2 = TIterator(); - | ~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' - 105 | Iter(Iter const & other_) : - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 178 | me.range.i1 = me.range.i2 = TIterator(); - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' - 105 | Iter(Iter const & other_) : - | ^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: @@ -50323,35 +50330,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(seqan::Finder, TSpecFinder>&) [with TText = seqan::String, seqan::Packed<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(seqan::Finder, TSpecFinder>::TIndex&) [with TText = seqan::String, seqan::Packed<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; seqan::Finder, TSpecFinder>::TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:28: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 178 | me.range.i1 = me.range.i2 = TIterator(); - | ~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' - 105 | Iter(Iter const & other_) : - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 178 | me.range.i1 = me.range.i2 = TIterator(); - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' - 105 | Iter(Iter const & other_) : - | ^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: @@ -50418,35 +50396,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(seqan::Finder, TSpecFinder>&) [with TText = seqan::String, seqan::Packed<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(seqan::Finder, TSpecFinder>::TIndex&) [with TText = seqan::String, seqan::Packed<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; seqan::Finder, TSpecFinder>::TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:28: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 178 | me.range.i1 = me.range.i2 = TIterator(); - | ~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' - 105 | Iter(Iter const & other_) : - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 178 | me.range.i1 = me.range.i2 = TIterator(); - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' - 105 | Iter(Iter const & other_) : - | ^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: @@ -50514,35 +50463,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(seqan::Finder, TSpecFinder>&) [with TText = seqan::String >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(seqan::Finder, TSpecFinder>::TIndex&) [with TText = seqan::String >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; seqan::Finder, TSpecFinder>::TIndex = seqan::Index >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:28: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 178 | me.range.i1 = me.range.i2 = TIterator(); - | ~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' - 105 | Iter(Iter const & other_) : - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 178 | me.range.i1 = me.range.i2 = TIterator(); - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' - 105 | Iter(Iter const & other_) : - | ^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: @@ -50565,64 +50485,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(seqan::Finder, TSpecFinder>&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(seqan::Finder, TSpecFinder>::TIndex&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; seqan::Finder, TSpecFinder>::TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:28: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 178 | me.range.i1 = me.range.i2 = TIterator(); - | ~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' - 105 | Iter(Iter const & other_) : - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 178 | me.range.i1 = me.range.i2 = TIterator(); - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' - 105 | Iter(Iter const & other_) : - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(seqan::Finder, TSpecFinder>&) [with TText = seqan::StringSet > >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(seqan::Finder, TSpecFinder>::TIndex&) [with TText = seqan::StringSet > >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; seqan::Finder, TSpecFinder>::TIndex = seqan::Index > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:28: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 178 | me.range.i1 = me.range.i2 = TIterator(); - | ~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' - 105 | Iter(Iter const & other_) : - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 178 | me.range.i1 = me.range.i2 = TIterator(); - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' - 105 | Iter(Iter const & other_) : - | ^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: @@ -50757,6 +50619,410 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TIndex2 = seqan::Index, seqan::Alloc<> > >, seqan::IndexWotd<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = seqan::IndexEsa<>; TIndexSpec2 = seqan::IndexWotd<>; TText = seqan::StringSet, seqan::Alloc<> > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:175:45: required from 'void seqan::crossIndicesDna() [with TIndexSpec1 = seqan::IndexEsa<>; TIndexSpec2 = seqan::IndexWotd<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:208:46: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDna() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:52:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' + 2048 | (_arg1), # _arg1, \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:136, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_concat_direct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >*; TParam = const seqan::StringSet, seqan::Packed<> >, seqan::Owner > >&]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >*; TParam = const seqan::StringSet, seqan::Packed<> >, seqan::Owner > >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Packed<> >, seqan::Owner > >, seqan::Tag >; TValue = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >; typename seqan::Value::Type = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >; TValue2 = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >; typename seqan::Reference > >::Type = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:786:21: required from 'typename seqan::Fibre, const seqan::Tag >::Type& seqan::getFibre(seqan::Index&, FibreText) [with TText = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >; TSpec = seqan::IndexEsa<>; typename seqan::Fibre, const seqan::Tag >::Type = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >; seqan::FibreText = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:1357:122: required from 'typename seqan::Fibre, const seqan::Tag >::Type& seqan::indexText(seqan::Index&) [with TText = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >; TSpec = seqan::IndexEsa<>; typename seqan::Fibre, const seqan::Tag >::Type = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:98:5: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Packed<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:216:52: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_concat_direct.h:81:7: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] + 81 | class StringSet > > + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::StringSet, seqan::Packed<> >, seqan::Owner > >::StringSet(const seqan::StringSet, seqan::Packed<> >, seqan::Owner > >&)' first required here + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Packed<> >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Packed<> >, seqan::Packed<> >, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Packed<> >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Packed<> >, seqan::Packed<> >, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Packed<> >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Packed<> >, seqan::Packed<> >, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String, seqan::Packed<> >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:947:29: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TIndex2 = seqan::Index, seqan::Packed<> >, seqan::Owner > >, seqan::IndexEsa<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Packed<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:216:52: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::External > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::External > >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::External > > >, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::External > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::External > >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::External > > >, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment, seqan::External > >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::External > >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::External > > >, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment, seqan::External > >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String, seqan::External > >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:947:29: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::External > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::External > >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TIndex2 = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::External > >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::External >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::External > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::External > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::External > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::External > >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::External > >, seqan::InfixSegment>; TIterator = seqan::ExtStringFwdConstIterator, seqan::External > > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::External > >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::MMap<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::MMap<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::MMap<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String, seqan::MMap<> >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:947:29: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TIndex2 = seqan::Index, seqan::MMap<> >, seqan::Owner > >, seqan::IndexEsa<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::MMap<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::MMap<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:218:50: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::MMap<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm_rank_dictionary.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' + 2048 | (_arg1), # _arg1, \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm_rank_dictionary.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm_rank_dictionary.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm_rank_dictionary.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(seqan::Finder, TSpecFinder>&) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(seqan::Finder, TSpecFinder>::TIndex&) [with TText = seqan::String, seqan::Alloc<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; seqan::Finder, TSpecFinder>::TIndex = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:28: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 178 | me.range.i1 = me.range.i2 = TIterator(); + | ~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 178 | me.range.i1 = me.range.i2 = TIterator(); + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> >, void, seqan::FMIndexConfig >]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(seqan::Finder, TSpecFinder>&) [with TText = seqan::String, seqan::Packed<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(seqan::Finder, TSpecFinder>::TIndex&) [with TText = seqan::String, seqan::Packed<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; seqan::Finder, TSpecFinder>::TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:28: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 178 | me.range.i1 = me.range.i2 = TIterator(); + | ~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 178 | me.range.i1 = me.range.i2 = TIterator(); + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(seqan::Finder, TSpecFinder>&) [with TText = seqan::String, seqan::Packed<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(seqan::Finder, TSpecFinder>::TIndex&) [with TText = seqan::String, seqan::Packed<> >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; seqan::Finder, TSpecFinder>::TIndex = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:28: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 178 | me.range.i1 = me.range.i2 = TIterator(); + | ~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 178 | me.range.i1 = me.range.i2 = TIterator(); + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Packed<> >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Packed<> >, void, seqan::FMIndexConfig >]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(seqan::Finder, TSpecFinder>&) [with TText = seqan::String >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(seqan::Finder, TSpecFinder>::TIndex&) [with TText = seqan::String >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; seqan::Finder, TSpecFinder>::TIndex = seqan::Index >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:28: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 178 | me.range.i1 = me.range.i2 = TIterator(); + | ~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 178 | me.range.i1 = me.range.i2 = TIterator(); + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA >, void, seqan::FMIndexConfig >]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(seqan::Finder, TSpecFinder>&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(seqan::Finder, TSpecFinder>::TIndex&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; seqan::Finder, TSpecFinder>::TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:28: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 178 | me.range.i1 = me.range.i2 = TIterator(); + | ~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 178 | me.range.i1 = me.range.i2 = TIterator(); + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Alloc<> > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA, seqan::Alloc<> > >, void, seqan::FMIndexConfig >]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'void seqan::clear(seqan::Finder, TSpecFinder>&) [with TText = seqan::StringSet > >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:87:18: required from 'seqan::Finder, TSpecFinder>::Finder(seqan::Finder, TSpecFinder>::TIndex&) [with TText = seqan::StringSet > >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; seqan::Finder, TSpecFinder>::TIndex = seqan::Index > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:62:28: required from 'IndexFinderTest::IndexFinderTest() [with TIndex_ = seqan::Index > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from 'IndexFinderTest__FindFirstChar::IndexFinderTest__FindFirstChar() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: recursively required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexEsa<> >; TSubList = seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/test_system.h:250:60: required from 'static bool seqan::TypedTestFactory_ >::make(const char*, const char*) [with TTestCase = IndexFinderTest__FindFirstChar; TType = seqan::Index >, seqan::IndexSa<> >; TSubList = seqan::TagList >, seqan::IndexEsa<> >, seqan::TagList, seqan::Alloc<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList, seqan::Packed<> >, seqan::FMIndex<> >, seqan::TagList >, seqan::FMIndex<> >, seqan::TagList, seqan::Alloc<> > >, seqan::FMIndex<> >, seqan::TagList > >, seqan::FMIndex<> > > > > > > > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:72:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:35: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 178 | me.range.i1 = me.range.i2 = TIterator(); + | ~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:178:21: warning: implicitly-declared 'constexpr seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >& seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 178 | me.range.i1 = me.range.i2 = TIterator(); + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter > >, void, seqan::FMIndexConfig >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = const seqan::CompressedSA > >, void, seqan::FMIndexConfig >]' + 105 | Iter(Iter const & other_) : + | ^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:220, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h: In instantiation of 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::FMIndex<>; TSpecFinder = const seqan::Tag; TPattern = char [7]]': @@ -52157,166 +52423,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::PrefixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TIndex2 = seqan::Index, seqan::Alloc<> > >, seqan::IndexWotd<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:87:66: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = seqan::IndexEsa<>; TIndexSpec2 = seqan::IndexWotd<>; TText = seqan::StringSet, seqan::Alloc<> > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:175:45: required from 'void seqan::crossIndicesDna() [with TIndexSpec1 = seqan::IndexEsa<>; TIndexSpec2 = seqan::IndexWotd<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:208:46: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDna() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:52:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:136, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_concat_direct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >*; TParam = const seqan::StringSet, seqan::Packed<> >, seqan::Owner > >&]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >*; TParam = const seqan::StringSet, seqan::Packed<> >, seqan::Owner > >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Packed<> >, seqan::Owner > >, seqan::Tag >; TValue = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >; typename seqan::Value::Type = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >; TValue2 = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >; typename seqan::Reference > >::Type = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:786:21: required from 'typename seqan::Fibre, const seqan::Tag >::Type& seqan::getFibre(seqan::Index&, FibreText) [with TText = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >; TSpec = seqan::IndexEsa<>; typename seqan::Fibre, const seqan::Tag >::Type = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >; seqan::FibreText = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:1357:122: required from 'typename seqan::Fibre, const seqan::Tag >::Type& seqan::indexText(seqan::Index&) [with TText = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >; TSpec = seqan::IndexEsa<>; typename seqan::Fibre, const seqan::Tag >::Type = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:98:5: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Packed<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:216:52: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_concat_direct.h:81:7: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] - 81 | class StringSet > > - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::StringSet, seqan::Packed<> >, seqan::Owner > >::StringSet(const seqan::StringSet, seqan::Packed<> >, seqan::Owner > >&)' first required here - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Packed<> >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Packed<> >, seqan::Packed<> >, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Packed<> >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Packed<> >, seqan::Packed<> >, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Packed<> >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::Packed<> >, seqan::Packed<> >, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String, seqan::Packed<> >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:947:29: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TIndex2 = seqan::Index, seqan::Packed<> >, seqan::Owner > >, seqan::IndexEsa<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Packed<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Packed<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:216:52: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Packed<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Packed<> >, seqan::Packed<> >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Packed<> >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::External > >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::External > >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::External > > >, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::External > >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::External > >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::External > > >, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment, seqan::External > >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::External > >, seqan::InfixSegment>, seqan::AdaptorIterator, seqan::External > > >, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment, seqan::External > >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String, seqan::External > >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:947:29: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::External > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::External > >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TIndex2 = seqan::Index, seqan::External > >, seqan::Owner > >, seqan::IndexEsa<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::External > >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::External >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:217:54: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::External > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::External > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::External > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::External > >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::External > >, seqan::InfixSegment>; TIterator = seqan::ExtStringFwdConstIterator, seqan::External > > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::External > >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::MMap<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::MMap<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::MMap<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String, seqan::MMap<> >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:947:29: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; T2 = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:70:9: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TIndex2 = seqan::Index, seqan::MMap<> >, seqan::Owner > >, seqan::IndexEsa<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:105:64: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::MMap<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::MMap<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:218:50: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::MMap<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::MMap<> >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: @@ -52817,41 +52923,6 @@ | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm_rank_dictionary.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' - 2048 | (_arg1), # _arg1, \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm_rank_dictionary.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm_rank_dictionary.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm_rank_dictionary.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_shapes.cpp:41: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] @@ -52995,6 +53066,178 @@ | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +[ 16%] Linking CXX executable ../../bin/test_index_shapes +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_shapes.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o -o ../../bin/test_index_shapes -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 16%] Built target test_index_shapes +make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/depend.internal". +Scanning dependencies of target test_index_crosscompare_char +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/build +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 16%] Building CXX object tests/index/CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' @@ -53020,6 +53263,58 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 311 | buffer[pool.handlerArgs(Val_)] = Val_; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 517 | *cb.cur = item; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' @@ -53068,6 +53363,58 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: @@ -53093,6 +53440,84 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: @@ -53122,26 +53547,52 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 311 | buffer[pool.handlerArgs(Val_)] = Val_; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 517 | *cb.cur = item; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, @@ -53169,6 +53620,32 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: @@ -53246,32 +53723,6 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' @@ -53320,84 +53771,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: @@ -53423,32 +53796,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: @@ -53674,58 +54021,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 311 | buffer[pool.handlerArgs(Val_)] = Val_; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 517 | *cb.cur = item; - | ~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: @@ -53926,110 +54221,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: @@ -54084,26 +54275,52 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 202 | *refNext = *I; + | ~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 203 | *I = *refPrev; + | ~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 243 | *cur = *refPrev; + | ~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, @@ -54210,52 +54427,52 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, @@ -54360,32 +54577,6 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' @@ -54484,6 +54675,58 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 202 | *refNext = *I; + | ~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 203 | *I = *refPrev; + | ~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 243 | *cur = *refPrev; + | ~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: @@ -54511,6 +54754,58 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 202 | *refNext = *I; + | ~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 203 | *I = *refPrev; + | ~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 243 | *cur = *refPrev; + | ~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' @@ -54611,230 +54906,6 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 202 | *refNext = *I; - | ~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 203 | *I = *refPrev; - | ~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 243 | *cur = *refPrev; - | ~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 311 | buffer[pool.handlerArgs(Val_)] = Val_; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 517 | *cb.cur = item; - | ~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 202 | *refNext = *I; - | ~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 203 | *I = *refPrev; - | ~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 243 | *cur = *refPrev; - | ~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -[ 16%] Linking CXX executable ../../bin/test_index_shapes -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_shapes.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o -o ../../bin/test_index_shapes -lrt -lz -lbz2 -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:100:104: required from 'void seqan::crossSameIndex(TText1&, TText2&) [with TIndexSpec = seqan::IndexEsa<>; TText1 = seqan::StringSet, seqan::Alloc<> > >; TText2 = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:191:32: required from 'void seqan::crossStringsDna() [with TIndexSpec = seqan::IndexEsa<>; TStringSpec1 = seqan::Alloc<>; TStringSpec2 = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:215:51: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaStrings() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 202 | *refNext = *I; - | ~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 203 | *I = *refPrev; - | ~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 243 | *cur = *refPrev; - | ~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 16%] Built target test_index_shapes -make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/depend.internal". -Scanning dependencies of target test_index_crosscompare_char -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 16%] Building CXX object tests/index/CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' @@ -56006,21 +56077,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: -In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', - inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' at /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] - 470 | outRef->i2.i[skipped++] = 0; - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 to object 'seqan::Tuple >::i' with size 7 declared here - 141 | typename StoredTupleValue_::Type i[SIZE]; - | ^ +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: @@ -56051,12 +56111,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 3 to object 'seqan::Tuple >::i' with size 3 declared here 141 | typename StoredTupleValue_::Type i[SIZE]; | ^ -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:42: + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:36: In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' at /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] @@ -56064,26 +56123,21 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:39: + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]': /build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 to object 'seqan::Tuple >::i' with size 7 declared here 141 | typename StoredTupleValue_::Type i[SIZE]; | ^ -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 /usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 /usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 /usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: + from /build/seqan2-2.4.0+dfsg/tests/index/test_crosscompare.h:40, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:42: In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' at /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] @@ -56091,11 +56145,13 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:40: + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_char.cpp:39: /build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]': /build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 to object 'seqan::Tuple >::i' with size 7 declared here 141 | typename StoredTupleValue_::Type i[SIZE]; | ^ +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 /usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 /usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': @@ -56106,6 +56162,21 @@ /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 /usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = Match >*; _Distance = long int; _Tp = Match >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >, const seqan::Tag > >]': /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type 'Match >' changed in GCC 9.1 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:43: +In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', + inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' at /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] + 470 | outRef->i2.i[skipped++] = 0; + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_creation.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 to object 'seqan::Tuple >::i' with size 7 declared here + 141 | typename StoredTupleValue_::Type i[SIZE]; + | ^ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_vstree.cpp:35: @@ -56133,22 +56204,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 16%] Building CXX object tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna_dfi.cpp -[ 17%] Linking CXX executable ../../bin/test_index_fm_rank_dictionary -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_fm_rank_dictionary.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o -o ../../bin/test_index_fm_rank_dictionary -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 17%] Built target test_index_fm_rank_dictionary -make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/depend.internal". -Scanning dependencies of target test_index_drawing -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 17%] Building CXX object tests/index/CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna_dfi.cpp:39: @@ -56186,6 +56241,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +[ 17%] Linking CXX executable ../../bin/test_index_fm_rank_dictionary +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_fm_rank_dictionary.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o -o ../../bin/test_index_fm_rank_dictionary -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 17%] Built target test_index_fm_rank_dictionary +make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/depend.internal". +Scanning dependencies of target test_index_drawing +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 17%] Building CXX object tests/index/CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna_dfi.cpp:39: @@ -56325,13 +56396,6 @@ | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In function 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Packed<> >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:9: warning: '' is used uninitialized in this function [-Wuninitialized] - 102 | data_iterator = TIterator(); - | ^~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_drawing.cpp:36: @@ -56470,6 +56534,29 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_crosscompare_dna.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In function 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Packed<> >; TSpec = seqan::Owner >; TAlgSpec = seqan::Skew7]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:9: warning: '' is used uninitialized in this function [-Wuninitialized] + 102 | data_iterator = TIterator(); + | ^~~~~~~~~~~~~ +[ 17%] Linking CXX executable ../../bin/test_index_crosscompare_dna_dfi +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_dna_dfi.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o -o ../../bin/test_index_crosscompare_dna_dfi -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 17%] Built target test_index_crosscompare_dna_dfi +make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/depend.internal". +Scanning dependencies of target test_index_fm +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 17%] Building CXX object tests/index/CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm_sparse_string.cpp:39: @@ -56505,27 +56592,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 17%] Linking CXX executable ../../bin/test_index_crosscompare_dna_dfi -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_dna_dfi.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o -o ../../bin/test_index_crosscompare_dna_dfi -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 17%] Built target test_index_crosscompare_dna_dfi -make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/depend.internal". -Scanning dependencies of target test_index_fm -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 17%] Building CXX object tests/index/CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp -[ 17%] Linking CXX executable ../../bin/test_index_fm_sparse_string -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_fm_sparse_string.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_fm_sparse_string.dir/test_index_fm_sparse_string.cpp.o -o ../../bin/test_index_fm_sparse_string -lrt -lz -lbz2 +[ 17%] Linking CXX executable ../../bin/test_index_drawing +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_drawing.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o -o ../../bin/test_index_drawing -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 17%] Built target test_index_fm_sparse_string +[ 17%] Built target test_index_drawing make -f tests/index/CMakeFiles/test_index_base.dir/build.make tests/index/CMakeFiles/test_index_base.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_base.dir/DependInfo.cmake --color= @@ -56537,38 +56608,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 17%] Building CXX object tests/index/CMakeFiles/test_index_base.dir/test_index_base.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_index_base.dir/test_index_base.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp -[ 17%] Linking CXX executable ../../bin/test_index_drawing -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_drawing.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o -o ../../bin/test_index_drawing -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 17%] Built target test_index_drawing -make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_set /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set/CMakeFiles/test_journaled_set.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set/CMakeFiles/test_journaled_set.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set/CMakeFiles/test_journaled_set.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set/CMakeFiles/test_journaled_set.dir/depend.internal". -Scanning dependencies of target test_journaled_set -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 17%] Building CXX object tests/journaled_set/CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/journaled_set/test_journaled_set.cpp -[ 17%] Linking CXX executable ../../bin/test_index_creation -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_creation.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o -o ../../bin/test_index_creation -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 17%] Built target test_index_creation -make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/depend.internal". -Scanning dependencies of target test_journaled_string_tree_find -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 17%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: @@ -56604,6 +56643,38 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +[ 17%] Linking CXX executable ../../bin/test_index_fm_sparse_string +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_fm_sparse_string.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_fm_sparse_string.dir/test_index_fm_sparse_string.cpp.o -o ../../bin/test_index_fm_sparse_string -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 17%] Built target test_index_fm_sparse_string +make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_set /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set/CMakeFiles/test_journaled_set.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set/CMakeFiles/test_journaled_set.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set/CMakeFiles/test_journaled_set.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set/CMakeFiles/test_journaled_set.dir/depend.internal". +Scanning dependencies of target test_journaled_set +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 17%] Building CXX object tests/journaled_set/CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/journaled_set/test_journaled_set.cpp +[ 17%] Linking CXX executable ../../bin/test_index_creation +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_creation.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o -o ../../bin/test_index_creation -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 17%] Built target test_index_creation +make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/depend.internal". +Scanning dependencies of target test_journaled_string_tree_find +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 17%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, @@ -56856,244 +56927,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry::TDeltaPos, seqan::DeltaMapEntry::TDeltaRecord, const TCoverage&, seqan::DeltaEndType) [with TRefPos = long unsigned int; TStorePos = long unsigned int; seqan::DeltaMapEntry::TDeltaPos = long unsigned int; seqan::DeltaMapEntry::TDeltaRecord = seqan::Pair >; seqan::DeltaMapEntry::TCoverage = seqan::String >]': -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:507:17: required from 'void seqan::impl::insert(const seqan::Iter >&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TTag&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(seqan::DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TDeltaType = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(seqan::JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = seqan::String, seqan::Alloc<> >; TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TPos = int; TValue = char; TIds = std::vector; TDeltaType = seqan::Tag; typename seqan::EnableIf >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_mock.h:164:15: required from 'static TJst JstMockGenerator::_createComplexJst() [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:82:57: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:115:29: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 115 | deltaTypeEnd(endType) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:77, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = long unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = long unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(seqan::TraverserImpl >&, TSize, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TSize = long unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:290:16: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 51 | class JstTraversalNode - | ^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:830:18: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(const seqan::JstTraversalNode, seqan::Alloc<> > > >&)' first required here - 830 | auto child = *parentPtr; - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:79, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h: In instantiation of 'void SEQAN_TEST_test_journaled_string_tree_traverser_constructor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:50:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 50 | class TraverserImpl > - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:101:20: note: synthesized method 'seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >::TraverserImpl(const seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >&)' first required here - 101 | TTraverser travCopy(traverser); - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionReference(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]': -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:390:39: required from 'typename seqan::Position > >::Type seqan::position(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:67:28: required from 'void TestHelperHitCollector_::operator()() [with TTraverser = seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:263:17: required from 'decltype (seqan::impl::run(extension._derived, traverser, TCxtPosition()).first) seqan::run(seqan::JstExtensionBase&, const TTraverser&, TDelegate&&) [with TExtension = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TCxtPosition = seqan::Tag; TTraverser = seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; decltype (seqan::impl::run(extension._derived, traverser, TCxtPosition()).first) = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:289:25: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:968:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 968 | auto tmp = impl::baseNode(me).coverage; - | ^~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionBranch(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]': -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:392:36: required from 'typename seqan::Position > >::Type seqan::position(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:67:28: required from 'void TestHelperHitCollector_::operator()() [with TTraverser = seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:263:17: required from 'decltype (seqan::impl::run(extension._derived, traverser, TCxtPosition()).first) seqan::run(seqan::JstExtensionBase&, const TTraverser&, TDelegate&&) [with TExtension = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TCxtPosition = seqan::Tag; TTraverser = seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; decltype (seqan::impl::run(extension._derived, traverser, TCxtPosition()).first) = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:289:25: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:999:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 999 | auto tmp = impl::activeNode(me).coverage; - | ^~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:79, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h: In instantiation of 'seqan::TraverserImpl >::TraverserImpl(seqan::TraverserImpl >&&, typename seqan::EnableIf >::Type*) [with TOtherJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::EnableIf >::Type = void]': -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:119:20: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_constructor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:134:65: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 134 | _needInitialization(std::move(other._needInitialization)) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::InsertValueToString_::insertValue_(T&, TPosition, TValue&) [with T = seqan::String, seqan::Alloc<> >; TPosition = long int; TValue = const seqan::DeltaMapEntry; TExpand = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1410:54: required from 'void seqan::insertValue(seqan::String&, TPosition, const TValue&, seqan::Tag) [with TTargetValue = seqan::DeltaMapEntry; TTargetSpec = seqan::Alloc<>; TPosition = long int; TValue = seqan::DeltaMapEntry; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1010:16: required from 'void seqan::insertValue(T&&, TPosition, TValue&&) [with T = seqan::String, seqan::Alloc<> >&; TPosition = long int; TValue = seqan::DeltaMapEntry]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:506:16: required from 'void seqan::impl::insert(const seqan::Iter >&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TTag&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(seqan::DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TDeltaType = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(seqan::JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = seqan::String, seqan::Alloc<> >; TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TPos = int; TValue = char; TIds = std::vector; TDeltaType = seqan::Tag; typename seqan::EnableIf >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_mock.h:164:15: required from 'static TJst JstMockGenerator::_createComplexJst() [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:82:57: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 86 | class DeltaMapEntry - | ^~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1396:33: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(const seqan::DeltaMapEntry&)' first required here - 1396 | typename Value::Type temp_copy = _value; //temp copy because resizeSpace could invalidate _value - | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:76, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h: In instantiation of 'void seqan::impl::create(seqan::JstBuffer_&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:17: required from 'bool seqan::create(seqan::JstBuffer_&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:11: required from 'void seqan::init(seqan::JstBuffer_&, TJst&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:9: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:282:9: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 328 | f.setIt = jSetSplitter[jobId]; - | ~~~~~~~~^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >]' - 105 | Iter(Iter const & other_) : - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'decltype (seqan::bitScanForward(node.coverage)) seqan::impl::selectProxy(const TTraverserNode&, const SelectValidProxy&) [with TTraverserNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; decltype (seqan::bitScanForward(node.coverage)) = long unsigned int; seqan::SelectValidProxy = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:580:38: required from 'bool seqan::impl::createBranch(seqan::TraverserImpl >&, TTraversalNode&, TTraversalNode&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TProxySelection = seqan::SelectValidProxy_]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:831:35: required from 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = long unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = long unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(seqan::TraverserImpl >&, TSize, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TSize = long unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:290:16: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:528:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 528 | auto tmp1 = node.coverage; - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::DeltaMapEntry*; TSource1 = seqan::DeltaMapEntry*; TSource2 = seqan::DeltaMapEntry*]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::DeltaMapEntry]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::DeltaMapEntry]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::DeltaMapEntry; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::DeltaMapEntry; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_alloc.h:123:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::DeltaMapEntry; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:110:7: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 86 | class DeltaMapEntry - | ^~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry&&)' first required here - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -57117,68 +56950,25 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionReference(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]': -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:390:39: required from 'typename seqan::Position > >::Type seqan::position(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:357:36: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_basic_traversal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:56:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:968:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 968 | auto tmp = impl::baseNode(me).coverage; - | ^~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionBranch(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]': -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:392:36: required from 'typename seqan::Position > >::Type seqan::position(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:357:36: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_basic_traversal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:56:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:999:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 999 | auto tmp = impl::activeNode(me).coverage; - | ^~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:77, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::JstTraversalNode, seqan::Alloc<> > > >*; TParam = seqan::JstTraversalNode, seqan::Alloc<> > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::JstTraversalNode, seqan::Alloc<> > > >*; TParam = seqan::JstTraversalNode, seqan::Alloc<> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_block.h:402:19: required from 'void seqan::appendValue(seqan::String >&, TValue&&, seqan::Tag) [with TTargetValue = seqan::JstTraversalNode, seqan::Alloc<> > > >; long unsigned int SPACE = 4096; TValue = seqan::JstTraversalNode, seqan::Alloc<> > > >; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::String, seqan::Alloc<> > > >, seqan::Block<> >&; TSource = seqan::JstTraversalNode, seqan::Alloc<> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:175:16: required from 'void seqan::impl::pushNode(seqan::TraverserImpl >&, TTraversalNode&&, TObserver&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:926:19: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:282:9: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 51 | class JstTraversalNode - | ^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(seqan::JstTraversalNode, seqan::Alloc<> > > >&&)' first required here - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -57202,34 +56992,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:48, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -57299,56 +57061,49 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:48, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry::TDeltaPos, seqan::DeltaMapEntry::TDeltaRecord, const TCoverage&, seqan::DeltaEndType) [with TRefPos = long unsigned int; TStorePos = long unsigned int; seqan::DeltaMapEntry::TDeltaPos = long unsigned int; seqan::DeltaMapEntry::TDeltaRecord = seqan::Pair >; seqan::DeltaMapEntry::TCoverage = seqan::String >]': +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:507:17: required from 'void seqan::impl::insert(const seqan::Iter >&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TTag&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(seqan::DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TDeltaType = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(seqan::JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = seqan::String, seqan::Alloc<> >; TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TPos = int; TValue = char; TIds = std::vector; TDeltaType = seqan::Tag; typename seqan::EnableIf >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_mock.h:164:15: required from 'static TJst JstMockGenerator::_createComplexJst() [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:82:57: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:115:29: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 115 | deltaTypeEnd(endType) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:77, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(seqan::TraverserImpl >&, TSize, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::SelectValidProxy_]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:506:12: required from 'void seqan::advance(seqan::TraverserImpl >&, TSize) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TSize = int]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:288:16: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_at_end() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:50:5: required from here + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = long unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = long unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(seqan::TraverserImpl >&, TSize, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TSize = long unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:290:16: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 51 | class JstTraversalNode | ^~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:830:18: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(const seqan::JstTraversalNode, seqan::Alloc<> > > >&)' first required here 830 | auto child = *parentPtr; | ^~~~~ @@ -57472,48 +57227,43 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionReference(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]': +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:390:39: required from 'typename seqan::Position > >::Type seqan::position(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:67:28: required from 'void TestHelperHitCollector_::operator()() [with TTraverser = seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:263:17: required from 'decltype (seqan::impl::run(extension._derived, traverser, TCxtPosition()).first) seqan::run(seqan::JstExtensionBase&, const TTraverser&, TDelegate&&) [with TExtension = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TCxtPosition = seqan::Tag; TTraverser = seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; decltype (seqan::impl::run(extension._derived, traverser, TCxtPosition()).first) = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:289:25: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:968:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 968 | auto tmp = impl::baseNode(me).coverage; + | ^~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Packed<> >, seqan::Tag >; TValue = seqan::String, seqan::Packed<> >; typename seqan::Value::Type = seqan::String, seqan::Packed<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::String, seqan::Packed<> >; TValue2 = seqan::String, seqan::Packed<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::String, seqan::Packed<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::String, seqan::Packed<> >; typename seqan::Reference > >::Type = seqan::String, seqan::Packed<> >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:786:21: required from 'typename seqan::Fibre, const seqan::Tag >::Type& seqan::getFibre(seqan::Index&, FibreText) [with TText = seqan::String, seqan::Packed<> >; TSpec = seqan::FMIndex<>; typename seqan::Fibre, const seqan::Tag >::Type = seqan::String, seqan::Packed<> >; seqan::FibreText = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:288:19: required from 'void seqan::clear(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:107:10: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionBranch(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]': +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:392:36: required from 'typename seqan::Position > >::Type seqan::position(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:67:28: required from 'void TestHelperHitCollector_::operator()() [with TTraverser = seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:263:17: required from 'decltype (seqan::impl::run(extension._derived, traverser, TCxtPosition()).first) seqan::run(seqan::JstExtensionBase&, const TTraverser&, TDelegate&&) [with TExtension = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TCxtPosition = seqan::Tag; TTraverser = seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; decltype (seqan::impl::run(extension._derived, traverser, TCxtPosition()).first) = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:289:25: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:999:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 999 | auto tmp = impl::activeNode(me).coverage; + | ^~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:43, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, @@ -57564,21 +57314,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: -In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', - inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' at /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] - 470 | outRef->i2.i[skipped++] = 0; - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 to object 'seqan::Tuple >::i' with size 7 declared here - 141 | typename StoredTupleValue_::Type i[SIZE]; - | ^ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -57627,25 +57362,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry::TDeltaPos, seqan::DeltaMapEntry::TDeltaRecord, const TCoverage&, seqan::DeltaEndType) [with TRefPos = long unsigned int; TStorePos = long unsigned int; seqan::DeltaMapEntry::TDeltaPos = long unsigned int; seqan::DeltaMapEntry::TDeltaRecord = seqan::Pair >; seqan::DeltaMapEntry::TCoverage = seqan::String >]': -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:530:17: required from 'void seqan::impl::insert(seqan::Iter >, TDeltaPos, const TDeltaValue&, const TCoverage&, const DeltaTypeDel&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = int; TCoverage = seqan::String >; seqan::DeltaTypeDel = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(seqan::DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TDeltaPos = int; TDeltaValue = int; TCoverage = seqan::String >; TDeltaType = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(seqan::JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = seqan::String, seqan::Alloc<> >; TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TPos = int; TValue = int; TIds = seqan::String >; TDeltaType = seqan::Tag; typename seqan::EnableIf >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_mock.h:121:15: required from 'static TJst JstMockGenerator::_createSimpleJst() [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:65:60: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_constructor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:115:29: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 115 | deltaTypeEnd(endType) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -57766,31 +57482,56 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Packed<> >, seqan::Tag >; TValue = seqan::String, seqan::Packed<> >; typename seqan::Value::Type = seqan::String, seqan::Packed<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::String, seqan::Packed<> >; TValue2 = seqan::String, seqan::Packed<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::String, seqan::Packed<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::String, seqan::Packed<> >; typename seqan::Reference > >::Type = seqan::String, seqan::Packed<> >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:786:21: required from 'typename seqan::Fibre, const seqan::Tag >::Type& seqan::getFibre(seqan::Index&, FibreText) [with TText = seqan::String, seqan::Packed<> >; TSpec = seqan::FMIndex<>; typename seqan::Fibre, const seqan::Tag >::Type = seqan::String, seqan::Packed<> >; seqan::FibreText = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:288:19: required from 'void seqan::clear(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:107:10: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::InsertValueToString_::insertValue_(T&, TPosition, TValue&) [with T = seqan::String, seqan::Alloc<> >; TPosition = long int; TValue = const seqan::DeltaMapEntry; TExpand = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1410:54: required from 'void seqan::insertValue(seqan::String&, TPosition, const TValue&, seqan::Tag) [with TTargetValue = seqan::DeltaMapEntry; TTargetSpec = seqan::Alloc<>; TPosition = long int; TValue = seqan::DeltaMapEntry; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1010:16: required from 'void seqan::insertValue(T&&, TPosition, TValue&&) [with T = seqan::String, seqan::Alloc<> >&; TPosition = long int; TValue = seqan::DeltaMapEntry]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:506:16: required from 'void seqan::impl::insert(const seqan::Iter >&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TTag&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(seqan::DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TDeltaType = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(seqan::JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = seqan::String, seqan::Alloc<> >; TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TPos = int; TValue = char; TIds = std::vector; TDeltaType = seqan::Tag; typename seqan::EnableIf >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_mock.h:164:15: required from 'static TJst JstMockGenerator::_createComplexJst() [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:82:57: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 86 | class DeltaMapEntry + | ^~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:43, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1396:33: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(const seqan::DeltaMapEntry&)' first required here + 1396 | typename Value::Type temp_copy = _value; //temp copy because resizeSpace could invalidate _value + | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:76, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h: In instantiation of 'void seqan::impl::create(seqan::JstBuffer_&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:17: required from 'bool seqan::create(seqan::JstBuffer_&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:11: required from 'void seqan::init(seqan::JstBuffer_&, TJst&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:9: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:282:9: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 328 | f.setIt = jSetSplitter[jobId]; + | ~~~~~~~~^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >]' + 105 | Iter(Iter const & other_) : + | ^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -57887,6 +57628,28 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'decltype (seqan::bitScanForward(node.coverage)) seqan::impl::selectProxy(const TTraverserNode&, const SelectValidProxy&) [with TTraverserNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; decltype (seqan::bitScanForward(node.coverage)) = long unsigned int; seqan::SelectValidProxy = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:580:38: required from 'bool seqan::impl::createBranch(seqan::TraverserImpl >&, TTraversalNode&, TTraversalNode&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TProxySelection = seqan::SelectValidProxy_]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:831:35: required from 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = long unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = long unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(seqan::TraverserImpl >&, TSize, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TSize = long unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:290:16: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:528:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 528 | auto tmp1 = node.coverage; + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -57983,50 +57746,35 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:76, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h: In instantiation of 'void seqan::impl::create(seqan::JstBuffer_&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:17: required from 'bool seqan::create(seqan::JstBuffer_&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:11: required from 'void seqan::init(seqan::JstBuffer_&, TJst&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:9: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple<>; TProxySelector = seqan::SelectFirstProxy_]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple<>; TProxySelector = seqan::SelectFirstProxy_]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:353:9: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_basic_traversal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:56:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 328 | f.setIt = jSetSplitter[jobId]; - | ~~~~~~~~^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >]' - 105 | Iter(Iter const & other_) : - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::DeltaMapEntry*; TSource1 = seqan::DeltaMapEntry*; TSource2 = seqan::DeltaMapEntry*]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::DeltaMapEntry]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::DeltaMapEntry]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::DeltaMapEntry; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::DeltaMapEntry; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_alloc.h:123:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::DeltaMapEntry; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:110:7: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 86 | class DeltaMapEntry + | ^~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry&&)' first required here + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -58077,26 +57825,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'decltype (seqan::bitScanForward(node.coverage)) seqan::impl::selectProxy(const TTraverserNode&, const SelectValidProxy&) [with TTraverserNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; decltype (seqan::bitScanForward(node.coverage)) = long unsigned int; seqan::SelectValidProxy = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:580:38: required from 'bool seqan::impl::createBranch(seqan::TraverserImpl >&, TTraversalNode&, TTraversalNode&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TProxySelection = seqan::SelectValidProxy_]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:831:35: required from 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(seqan::TraverserImpl >&, TSize, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::SelectValidProxy_]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:506:12: required from 'void seqan::advance(seqan::TraverserImpl >&, TSize) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TSize = int]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:288:16: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_at_end() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:50:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:528:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 528 | auto tmp1 = node.coverage; - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -58147,81 +57875,36 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = seqan::String > >; TObject = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = seqan::String > >; TObject = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:77, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:46, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::JstTraversalNode, seqan::Alloc<> > > >*; TParam = seqan::JstTraversalNode, seqan::Alloc<> > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::JstTraversalNode, seqan::Alloc<> > > >*; TParam = seqan::JstTraversalNode, seqan::Alloc<> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_block.h:402:19: required from 'void seqan::appendValue(seqan::String >&, TValue&&, seqan::Tag) [with TTargetValue = seqan::JstTraversalNode, seqan::Alloc<> > > >; long unsigned int SPACE = 4096; TValue = seqan::JstTraversalNode, seqan::Alloc<> > > >; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::String, seqan::Alloc<> > > >, seqan::Block<> >&; TSource = seqan::JstTraversalNode, seqan::Alloc<> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:175:16: required from 'void seqan::impl::pushNode(seqan::TraverserImpl >&, TTraversalNode&&, TObserver&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:926:19: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>; TProxySelector = seqan::SelectValidProxy_]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:282:9: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&, TObserver&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&; TObserver = std::tuple, seqan::Alloc >, seqan::Tag > > >&>]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/jst_extension_base.h:306:13: required from 'void seqan::find(seqan::TraverserImpl >&, TAlgorithm&, TDelegate&&) [with TContainer = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TAlgorithm = seqan::JstExtension, seqan::Alloc<> >, seqan::Tag > >; TDelegate = TestHelperHitCollector_, seqan::Alloc<> > >, seqan::JstTraversalSpec > >&]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:95:9: required from 'void _testFindJst(seqan::Pattern&, TSize, TSize) [with TNeedle = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.h:119:21: required from 'void SEQAN_TEST_test_journaled_string_tree_find_horspool() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 51 | class JstTraversalNode + | ^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_find.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(seqan::JstTraversalNode, seqan::Alloc<> > > >&&)' first required here + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -58297,27 +57980,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::InsertValueToString_::insertValue_(T&, TPosition, TValue&) [with T = seqan::String, seqan::Alloc<> >; TPosition = long int; TValue = const seqan::DeltaMapEntry; TExpand = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1410:54: required from 'void seqan::insertValue(seqan::String&, TPosition, const TValue&, seqan::Tag) [with TTargetValue = seqan::DeltaMapEntry; TTargetSpec = seqan::Alloc<>; TPosition = long int; TValue = seqan::DeltaMapEntry; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1010:16: required from 'void seqan::insertValue(T&&, TPosition, TValue&&) [with T = seqan::String, seqan::Alloc<> >&; TPosition = long int; TValue = seqan::DeltaMapEntry]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:529:16: required from 'void seqan::impl::insert(seqan::Iter >, TDeltaPos, const TDeltaValue&, const TCoverage&, const DeltaTypeDel&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = int; TCoverage = seqan::String >; seqan::DeltaTypeDel = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(seqan::DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TDeltaPos = int; TDeltaValue = int; TCoverage = seqan::String >; TDeltaType = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(seqan::JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = seqan::String, seqan::Alloc<> >; TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TPos = int; TValue = int; TIds = seqan::String >; TDeltaType = seqan::Tag; typename seqan::EnableIf >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_mock.h:121:15: required from 'static TJst JstMockGenerator::_createSimpleJst() [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:65:60: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_constructor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 86 | class DeltaMapEntry - | ^~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -58343,64 +58005,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1396:33: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(const seqan::DeltaMapEntry&)' first required here - 1396 | typename Value::Type temp_copy = _value; //temp copy because resizeSpace could invalidate _value - | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = seqan::String > >; TObject = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:77, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::JstTraversalNode, seqan::Alloc<> > > >*; TParam = seqan::JstTraversalNode, seqan::Alloc<> > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::JstTraversalNode, seqan::Alloc<> > > >*; TParam = seqan::JstTraversalNode, seqan::Alloc<> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_block.h:402:19: required from 'void seqan::appendValue(seqan::String >&, TValue&&, seqan::Tag) [with TTargetValue = seqan::JstTraversalNode, seqan::Alloc<> > > >; long unsigned int SPACE = 4096; TValue = seqan::JstTraversalNode, seqan::Alloc<> > > >; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::String, seqan::Alloc<> > > >, seqan::Block<> >&; TSource = seqan::JstTraversalNode, seqan::Alloc<> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:175:16: required from 'void seqan::impl::pushNode(seqan::TraverserImpl >&, TTraversalNode&&, TObserver&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TObserver = std::tuple<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:926:19: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple<>; TProxySelector = seqan::SelectFirstProxy_]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple<>; TProxySelector = seqan::SelectFirstProxy_]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:353:9: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_basic_traversal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:56:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 51 | class JstTraversalNode - | ^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(seqan::JstTraversalNode, seqan::Alloc<> > > >&&)' first required here - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -58451,34 +58055,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::DeltaMapEntry*; TSource1 = seqan::DeltaMapEntry*; TSource2 = seqan::DeltaMapEntry*]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::DeltaMapEntry]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::DeltaMapEntry]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::DeltaMapEntry; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::DeltaMapEntry; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_alloc.h:123:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::DeltaMapEntry; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:110:7: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_constructor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 86 | class DeltaMapEntry - | ^~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry&&)' first required here - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -58654,136 +58230,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -58834,448 +58280,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: @@ -59327,276 +58331,6 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 311 | buffer[pool.handlerArgs(Val_)] = Val_; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 517 | *cb.cur = item; - | ~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 311 | buffer[pool.handlerArgs(Val_)] = Val_; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 517 | *cb.cur = item; - | ~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 311 | buffer[pool.handlerArgs(Val_)] = Val_; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 517 | *cb.cur = item; - | ~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 311 | buffer[pool.handlerArgs(Val_)] = Val_; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 517 | *cb.cur = item; - | ~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 311 | buffer[pool.handlerArgs(Val_)] = Val_; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 517 | *cb.cur = item; - | ~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' @@ -59791,34 +58525,1485 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:79, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h: In instantiation of 'void SEQAN_TEST_test_journaled_string_tree_traverser_constructor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:50:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 50 | class TraverserImpl > + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:101:20: note: synthesized method 'seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >::TraverserImpl(const seqan::TraverserImpl, seqan::Alloc<> > >, seqan::JstTraversalSpec >&)' first required here + 101 | TTraverser travCopy(traverser); + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 202 | *refNext = *I; + | ~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 203 | *I = *refPrev; + | ~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 243 | *cur = *refPrev; + | ~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:79, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h: In instantiation of 'seqan::TraverserImpl >::TraverserImpl(seqan::TraverserImpl >&&, typename seqan::EnableIf >::Type*) [with TOtherJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::EnableIf >::Type = void]': +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:119:20: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_constructor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:134:65: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 134 | _needInitialization(std::move(other._needInitialization)) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 202 | *refNext = *I; + | ~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 203 | *I = *refPrev; + | ~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 243 | *cur = *refPrev; + | ~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionReference(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]': +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:390:39: required from 'typename seqan::Position > >::Type seqan::position(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:357:36: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_basic_traversal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:56:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:968:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 968 | auto tmp = impl::baseNode(me).coverage; + | ^~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'typename seqan::Position > >::Type seqan::impl::positionBranch(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]': +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:392:36: required from 'typename seqan::Position > >::Type seqan::position(const seqan::TraverserImpl >&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; typename seqan::Position > >::Type = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:357:36: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_basic_traversal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:56:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:999:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 999 | auto tmp = impl::activeNode(me).coverage; + | ^~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:48, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Packed<> >, seqan::Tag >; TValue = seqan::String, seqan::Packed<> >; typename seqan::Value::Type = seqan::String, seqan::Packed<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::String, seqan::Packed<> >; TValue2 = seqan::String, seqan::Packed<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::String, seqan::Packed<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::String, seqan::Packed<> >; typename seqan::Reference > >::Type = seqan::String, seqan::Packed<> >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:786:21: required from 'typename seqan::Fibre, const seqan::Tag >::Type& seqan::getFibre(seqan::Index&, FibreText) [with TText = seqan::String, seqan::Packed<> >; TSpec = seqan::FMIndex<>; typename seqan::Fibre, const seqan::Tag >::Type = seqan::String, seqan::Packed<> >; seqan::FibreText = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:288:19: required from 'void seqan::clear(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:107:10: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:43, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Packed<> >, seqan::Tag >; TValue = seqan::String, seqan::Packed<> >; typename seqan::Value::Type = seqan::String, seqan::Packed<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::String, seqan::Packed<> >; TValue2 = seqan::String, seqan::Packed<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::String, seqan::Packed<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::String, seqan::Packed<> >; typename seqan::Reference > >::Type = seqan::String, seqan::Packed<> >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_base.h:786:21: required from 'typename seqan::Fibre, const seqan::Tag >::Type& seqan::getFibre(seqan::Index&, FibreText) [with TText = seqan::String, seqan::Packed<> >; TSpec = seqan::FMIndex<>; typename seqan::Fibre, const seqan::Tag >::Type = seqan::String, seqan::Packed<> >; seqan::FibreText = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:288:19: required from 'void seqan::clear(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:107:10: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:43, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_set.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:48, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = seqan::String > >; TObject = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:77, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(seqan::TraverserImpl >&, TSize, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::SelectValidProxy_]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:506:12: required from 'void seqan::advance(seqan::TraverserImpl >&, TSize) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TSize = int]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:288:16: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_at_end() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:50:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 51 | class JstTraversalNode + | ^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:830:18: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(const seqan::JstTraversalNode, seqan::Alloc<> > > >&)' first required here + 830 | auto child = *parentPtr; + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = seqan::String > >; TObject = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = seqan::String > >; TObject = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry::TDeltaPos, seqan::DeltaMapEntry::TDeltaRecord, const TCoverage&, seqan::DeltaEndType) [with TRefPos = long unsigned int; TStorePos = long unsigned int; seqan::DeltaMapEntry::TDeltaPos = long unsigned int; seqan::DeltaMapEntry::TDeltaRecord = seqan::Pair >; seqan::DeltaMapEntry::TCoverage = seqan::String >]': +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:530:17: required from 'void seqan::impl::insert(seqan::Iter >, TDeltaPos, const TDeltaValue&, const TCoverage&, const DeltaTypeDel&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = int; TCoverage = seqan::String >; seqan::DeltaTypeDel = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(seqan::DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TDeltaPos = int; TDeltaValue = int; TCoverage = seqan::String >; TDeltaType = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(seqan::JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = seqan::String, seqan::Alloc<> >; TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TPos = int; TValue = int; TIds = seqan::String >; TDeltaType = seqan::Tag; typename seqan::EnableIf >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_mock.h:121:15: required from 'static TJst JstMockGenerator::_createSimpleJst() [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:65:60: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_constructor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:115:29: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 115 | deltaTypeEnd(endType) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:37: +In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', + inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' at /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] + 470 | outRef->i2.i[skipped++] = 0; + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_finder.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 to object 'seqan::Tuple >::i' with size 7 declared here + 141 | typename StoredTupleValue_::Type i[SIZE]; + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:76, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h: In instantiation of 'void seqan::impl::create(seqan::JstBuffer_&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:503:17: required from 'bool seqan::create(seqan::JstBuffer_&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:556:11: required from 'void seqan::init(seqan::JstBuffer_&, TJst&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:902:9: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple<>; TProxySelector = seqan::SelectFirstProxy_]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple<>; TProxySelector = seqan::SelectFirstProxy_]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:353:9: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_basic_traversal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:56:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h:328:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 328 | f.setIt = jSetSplitter[jobId]; + | ~~~~~~~~^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'decltype (seqan::bitScanForward(node.coverage)) seqan::impl::selectProxy(const TTraverserNode&, const SelectValidProxy&) [with TTraverserNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; decltype (seqan::bitScanForward(node.coverage)) = long unsigned int; seqan::SelectValidProxy = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:580:38: required from 'bool seqan::impl::createBranch(seqan::TraverserImpl >&, TTraversalNode&, TTraversalNode&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TProxySelection = seqan::SelectValidProxy_]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:831:35: required from 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:869:36: required from 'TSize seqan::impl::moveWindow(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:451:32: required from 'void seqan::advance(seqan::TraverserImpl >&, TSize, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TSize = int; TObserver = std::tuple<>; TProxySelector = seqan::SelectValidProxy_]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:506:12: required from 'void seqan::advance(seqan::TraverserImpl >&, TSize) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TSize = int]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:288:16: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_at_end() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:50:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:528:10: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 528 | auto tmp1 = node.coverage; + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::InsertValueToString_::insertValue_(T&, TPosition, TValue&) [with T = seqan::String, seqan::Alloc<> >; TPosition = long int; TValue = const seqan::DeltaMapEntry; TExpand = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1410:54: required from 'void seqan::insertValue(seqan::String&, TPosition, const TValue&, seqan::Tag) [with TTargetValue = seqan::DeltaMapEntry; TTargetSpec = seqan::Alloc<>; TPosition = long int; TValue = seqan::DeltaMapEntry; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1010:16: required from 'void seqan::insertValue(T&&, TPosition, TValue&&) [with T = seqan::String, seqan::Alloc<> >&; TPosition = long int; TValue = seqan::DeltaMapEntry]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:529:16: required from 'void seqan::impl::insert(seqan::Iter >, TDeltaPos, const TDeltaValue&, const TCoverage&, const DeltaTypeDel&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = int; TCoverage = seqan::String >; seqan::DeltaTypeDel = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(seqan::DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TDeltaPos = int; TDeltaValue = int; TCoverage = seqan::String >; TDeltaType = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(seqan::JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = seqan::String, seqan::Alloc<> >; TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TPos = int; TValue = int; TIds = seqan::String >; TDeltaType = seqan::Tag; typename seqan::EnableIf >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_mock.h:121:15: required from 'static TJst JstMockGenerator::_createSimpleJst() [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:65:60: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_constructor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 86 | class DeltaMapEntry + | ^~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1396:33: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(const seqan::DeltaMapEntry&)' first required here + 1396 | typename Value::Type temp_copy = _value; //temp copy because resizeSpace could invalidate _value + | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:77, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::JstTraversalNode, seqan::Alloc<> > > >*; TParam = seqan::JstTraversalNode, seqan::Alloc<> > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::JstTraversalNode, seqan::Alloc<> > > >*; TParam = seqan::JstTraversalNode, seqan::Alloc<> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_block.h:402:19: required from 'void seqan::appendValue(seqan::String >&, TValue&&, seqan::Tag) [with TTargetValue = seqan::JstTraversalNode, seqan::Alloc<> > > >; long unsigned int SPACE = 4096; TValue = seqan::JstTraversalNode, seqan::Alloc<> > > >; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::String, seqan::Alloc<> > > >, seqan::Block<> >&; TSource = seqan::JstTraversalNode, seqan::Alloc<> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:175:16: required from 'void seqan::impl::pushNode(seqan::TraverserImpl >&, TTraversalNode&&, TObserver&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TObserver = std::tuple<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h:926:19: required from 'void seqan::impl::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple<>; TProxySelector = seqan::SelectFirstProxy_]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser.h:407:15: required from 'void seqan::init(seqan::TraverserImpl >&, TObserver&, const seqan::Tag&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TObserver = std::tuple<>; TProxySelector = seqan::SelectFirstProxy_]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:353:9: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_basic_traversal() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:56:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h:51:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 51 | class JstTraversalNode + | ^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::JstTraversalNode, seqan::Alloc<> > > >::JstTraversalNode(seqan::JstTraversalNode, seqan::Alloc<> > > >&&)' first required here + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.h:43, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::DeltaMapEntry*; TSource1 = seqan::DeltaMapEntry*; TSource2 = seqan::DeltaMapEntry*]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::DeltaMapEntry]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::DeltaMapEntry]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::DeltaMapEntry; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::DeltaMapEntry; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_alloc.h:123:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::DeltaMapEntry; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:110:7: required from 'void SEQAN_TEST_test_journaled_string_tree_traverser_constructor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:45:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 86 | class DeltaMapEntry + | ^~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree_traverser.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry&&)' first required here + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 311 | buffer[pool.handlerArgs(Val_)] = Val_; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 517 | *cb.cur = item; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 311 | buffer[pool.handlerArgs(Val_)] = Val_; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 517 | *cb.cur = item; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 311 | buffer[pool.handlerArgs(Val_)] = Val_; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 517 | *cb.cur = item; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 311 | buffer[pool.handlerArgs(Val_)] = Val_; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 517 | *cb.cur = item; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 311 | buffer[pool.handlerArgs(Val_)] = Val_; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Packed<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String, seqan::Packed<> >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index, seqan::Packed<> >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 517 | *cb.cur = item; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +[ 17%] Linking CXX executable ../../bin/test_journaled_set +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_journaled_set.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o -o ../../bin/test_journaled_set -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 17%] Built target test_journaled_set +make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/depend.internal". +Scanning dependencies of target test_delta_map +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 17%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_delta_map.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void; TConfig = seqan::FMIndexConfig]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:103:16: required from 'void IndexTest__OpenSave::runTest() [with SEQAN_TParam = seqan::Index > >, seqan::FMIndex<> >]' +/build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:101:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: @@ -59928,55 +60113,6 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 202 | *refNext = *I; - | ~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 203 | *I = *refPrev; - | ~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 243 | *cur = *refPrev; - | ~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': @@ -60031,55 +60167,6 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String > >; TText = seqan::String >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:469:23: required from 'bool seqan::indexCreate(seqan::Index >&) [with TText = seqan::String >; TSpec = void; TConfig = PrefixLVFMIndexConfig<>]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:714:20: required from 'void FibreTest::setUp() [with TIndex = seqan::Index >, seqan::FMIndex > >; TFibreTag = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:709:10: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 202 | *refNext = *I; - | ~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 203 | *I = *refPrev; - | ~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 243 | *cur = *refPrev; - | ~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': @@ -60132,9 +60219,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 17%] Linking CXX executable ../../bin/test_journaled_set -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_journaled_set.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_journaled_set.dir/test_journaled_set.cpp.o -o ../../bin/test_journaled_set -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, @@ -60190,13 +60274,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 17%] Built target test_journaled_set -make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, @@ -60252,12 +60329,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -Scanning dependencies of target test_delta_map -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 17%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_delta_map.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:44, @@ -60703,12 +60774,12 @@ make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 18%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/test_journaled_string_tree.cpp.o +[ 18%] Linking CXX executable ../../bin/test_index_bifm cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_journaled_string_tree.dir/test_journaled_string_tree.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp -[ 18%] Linking CXX executable ../../bin/test_journaled_string_tree_find -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_journaled_string_tree_find.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o -o ../../bin/test_journaled_string_tree_find -lrt -lz -lbz2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_bifm.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_bifm.dir/test_index_bifm.cpp.o -o ../../bin/test_index_bifm -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 18%] Built target test_journaled_string_tree_find +[ 18%] Built target test_index_bifm make -f tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build.make tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/DependInfo.cmake --color= @@ -60720,11 +60791,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 18%] Building CXX object tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/test_basic_observable.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_basic_observable.dir/test_basic_observable.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_basic_observable.cpp -[ 18%] Linking CXX executable ../../bin/test_index_bifm -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_bifm.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_bifm.dir/test_index_bifm.cpp.o -o ../../bin/test_index_bifm -lrt -lz -lbz2 +[ 18%] Linking CXX executable ../../bin/test_journaled_string_tree_find +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_journaled_string_tree_find.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_journaled_string_tree_find.dir/test_journaled_string_tree_find.cpp.o -o ../../bin/test_journaled_string_tree_find -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 18%] Built target test_index_bifm +[ 18%] Built target test_journaled_string_tree_find make -f tests/map/CMakeFiles/test_map.dir/build.make tests/map/CMakeFiles/test_map.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/map /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/map /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/map/CMakeFiles/test_map.dir/DependInfo.cmake --color= @@ -60736,6 +60807,22 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 18%] Building CXX object tests/map/CMakeFiles/test_map.dir/test_map.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/map && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_map.dir/test_map.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/map/test_map.cpp +[ 18%] Linking CXX executable ../../bin/test_delta_map +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_delta_map.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o -o ../../bin/test_delta_map -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 18%] Built target test_delta_map +make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/misc /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc/CMakeFiles/test_misc.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc/CMakeFiles/test_misc.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc/CMakeFiles/test_misc.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc/CMakeFiles/test_misc.dir/depend.internal". +Scanning dependencies of target test_misc +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 18%] Building CXX object tests/misc/CMakeFiles/test_misc.dir/test_misc.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_misc.dir/test_misc.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.h:41, from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:38: @@ -60827,76 +60914,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.h:41, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::InsertValueToString_::insertValue_(T&, TPosition, TValue&) [with T = seqan::String, seqan::Alloc<> >; TPosition = long int; TValue = const seqan::DeltaMapEntry; TExpand = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1410:54: required from 'void seqan::insertValue(seqan::String&, TPosition, const TValue&, seqan::Tag) [with TTargetValue = seqan::DeltaMapEntry; TTargetSpec = seqan::Alloc<>; TPosition = long int; TValue = seqan::DeltaMapEntry; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1010:16: required from 'void seqan::insertValue(T&&, TPosition, TValue&&) [with T = seqan::String, seqan::Alloc<> >&; TPosition = long int; TValue = seqan::DeltaMapEntry]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:506:16: required from 'void seqan::impl::insert(const seqan::Iter >&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TTag&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(seqan::DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TDeltaType = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(seqan::JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = seqan::String, seqan::Alloc<> >; TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TPos = int; TValue = char; TIds = seqan::String >; TDeltaType = seqan::Tag; typename seqan::EnableIf >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.h:142:11: required from 'void SEQAN_TEST_test_journaled_string_tree_insert() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:47:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 86 | class DeltaMapEntry - | ^~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1396:33: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(const seqan::DeltaMapEntry&)' first required here - 1396 | typename Value::Type temp_copy = _value; //temp copy because resizeSpace could invalidate _value - | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.h:41, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::DeltaMapEntry*; TSource1 = seqan::DeltaMapEntry*; TSource2 = seqan::DeltaMapEntry*]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::DeltaMapEntry]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::DeltaMapEntry]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::DeltaMapEntry; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::DeltaMapEntry; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_alloc.h:123:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::DeltaMapEntry; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:110:7: required from 'void SEQAN_TEST_test_journaled_string_tree_host() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 86 | class DeltaMapEntry - | ^~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry&&)' first required here - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 18%] Linking CXX executable ../../bin/test_delta_map -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_delta_map.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_delta_map.dir/test_delta_map.cpp.o -o ../../bin/test_delta_map -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 18%] Built target test_delta_map -make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/misc /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc/CMakeFiles/test_misc.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc/CMakeFiles/test_misc.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc/CMakeFiles/test_misc.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc/CMakeFiles/test_misc.dir/depend.internal". -Scanning dependencies of target test_misc -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 18%] Building CXX object tests/misc/CMakeFiles/test_misc.dir/test_misc.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_misc.dir/test_misc.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -60927,6 +60944,32 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.h:41, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::InsertValueToString_::insertValue_(T&, TPosition, TValue&) [with T = seqan::String, seqan::Alloc<> >; TPosition = long int; TValue = const seqan::DeltaMapEntry; TExpand = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1410:54: required from 'void seqan::insertValue(seqan::String&, TPosition, const TValue&, seqan::Tag) [with TTargetValue = seqan::DeltaMapEntry; TTargetSpec = seqan::Alloc<>; TPosition = long int; TValue = seqan::DeltaMapEntry; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:1010:16: required from 'void seqan::insertValue(T&&, TPosition, TValue&&) [with T = seqan::String, seqan::Alloc<> >&; TPosition = long int; TValue = seqan::DeltaMapEntry]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:506:16: required from 'void seqan::impl::insert(const seqan::Iter >&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TTag&) [with TDeltaMap = seqan::DeltaMap, seqan::Alloc<> > >, seqan::Tag >; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:798:17: required from 'void seqan::insert(seqan::DeltaMap&, TDeltaPos, const TDeltaValue&, const TCoverage&, const TDeltaType&) [with TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TDeltaPos = int; TDeltaValue = char; TCoverage = seqan::String >; TDeltaType = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_impl.h:619:11: required from 'typename seqan::EnableIf >, void>::Type seqan::insert(seqan::JournaledStringTree&, TPos, const TValue&, const TIds&, TDeltaType) [with TSequence = seqan::String, seqan::Alloc<> >; TConfig = seqan::DefaultJstConfig, seqan::Alloc<> > >; TSpec = seqan::Tag; TPos = int; TValue = char; TIds = seqan::String >; TDeltaType = seqan::Tag; typename seqan::EnableIf >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.h:142:11: required from 'void SEQAN_TEST_test_journaled_string_tree_insert() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:47:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 86 | class DeltaMapEntry + | ^~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1396:33: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(const seqan::DeltaMapEntry&)' first required here + 1396 | typename Value::Type temp_copy = _value; //temp copy because resizeSpace could invalidate _value + | ^~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -60979,9 +61022,44 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -[ 18%] Linking CXX executable ../../bin/test_index_finder -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_finder.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o -o ../../bin/test_index_finder -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:61, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.h:41, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::DeltaMapEntry*; TParam = seqan::DeltaMapEntry]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:511:23: required from 'void seqan::_arrayConstructMoveDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::DeltaMapEntry*; TSource1 = seqan::DeltaMapEntry*; TSource2 = seqan::DeltaMapEntry*]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1055:31: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::False) [with TValue = seqan::DeltaMapEntry]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:1064:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::DeltaMapEntry]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1683:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::DeltaMapEntry; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1697:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::DeltaMapEntry; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_alloc.h:123:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::DeltaMapEntry; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map.h:110:7: required from 'void SEQAN_TEST_test_journaled_string_tree_host() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/delta_map_entry.h:86:7: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 86 | class DeltaMapEntry + | ^~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree/test_journaled_string_tree.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry&&)' first required here + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 18%] Linking CXX executable ../../bin/test_basic_observable +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_observable.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_observable.dir/test_basic_observable.cpp.o -o ../../bin/test_basic_observable -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 18%] Built target test_basic_observable +make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/modifier /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier/CMakeFiles/test_modifier.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier/CMakeFiles/test_modifier.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier/CMakeFiles/test_modifier.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier/CMakeFiles/test_modifier.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp:50: /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = double]': /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TValue = int; TCargo = double]' @@ -61011,6 +61089,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ +Scanning dependencies of target test_modifier +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp:50: /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TValue = int; TCargo = int]': /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1502:18: required from 'void seqan::findIntervals(seqan::String&, const seqan::IntervalTree&, TValue2) [with TValue = int; TCargo = int; TValue2 = int]' @@ -61032,6 +61114,7 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ +[ 18%] Building CXX object tests/modifier/CMakeFiles/test_modifier.dir/test_modifier.cpp.o In file included from /build/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp:50: /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1475:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1475 | next_prop = property(pm, targetVertex(it)); @@ -61040,6 +61123,7 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_modifier.dir/test_modifier.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp In file included from /build/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp:50: /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::addInterval(TGraph&, TPropertyMap&, TInterval) [with TGraph = seqan::Graph > >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TInterval = seqan::IntervalAndCargo]': /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1363:16: required from 'void seqan::addInterval(seqan::IntervalTree&, TInterval) [with TValue = int; TCargo = int; TInterval = seqan::IntervalAndCargo]' @@ -61098,25 +61182,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ -[ 18%] Linking CXX executable ../../bin/test_basic_observable -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_observable.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_basic_observable.dir/test_basic_observable.cpp.o -o ../../bin/test_basic_observable -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 18%] Built target test_index_finder -make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/modifier /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier/CMakeFiles/test_modifier.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier/CMakeFiles/test_modifier.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier/CMakeFiles/test_modifier.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier/CMakeFiles/test_modifier.dir/depend.internal". -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -Scanning dependencies of target test_modifier -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/build -[ 18%] Built target test_basic_observable -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build.make tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp:50: /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = int]': /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TValue = int; TCargo = int]' @@ -61131,7 +61196,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ -[ 18%] Building CXX object tests/modifier/CMakeFiles/test_modifier.dir/test_modifier.cpp.o In file included from /build/seqan2-2.4.0+dfsg/tests/misc/test_misc.cpp:50: /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1575 | next_prop = property(pm, targetVertex(it)); @@ -61148,7 +61212,14 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_modifier.dir/test_modifier.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp +[ 18%] Linking CXX executable ../../bin/test_index_finder +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_finder.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_finder.dir/test_index_finder.cpp.o -o ../../bin/test_index_finder -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 18%] Built target test_index_finder +make -f tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build.make tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/depend.internal". Scanning dependencies of target test_modifier_cyclic_shape @@ -61157,29 +61228,9 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 18%] Building CXX object tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/test_modifier_cyclic_shape.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_modifier_cyclic_shape.dir/test_modifier_cyclic_shape.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp -In file included from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h: In instantiation of 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]': -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:195:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_infix_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:47:5: required from here -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:52:13: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 52 | TModStr modStr(str, shape); - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:78, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:214:53: note: initializing argument 1 of 'seqan::ModifiedString > >::ModifiedString(typename seqan::Parameter_::Type, const TCyclicShape&) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>; seqan::ModifiedString > >::TCyclicShape = seqan::CyclicShape > >]' - 214 | ModifiedString(typename Parameter_::Type host, TCyclicShape const & shape) : - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 18%] Linking CXX executable ../../bin/test_map +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/map && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_map.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_map.dir/test_map.cpp.o -o ../../bin/test_map -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:40: /build/seqan2-2.4.0+dfsg/tests/modifier/test_modifier_string.h: In instantiation of 'void SEQAN_TEST_test_modifier_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/seqan2-2.4.0+dfsg/tests/modifier/test_modifier.cpp:105:5: required from here @@ -61278,336 +61329,13 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:215:25: required from 'seqan::ModifiedString > >::ModifiedString(typename seqan::Parameter_::Type, const TCyclicShape&) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>; seqan::ModifiedString > >::TCyclicShape = seqan::CyclicShape > >]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:52:13: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:195:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_infix_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:47:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator > > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape > > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator > > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::String >; TSpec = seqan::GappedShape >; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator > > > >]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:128:32: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_iterator() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:57:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] - 452 | cargo(me) = cargo(_origin); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' - 203 | CyclicShape(CyclicShape const & other) : - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape > > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape > > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape > > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::String >; TSpec = seqan::GappedShape >; TTagSpec = seqan::Rooted_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape > > > >]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:129:32: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_iterator() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:57:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] - 452 | cargo(me) = cargo(_origin); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' - 203 | CyclicShape(CyclicShape const & other) : - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator > > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape > > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator > > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString > >&, seqan::Tag) [with THost = const seqan::String >; TSpec = seqan::GappedShape >; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator > > > >]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:56:21: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = const seqan::String >; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:175:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_alloc_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:45:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] - 452 | cargo(me) = cargo(_origin); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' - 203 | CyclicShape(CyclicShape const & other) : - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::Tag >, seqan::ModCyclicShape > > > >; TSource = seqan::ModifiedString >, seqan::Tag >, seqan::ModCyclicShape > > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::Tag >, seqan::ModCyclicShape > > > >; TSource = seqan::ModifiedString >, seqan::Tag >, seqan::ModCyclicShape > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::ModifiedString >, seqan::Tag >; TSpec = seqan::GappedShape >; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::Tag >, seqan::ModCyclicShape > > > >]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:56:21: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::ModifiedString >, seqan::Tag >; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:185:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_mod_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] - 452 | cargo(me) = cargo(_origin); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' - 203 | CyclicShape(CyclicShape const & other) : - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator > > > >; TSource = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModCyclicShape > > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator > > > >; TSource = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModCyclicShape > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator > > > >]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:56:21: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:195:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_infix_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:47:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] - 452 | cargo(me) = cargo(_origin); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' - 203 | CyclicShape(CyclicShape const & other) : - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator >, 1> > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape >, 1> > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator >, 1> > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape >, 1> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString > >&, seqan::Tag) [with THost = const seqan::String >; TSpec = seqan::FixedShape<2, seqan::GappedShape >, 1>; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator >, 1> > > >]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:56:21: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = const seqan::String >; TSpec = seqan::FixedShape<2, seqan::GappedShape >, 1>; typename seqan::Value::Type = char]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:208:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_fixed_alloc_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:49:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 1> >& seqan::CyclicShape >, 1> >::operator=(const seqan::CyclicShape >, 1> >&)' is deprecated [-Wdeprecated-copy] - 452 | cargo(me) = cargo(_origin); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 1> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 2; unsigned int RightOffset = 1; int P00 = 1; int P01 = 2; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' - 288 | CyclicShape(CyclicShape const &) - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator > > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape > > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator > > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:427:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(const seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::String >; TSpec = seqan::GappedShape >; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:689:15: required from 'typename seqan::Size > >::Type seqan::length(const seqan::ModifiedString >&) [with THost = seqan::String >; TSpec = seqan::CyclicShape > >; typename seqan::Size > >::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:107:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_functions() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:56:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] - 452 | cargo(me) = cargo(_origin); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' - 203 | CyclicShape(CyclicShape const & other) : - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_interface.h:387:15: required from 'void seqan::goBegin(TIterator&, TContainer&) [with TIterator = const char*; TContainer = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:530:12: required from 'void seqan::goEnd(seqan::ModifiedIterator > >&, TContainer&) [with THost = const char*; TSpec = seqan::GappedShape >; TContainer = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModCyclicShape > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:441:10: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator > > > >]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:57:22: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:195:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_infix_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:47:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_interface.h:387:15: required from 'void seqan::goBegin(TIterator&, TContainer&) [with TIterator = const char*; TContainer = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:530:12: required from 'void seqan::goEnd(seqan::ModifiedIterator > >&, TContainer&) [with THost = const char*; TSpec = seqan::GappedShape >; TContainer = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModCyclicShape > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:441:10: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator > > > >]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:57:22: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:195:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_infix_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:47:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 343 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:371:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(const seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::String >; TSpec = seqan::FixedShape<1, seqan::GappedShape >, 0>; TTagSpec = seqan::Rooted_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::ModifiedString&) [with TStream = std::basic_ostream; THost = seqan::String >; TSpec = seqan::ModCyclicShape >, 0> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:89:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:55:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 0> >& seqan::CyclicShape >, 0> >::operator=(const seqan::CyclicShape >, 0> >&)' is deprecated [-Wdeprecated-copy] - 452 | cargo(me) = cargo(_origin); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 0> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 1; unsigned int RightOffset = 0; int P00 = 1; int P01 = 0; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' - 288 | CyclicShape(CyclicShape const &) - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:427:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(const seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::String >; TSpec = seqan::FixedShape<1, seqan::GappedShape >, 0>; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator >, 0> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:689:15: required from 'typename seqan::Size > >::Type seqan::length(const seqan::ModifiedString >&) [with THost = seqan::String >; TSpec = seqan::CyclicShape >, 0> >; typename seqan::Size > >::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1086:31: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::ModifiedString&) [with TStream = std::basic_ostream; THost = seqan::String >; TSpec = seqan::ModCyclicShape >, 0> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:89:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:55:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 0> >& seqan::CyclicShape >, 0> >::operator=(const seqan::CyclicShape >, 0> >&)' is deprecated [-Wdeprecated-copy] - 452 | cargo(me) = cargo(_origin); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 0> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 1; unsigned int RightOffset = 0; int P00 = 1; int P01 = 0; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' - 288 | CyclicShape(CyclicShape const &) - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:371:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(const seqan::ModifiedString > >&, seqan::Tag) [with THost = const seqan::String >; TSpec = seqan::FixedShape<1, seqan::GappedShape >, 0>; TTagSpec = seqan::Rooted_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::ModifiedString&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::ModCyclicShape >, 0> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:92:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:55:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 0> >& seqan::CyclicShape >, 0> >::operator=(const seqan::CyclicShape >, 0> >&)' is deprecated [-Wdeprecated-copy] - 452 | cargo(me) = cargo(_origin); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 0> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 1; unsigned int RightOffset = 0; int P00 = 1; int P01 = 0; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' - 288 | CyclicShape(CyclicShape const &) - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:427:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(const seqan::ModifiedString > >&, seqan::Tag) [with THost = const seqan::String >; TSpec = seqan::FixedShape<1, seqan::GappedShape >, 0>; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator >, 0> > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:689:15: required from 'typename seqan::Size > >::Type seqan::length(const seqan::ModifiedString >&) [with THost = const seqan::String >; TSpec = seqan::CyclicShape >, 0> >; typename seqan::Size > >::Type = long unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1086:31: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::ModifiedString&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::ModCyclicShape >, 0> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:92:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:55:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 0> >& seqan::CyclicShape >, 0> >::operator=(const seqan::CyclicShape >, 0> >&)' is deprecated [-Wdeprecated-copy] - 452 | cargo(me) = cargo(_origin); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, - from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 0> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 1; unsigned int RightOffset = 0; int P00 = 1; int P01 = 0; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' - 288 | CyclicShape(CyclicShape const &) - | ^~~~~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 18%] Built target test_map +make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/multiple_translation_units /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -61668,6 +61396,9 @@ /build/seqan2-2.4.0+dfsg/tests/modifier/helpers.h:48:5: note: because 'CaesarChiffre' has user-provided 'CaesarChiffre::CaesarChiffre(const CaesarChiffre&) [with TArgChar = char; TResultChar = char]' 48 | CaesarChiffre(CaesarChiffre const &other) : _delta(other._delta) {} | ^~~~~~~~~~~~~ +Scanning dependencies of target test_multiple_translation_units +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -61713,6 +61444,9 @@ /build/seqan2-2.4.0+dfsg/tests/modifier/helpers.h:48:5: note: because 'CaesarChiffre' has user-provided 'CaesarChiffre::CaesarChiffre(const CaesarChiffre&) [with TArgChar = char; TResultChar = char]' 48 | CaesarChiffre(CaesarChiffre const &other) : _delta(other._delta) {} | ^~~~~~~~~~~~~ +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 18%] Building CXX object tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -61916,9 +61650,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 18%] Linking CXX executable ../../bin/test_journaled_string_tree -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_journaled_string_tree.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_journaled_string_tree.dir/test_journaled_string_tree.cpp.o -o ../../bin/test_journaled_string_tree -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:61, @@ -61940,29 +61671,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 18%] Built target test_journaled_string_tree -make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/multiple_translation_units /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/depend.internal". -[ 18%] Linking CXX executable ../../bin/test_map -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/map && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_map.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_map.dir/test_map.cpp.o -o ../../bin/test_map -lrt -lz -lbz2 -Scanning dependencies of target test_multiple_translation_units -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 18%] Building CXX object tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_multiple_translation_units.dir/test_multiple_translation_units.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 18%] Built target test_map -make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_smart_pointer.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_allocator.h:46, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:74, @@ -61987,12 +61695,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -Scanning dependencies of target test_parallel -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 19%] Building CXX object tests/parallel/CMakeFiles/test_parallel.dir/test_parallel.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_parallel.dir/test_parallel.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/parallel/test_parallel.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -62056,22 +61758,375 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -[ 19%] Linking CXX executable ../../bin/test_modifier_cyclic_shape -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_modifier_cyclic_shape.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_modifier_cyclic_shape.dir/test_modifier_cyclic_shape.cpp.o -o ../../bin/test_modifier_cyclic_shape -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h: In instantiation of 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]': +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:195:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_infix_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:47:5: required from here +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:52:13: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 52 | TModStr modStr(str, shape); + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:78, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:214:53: note: initializing argument 1 of 'seqan::ModifiedString > >::ModifiedString(typename seqan::Parameter_::Type, const TCyclicShape&) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>; seqan::ModifiedString > >::TCyclicShape = seqan::CyclicShape > >]' + 214 | ModifiedString(typename Parameter_::Type host, TCyclicShape const & shape) : + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:215:25: required from 'seqan::ModifiedString > >::ModifiedString(typename seqan::Parameter_::Type, const TCyclicShape&) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>; seqan::ModifiedString > >::TCyclicShape = seqan::CyclicShape > >]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:52:13: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:195:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_infix_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:47:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator > > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape > > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator > > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::String >; TSpec = seqan::GappedShape >; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator > > > >]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:128:32: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_iterator() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:57:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] + 452 | cargo(me) = cargo(_origin); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' + 203 | CyclicShape(CyclicShape const & other) : + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape > > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape > > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape > > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::String >; TSpec = seqan::GappedShape >; TTagSpec = seqan::Rooted_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape > > > >]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:129:32: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_iterator() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:57:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] + 452 | cargo(me) = cargo(_origin); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' + 203 | CyclicShape(CyclicShape const & other) : + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator > > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape > > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator > > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString > >&, seqan::Tag) [with THost = const seqan::String >; TSpec = seqan::GappedShape >; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator > > > >]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:56:21: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = const seqan::String >; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:175:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_alloc_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:45:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] + 452 | cargo(me) = cargo(_origin); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' + 203 | CyclicShape(CyclicShape const & other) : + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::Tag >, seqan::ModCyclicShape > > > >; TSource = seqan::ModifiedString >, seqan::Tag >, seqan::ModCyclicShape > > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::Tag >, seqan::ModCyclicShape > > > >; TSource = seqan::ModifiedString >, seqan::Tag >, seqan::ModCyclicShape > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::ModifiedString >, seqan::Tag >; TSpec = seqan::GappedShape >; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::Tag >, seqan::ModCyclicShape > > > >]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:56:21: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::ModifiedString >, seqan::Tag >; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:185:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_mod_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] + 452 | cargo(me) = cargo(_origin); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' + 203 | CyclicShape(CyclicShape const & other) : + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator > > > >; TSource = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModCyclicShape > > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator > > > >; TSource = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModCyclicShape > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator > > > >]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:56:21: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:195:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_infix_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:47:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] + 452 | cargo(me) = cargo(_origin); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' + 203 | CyclicShape(CyclicShape const & other) : + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator >, 1> > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape >, 1> > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator >, 1> > > >; TSource = seqan::ModifiedString >, seqan::ModCyclicShape >, 1> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:386:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(seqan::ModifiedString > >&, seqan::Tag) [with THost = const seqan::String >; TSpec = seqan::FixedShape<2, seqan::GappedShape >, 1>; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator >, 1> > > >]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:56:21: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = const seqan::String >; TSpec = seqan::FixedShape<2, seqan::GappedShape >, 1>; typename seqan::Value::Type = char]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:208:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_fixed_alloc_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:49:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 1> >& seqan::CyclicShape >, 1> >::operator=(const seqan::CyclicShape >, 1> >&)' is deprecated [-Wdeprecated-copy] + 452 | cargo(me) = cargo(_origin); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 1> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 2; unsigned int RightOffset = 1; int P00 = 1; int P01 = 2; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' + 288 | CyclicShape(CyclicShape const &) + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator > > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape > > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator > > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:427:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(const seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::String >; TSpec = seqan::GappedShape >; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:689:15: required from 'typename seqan::Size > >::Type seqan::length(const seqan::ModifiedString >&) [with THost = seqan::String >; TSpec = seqan::CyclicShape > >; typename seqan::Size > >::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:107:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_functions() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:56:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'seqan::CyclicShape > >& seqan::CyclicShape > >::operator=(const seqan::CyclicShape > >&)' is deprecated [-Wdeprecated-copy] + 452 | cargo(me) = cargo(_origin); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' + 203 | CyclicShape(CyclicShape const & other) : + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_interface.h:387:15: required from 'void seqan::goBegin(TIterator&, TContainer&) [with TIterator = const char*; TContainer = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:530:12: required from 'void seqan::goEnd(seqan::ModifiedIterator > >&, TContainer&) [with THost = const char*; TSpec = seqan::GappedShape >; TContainer = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModCyclicShape > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:441:10: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator > > > >]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:57:22: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:195:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_infix_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:47:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_interface.h:387:15: required from 'void seqan::goBegin(TIterator&, TContainer&) [with TIterator = const char*; TContainer = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:530:12: required from 'void seqan::goEnd(seqan::ModifiedIterator > >&, TContainer&) [with THost = const char*; TSpec = seqan::GappedShape >; TContainer = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModCyclicShape > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:441:10: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator > > > >]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:57:22: required from 'seqan::String::Type> test_iterator(TString&, const seqan::CyclicShape&) [with TString = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::GappedShape >; typename seqan::Value::Type = char]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:195:33: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_iterator_generic_infix_charstring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:47:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 343 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:371:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(const seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::String >; TSpec = seqan::FixedShape<1, seqan::GappedShape >, 0>; TTagSpec = seqan::Rooted_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::ModifiedString&) [with TStream = std::basic_ostream; THost = seqan::String >; TSpec = seqan::ModCyclicShape >, 0> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:89:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:55:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 0> >& seqan::CyclicShape >, 0> >::operator=(const seqan::CyclicShape >, 0> >&)' is deprecated [-Wdeprecated-copy] + 452 | cargo(me) = cargo(_origin); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 0> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 1; unsigned int RightOffset = 0; int P00 = 1; int P01 = 0; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' + 288 | CyclicShape(CyclicShape const &) + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:427:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(const seqan::ModifiedString > >&, seqan::Tag) [with THost = seqan::String >; TSpec = seqan::FixedShape<1, seqan::GappedShape >, 0>; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator >, 0> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:689:15: required from 'typename seqan::Size > >::Type seqan::length(const seqan::ModifiedString >&) [with THost = seqan::String >; TSpec = seqan::CyclicShape >, 0> >; typename seqan::Size > >::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1086:31: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::ModifiedString&) [with TStream = std::basic_ostream; THost = seqan::String >; TSpec = seqan::ModCyclicShape >, 0> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:89:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:55:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 0> >& seqan::CyclicShape >, 0> >::operator=(const seqan::CyclicShape >, 0> >&)' is deprecated [-Wdeprecated-copy] + 452 | cargo(me) = cargo(_origin); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 0> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 1; unsigned int RightOffset = 0; int P00 = 1; int P01 = 0; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' + 288 | CyclicShape(CyclicShape const &) + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:371:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::begin(const seqan::ModifiedString > >&, seqan::Tag) [with THost = const seqan::String >; TSpec = seqan::FixedShape<1, seqan::GappedShape >, 0>; TTagSpec = seqan::Rooted_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::ModifiedIterator >, seqan::AdaptorIterator > >, seqan::ModCyclicShape >, 0> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::ModifiedString&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::ModCyclicShape >, 0> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:92:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:55:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 0> >& seqan::CyclicShape >, 0> >::operator=(const seqan::CyclicShape >, 0> >&)' is deprecated [-Wdeprecated-copy] + 452 | cargo(me) = cargo(_origin); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 0> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 1; unsigned int RightOffset = 0; int P00 = 1; int P01 = 0; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' + 288 | CyclicShape(CyclicShape const &) + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h: In instantiation of 'void seqan::_copyCargoImpl(TDest&, TSource&, seqan::True) [with TDest = seqan::ModifiedIterator >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:458:19: required from 'void seqan::_copyCargo(TDest&, TSource&) [with TDest = seqan::ModifiedIterator >, 0> > > >; TSource = const seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:427:15: required from 'typename seqan::Iterator > >, const seqan::Tag >::Type seqan::end(const seqan::ModifiedString > >&, seqan::Tag) [with THost = const seqan::String >; TSpec = seqan::FixedShape<1, seqan::GappedShape >, 0>; TTagSpec = seqan::Standard_; typename seqan::Iterator > >, const seqan::Tag >::Type = seqan::ModifiedIterator >, 0> > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_cyclic_shape.h:689:15: required from 'typename seqan::Size > >::Type seqan::length(const seqan::ModifiedString >&) [with THost = const seqan::String >; TSpec = seqan::CyclicShape >, 0> >; typename seqan::Size > >::Type = long unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1086:31: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:801:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::ModifiedString&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::ModCyclicShape >, 0> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:946:71: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*, const char*, ...) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:998:21: required from 'bool seqan::ClassTest::testEqual(const char*, int, const T1&, const char*, const T2&, const char*) [with T1 = seqan::ModifiedString >, seqan::ModCyclicShape >, 0> > > >; T2 = char [11]]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:92:5: required from 'void SEQAN_TEST_test_modifier_cyclic_shape_modified_string_construct() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:55:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:452:15: warning: implicitly-declared 'constexpr seqan::CyclicShape >, 0> >& seqan::CyclicShape >, 0> >::operator=(const seqan::CyclicShape >, 0> >&)' is deprecated [-Wdeprecated-copy] + 452 | cargo(me) = cargo(_origin); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:68, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.h:39, + from /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape/test_modifier_cyclic_shape.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:288:5: note: because 'seqan::CyclicShape >, 0> >' has user-provided 'seqan::CyclicShape >, RightOffset> >::CyclicShape(const seqan::CyclicShape >, RightOffset> >&) [with unsigned int LeftOffset = 1; unsigned int RightOffset = 0; int P00 = 1; int P01 = 0; int P02 = 0; int P03 = 0; int P04 = 0; int P05 = 0; int P06 = 0; int P07 = 0; int P08 = 0; int P09 = 0; int P10 = 0; int P11 = 0; int P12 = 0; int P13 = 0; int P14 = 0; int P15 = 0; int P16 = 0; int P17 = 0; int P18 = 0; int P19 = 0]' + 288 | CyclicShape(CyclicShape const &) + | ^~~~~~~~~~~ +[ 18%] Linking CXX executable ../../bin/test_journaled_string_tree +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_journaled_string_tree.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_journaled_string_tree.dir/test_journaled_string_tree.cpp.o -o ../../bin/test_journaled_string_tree -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 19%] Built target test_modifier_cyclic_shape -make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/depend +[ 18%] Built target test_journaled_string_tree +make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/parse_lm /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm/CMakeFiles/test_parse_lm.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm/CMakeFiles/test_parse_lm.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm/CMakeFiles/test_parse_lm.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm/CMakeFiles/test_parse_lm.dir/depend.internal". -Scanning dependencies of target test_parse_lm +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/depend.internal". +Scanning dependencies of target test_parallel make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/build +make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 19%] Building CXX object tests/parse_lm/CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/parse_lm/test_parse_lm.cpp +[ 19%] Building CXX object tests/parallel/CMakeFiles/test_parallel.dir/test_parallel.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_parallel.dir/test_parallel.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/parallel/test_parallel.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, @@ -62113,6 +62168,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +[ 19%] Linking CXX executable ../../bin/test_modifier_cyclic_shape +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_modifier_cyclic_shape.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_modifier_cyclic_shape.dir/test_modifier_cyclic_shape.cpp.o -o ../../bin/test_modifier_cyclic_shape -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 19%] Built target test_modifier_cyclic_shape +make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/parse_lm /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm/CMakeFiles/test_parse_lm.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm/CMakeFiles/test_parse_lm.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm/CMakeFiles/test_parse_lm.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm/CMakeFiles/test_parse_lm.dir/depend.internal". +Scanning dependencies of target test_parse_lm +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 19%] Building CXX object tests/parse_lm/CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/parse_lm/test_parse_lm.cpp [ 19%] Linking CXX executable ../../bin/test_misc cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_misc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_misc.dir/test_misc.cpp.o -o ../../bin/test_misc -lrt -lz -lbz2 @@ -62205,43 +62276,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:61, - from /build/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' - 2048 | (_arg1), # _arg1, \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:61, - from /build/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -62319,6 +62353,43 @@ [ 19%] Linking CXX executable ../../bin/test_modifier cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_modifier.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_modifier.dir/test_modifier.cpp.o -o ../../bin/test_modifier -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:61, + from /build/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' + 2048 | (_arg1), # _arg1, \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:61, + from /build/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 19%] Built target test_modifier make -f tests/platform/CMakeFiles/test_platform.dir/build.make tests/platform/CMakeFiles/test_platform.dir/depend @@ -62332,11 +62403,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 19%] Building CXX object tests/platform/CMakeFiles/test_platform.dir/test_platform.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/platform && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_platform.dir/test_platform.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/platform/test_platform.cpp -[ 19%] Linking CXX executable ../../bin/test_parallel -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_parallel.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_parallel.dir/test_parallel.cpp.o -o ../../bin/test_parallel -lrt -lz -lbz2 +[ 19%] Linking CXX executable ../../bin/test_platform +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/platform && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_platform.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_platform.dir/test_platform.cpp.o -o ../../bin/test_platform -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 19%] Built target test_parallel +[ 19%] Built target test_platform make -f tests/random/CMakeFiles/test_random.dir/build.make tests/random/CMakeFiles/test_random.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/random /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/random /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/random/CMakeFiles/test_random.dir/DependInfo.cmake --color= @@ -62348,11 +62419,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 19%] Building CXX object tests/random/CMakeFiles/test_random.dir/test_random.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/random && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_random.dir/test_random.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/random/test_random.cpp -[ 19%] Linking CXX executable ../../bin/test_parse_lm -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_parse_lm.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o -o ../../bin/test_parse_lm -lrt -lz -lbz2 +[ 19%] Linking CXX executable ../../bin/test_parallel +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_parallel.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_parallel.dir/test_parallel.cpp.o -o ../../bin/test_parallel -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 19%] Built target test_parse_lm +[ 19%] Built target test_parallel make -f tests/realign/CMakeFiles/test_realign.dir/build.make tests/realign/CMakeFiles/test_realign.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/realign /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/realign /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/realign/CMakeFiles/test_realign.dir/DependInfo.cmake --color= @@ -62364,11 +62435,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 19%] Building CXX object tests/realign/CMakeFiles/test_realign.dir/test_realign.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/realign && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_realign.dir/test_realign.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp -[ 19%] Linking CXX executable ../../bin/test_platform -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/platform && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_platform.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_platform.dir/test_platform.cpp.o -o ../../bin/test_platform -lrt -lz -lbz2 +[ 19%] Linking CXX executable ../../bin/test_parse_lm +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_parse_lm.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_parse_lm.dir/test_parse_lm.cpp.o -o ../../bin/test_parse_lm -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 19%] Built target test_platform +[ 19%] Built target test_parse_lm make -f tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build.make tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/reduced_aminoacid /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/DependInfo.cmake --color= @@ -62419,16 +62490,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 20%] Linking CXX executable ../../bin/test_random -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/random && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_random.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_random.dir/test_random.cpp.o -o ../../bin/test_random -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 20%] Built target test_random -make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/rna_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: @@ -62443,12 +62504,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::CompressedSA, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>]' 143 | operator = (Segment const & source) | ^~~~~~~~ -Scanning dependencies of target test_rna_io -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 20%] Building CXX object tests/rna_io/CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: @@ -62639,6 +62694,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::ModifiedString, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +[ 20%] Linking CXX executable ../../bin/test_random +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/random && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_random.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_random.dir/test_random.cpp.o -o ../../bin/test_random -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 20%] Built target test_random +make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/rna_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/depend.internal". +Scanning dependencies of target test_rna_io +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 20%] Building CXX object tests/rna_io/CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:37: @@ -62680,6 +62751,62 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, + from /build/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' + 2048 | (_arg1), # _arg1, \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, + from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:42, + from /build/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, + from /build/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, + from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:42, + from /build/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65, + from /build/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:41: +In member function 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >; unsigned int m = 3; TPack = seqan::Tag]', + inlined from 'void comparePipeStream(TPipe&, const TStrings&) [with TPipe = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Sampler<3> >; TStrings = seqan::StringSet > >]' at /build/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:330:9: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:203:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] + 203 | outRef->i2.i[skipped++] = 0; + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:61, + from /build/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'void comparePipeStream(TPipe&, const TStrings&) [with TPipe = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Sampler<3> >; TStrings = seqan::StringSet > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 3 to object 'seqan::Tuple, 3, seqan::Tag >::i' with size 3 declared here + 141 | typename StoredTupleValue_::Type i[SIZE]; + | ^ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:38: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::CompressedSA, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >, void, ReducedFMIndexConfig_>, seqan::InfixSegment>]': @@ -62722,21 +62849,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>; TIterator = seqan::ModifiedIterator*, seqan::ModView, seqan::SimpleType > > > > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65, - from /build/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:41: -In member function 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >; unsigned int m = 3; TPack = seqan::Tag]', - inlined from 'void comparePipeStream(TPipe&, const TStrings&) [with TPipe = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Sampler<3> >; TStrings = seqan::StringSet > >]' at /build/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:330:9: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:203:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] - 203 | outRef->i2.i[skipped++] = 0; - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:61, - from /build/seqan2-2.4.0+dfsg/tests/pipe/test_pipe.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'void comparePipeStream(TPipe&, const TStrings&) [with TPipe = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Sampler<3> >; TStrings = seqan::StringSet > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 3 to object 'seqan::Tuple, 3, seqan::Tag >::i' with size 3 declared here - 141 | typename StoredTupleValue_::Type i[SIZE]; - | ^ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:46, @@ -62761,47 +62873,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple > >, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple > >, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, - from /build/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:313:28: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 313 | SEQAN_ASSERT_EQ(sizeof(alph_t), 1); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2048:45: note: in definition of macro 'SEQAN_ASSERT_EQ' - 2048 | (_arg1), # _arg1, \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, - from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:42, - from /build/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, - from /build/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:314:48: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 314 | SEQAN_ASSERT((IsSameType::Type, True>::VALUE)); - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, - from /build/seqan2-2.4.0+dfsg/include/seqan/align_extend.h:42, - from /build/seqan2-2.4.0+dfsg/tests/multiple_translation_units/test_multiple_translation_units_2.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:46, @@ -63109,6 +63180,35 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:47, + from /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:45, + from /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:45, + from /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:46, @@ -63161,35 +63261,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:47, - from /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:45, - from /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:45, - from /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:47, @@ -63237,6 +63308,36 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:47, + from /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:45, + from /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:45, + from /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:46, @@ -63341,36 +63442,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:47, - from /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:45, - from /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:45, - from /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:47, @@ -63461,58 +63532,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:46, - from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; seqan::FibreSALF = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >; TSpec = seqan::FMIndex; TFibre = seqan::FibreSALF_]' -/build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 202 | *refNext = *I; - | ~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:46, - from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 203 | *I = *refPrev; - | ~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:46, - from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 243 | *cur = *refPrev; - | ~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = int]': /build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const seqan::Tag&) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = int; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' @@ -63556,52 +63575,52 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:46, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; seqan::FibreSALF = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >; TSpec = seqan::FMIndex; TFibre = seqan::FibreSALF_]' /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:46, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:46, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, @@ -63644,6 +63663,58 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:46, + from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm.h:445:22: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSALF) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >; TSpec = void; TConfig = ReducedFMIndexConfig_; seqan::FibreSALF = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::ModView, seqan::SimpleType > > > > >, seqan::Owner > >; TSpec = seqan::FMIndex; TFibre = seqan::FibreSALF_]' +/build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:313:17: required from 'void SEQAN_TEST_test_reduced_aminoacid_murphy10_modview_fmindex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:52:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 202 | *refNext = *I; + | ~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:46, + from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 203 | *I = *refPrev; + | ~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.h:46, + from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 243 | *cur = *refPrev; + | ~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid/test_reduced_aminoacid.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/realign/test_realign.cpp:37: @@ -63937,6 +64008,21 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: +In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', + inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' at /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] + 470 | outRef->i2.i[skipped++] = 0; + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 to object 'seqan::Tuple >::i' with size 7 declared here + 141 | typename StoredTupleValue_::Type i[SIZE]; + | ^ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSeqHValue = seqan::ConsensusScoreSequenceEntry >, seqan::Alloc<> > >; TSeqVValue = seqan::ConsensusScoreSequenceEntry, seqan::Alloc<> >, seqan::InfixSegment> >; TSeqVIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TScoringScheme = seqan::Score >, seqan::Score > > >; TDPCell = seqan::DPCell_ >; TColumnDescriptor = seqan::MetaColumnDescriptor, seqan::Tag >; TDPProfile = seqan::DPProfile_ >, seqan::Tag, seqan::TracebackOn, seqan::Tag > >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSeqHValue = seqan::ConsensusScoreSequenceEntry >, seqan::Alloc<> > >; TSeqVValue = seqan::ConsensusScoreSequenceEntry, seqan::Alloc<> >, seqan::InfixSegment> >; TSeqVIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TScoringScheme = seqan::Score >, seqan::Score > > >; TColumnDescriptor = seqan::MetaColumnDescriptor, seqan::Tag >; TDPProfile = seqan::DPProfile_ >, seqan::Tag, seqan::TracebackOn, seqan::Tag > >, seqan::Tag >]' @@ -63966,6 +64052,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +[ 20%] Linking CXX executable ../../bin/test_pipe +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/pipe && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_pipe.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_pipe.dir/test_pipe.cpp.o -o ../../bin/test_pipe -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:40, from /build/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:38: @@ -63989,6 +64078,13 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 20%] Built target test_pipe +make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/roi_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:40, from /build/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:38: @@ -64013,6 +64109,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +Scanning dependencies of target test_roi_io +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 20%] Building CXX object tests/roi_io/CMakeFiles/test_roi_io.dir/test_roi_io.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_roi_io.dir/test_roi_io.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/roi_io/test_roi_io.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:40, from /build/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:38: @@ -64181,22 +64283,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 20%] Linking CXX executable ../../bin/test_pipe -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/pipe && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_pipe.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_pipe.dir/test_pipe.cpp.o -o ../../bin/test_pipe -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 20%] Built target test_pipe -make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/roi_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/depend.internal". -Scanning dependencies of target test_roi_io -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 20%] Building CXX object tests/roi_io/CMakeFiles/test_roi_io.dir/test_roi_io.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_roi_io.dir/test_roi_io.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/roi_io/test_roi_io.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/rna_io.h:58, from /build/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:42, from /build/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:38: @@ -64240,21 +64326,6 @@ /usr/include/c++/10/bits/stl_construct.h:109:7: note: synthesized method 'seqan::RnaRecord::RnaRecord(const seqan::RnaRecord&)' first required here 109 | { ::new(static_cast(__p)) _Tp(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:65, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:36: -In member function 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]', - inlined from 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]' at /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1330:13: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] - 470 | outRef->i2.i[skipped++] = 0; - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_fm.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h: In function 'bool seqan::append(seqan::Pool&, TSource&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, long unsigned int, seqan::File > > >; TSource = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >, seqan::Multi >, seqan::Pair >, seqan::String > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 to object 'seqan::Tuple >::i' with size 7 declared here - 141 | typename StoredTupleValue_::Type i[SIZE]; - | ^ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/rna_io.h:58, from /build/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.h:42, from /build/seqan2-2.4.0+dfsg/tests/rna_io/test_rna_io.cpp:38: @@ -64524,9 +64595,9 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/seeds/CMakeFiles/test_seeds_combination.dir/build.make tests/seeds/CMakeFiles/test_seeds_combination.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 20%] Linking CXX executable ../../bin/test_index_fm [ 20%] Building CXX object tests/seeds/CMakeFiles/test_seeds_combination.dir/test_seeds_combination.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_combination.dir/test_seeds_combination.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_combination.cpp -[ 20%] Linking CXX executable ../../bin/test_index_fm cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_fm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o -o ../../bin/test_index_fm -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' @@ -64579,19 +64650,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 20%] Linking CXX executable ../../bin/test_score -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/score && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_score.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_score.dir/test_score.cpp.o -o ../../bin/test_score -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 20%] Built target test_score -make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_base.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_base.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_base.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_base.dir/depend.internal". -Scanning dependencies of target test_seeds_seed_base -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_extension.cpp:37: @@ -64629,20 +64687,25 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +[ 20%] Linking CXX executable ../../bin/test_score +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/score && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_score.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_score.dir/test_score.cpp.o -o ../../bin/test_score -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 20%] Built target test_score +make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_base.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_base.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_base.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_base.dir/depend.internal". +Scanning dependencies of target test_seeds_seed_base +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 20%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_base.dir/test_seeds_seed_base.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_seed_base.dir/test_seeds_seed_base.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_base.cpp [ 20%] Linking CXX executable ../../bin/test_realign cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/realign && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_realign.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_realign.dir/test_realign.cpp.o -o ../../bin/test_realign -lrt -lz -lbz2 -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, - from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In function 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = seqan::String > >; TObject = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:9: warning: '' is used uninitialized in this function [-Wuninitialized] - 102 | data_iterator = TIterator(); - | ^~~~~~~~~~~~~ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 20%] Built target test_realign make -f tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build.make tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/depend @@ -64656,26 +64719,18 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 20%] Building CXX object tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/test_seeds_global_chaining.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_global_chaining.dir/test_seeds_global_chaining.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_global_chaining.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_helpers.h:42, + from /build/seqan2-2.4.0+dfsg/tests/index/test_index_base.cpp:35: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In function 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = seqan::String > >; TObject = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:9: warning: '' is used uninitialized in this function [-Wuninitialized] + 102 | data_iterator = TIterator(); + | ^~~~~~~~~~~~~ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In function 'void seqan::_createSuffixArrayPipelining(TSA&, const TObject&, TAlgSpec) [with TSA = seqan::String > >; TObject = seqan::String, seqan::Packed<> >; TAlgSpec = seqan::Skew7]': /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:102:9: warning: '' is used uninitialized in this function [-Wuninitialized] 102 | data_iterator = TIterator(); | ^~~~~~~~~~~~~ -[ 21%] Linking CXX executable ../../bin/test_seeds_combination -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_combination.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_combination.dir/test_seeds_combination.cpp.o -o ../../bin/test_seeds_combination -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Built target test_seeds_combination -make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/depend.internal". -Scanning dependencies of target test_seeds_seed_chained -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_chained.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_base.cpp:38: @@ -64713,6 +64768,38 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +[ 21%] Linking CXX executable ../../bin/test_seeds_combination +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_combination.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_combination.dir/test_seeds_combination.cpp.o -o ../../bin/test_seeds_combination -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 21%] Built target test_seeds_combination +make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/depend.internal". +Scanning dependencies of target test_seeds_seed_chained +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_chained.cpp +[ 21%] Linking CXX executable ../../bin/test_seeds_extension +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_extension.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_extension.dir/test_seeds_extension.cpp.o -o ../../bin/test_seeds_extension -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 21%] Built target test_seeds_extension +make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/depend.internal". +Scanning dependencies of target test_seeds_seed_diagonal +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_diagonal.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_global_chaining.cpp:37: @@ -64753,6 +64840,19 @@ [ 21%] Linking CXX executable ../../bin/test_seeds_seed_base cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_base.dir/test_seeds_seed_base.cpp.o -o ../../bin/test_seeds_seed_base -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 21%] Built target test_seeds_seed_base +make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/depend.internal". +Scanning dependencies of target test_seeds_seed_set_unordered +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_set_unordered.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_chained.cpp:37: @@ -64790,35 +64890,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Built target test_seeds_seed_base -make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/depend.internal". -Scanning dependencies of target test_seeds_seed_diagonal -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_diagonal.cpp -[ 21%] Linking CXX executable ../../bin/test_seeds_extension -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_extension.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_extension.dir/test_seeds_extension.cpp.o -o ../../bin/test_seeds_extension -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Built target test_seeds_extension -make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/depend.internal". -Scanning dependencies of target test_seeds_seed_set_unordered -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_set_unordered.cpp [ 21%] Linking CXX executable ../../bin/test_reduced_aminoacid cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/reduced_aminoacid && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_reduced_aminoacid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_reduced_aminoacid.dir/test_reduced_aminoacid.cpp.o -o ../../bin/test_reduced_aminoacid -lrt -lz -lbz2 @@ -64835,38 +64906,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/test_seeds_seed_set_base.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_seed_set_base.dir/test_seeds_seed_set_base.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_set_base.cpp -[ 21%] Linking CXX executable ../../bin/test_seeds_global_chaining -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_global_chaining.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_global_chaining.dir/test_seeds_global_chaining.cpp.o -o ../../bin/test_seeds_global_chaining -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Built target test_seeds_global_chaining -make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/depend.internal". -Scanning dependencies of target test_seeds_align_banded_chain_impl -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp -[ 21%] Linking CXX executable ../../bin/test_seeds_seed_chained -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_chained.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o -o ../../bin/test_seeds_seed_chained -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Built target test_seeds_seed_chained -make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/depend.internal". -Scanning dependencies of target test_seeds_banded_chain_alignment_interface -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_diagonal.cpp:37: @@ -64904,22 +64943,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 21%] Linking CXX executable ../../bin/test_rna_io -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_rna_io.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o -o ../../bin/test_rna_io -lrt -lz -lbz2 +[ 21%] Linking CXX executable ../../bin/test_seeds_global_chaining +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_global_chaining.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_global_chaining.dir/test_seeds_global_chaining.cpp.o -o ../../bin/test_seeds_global_chaining -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Built target test_rna_io -make -f tests/seq_io/CMakeFiles/test_seq_io.dir/build.make tests/seq_io/CMakeFiles/test_seq_io.dir/depend +[ 21%] Built target test_seeds_global_chaining +make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seq_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/depend.internal". -Scanning dependencies of target test_seq_io +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/depend.internal". +Scanning dependencies of target test_seeds_align_banded_chain_impl make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/seq_io/CMakeFiles/test_seq_io.dir/build.make tests/seq_io/CMakeFiles/test_seq_io.dir/build +make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Building CXX object tests/seq_io/CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp +[ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_set_unordered.cpp:37: @@ -64957,6 +64996,54 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +[ 21%] Linking CXX executable ../../bin/test_seeds_seed_chained +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_chained.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_chained.dir/test_seeds_seed_chained.cpp.o -o ../../bin/test_seeds_seed_chained -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 21%] Built target test_seeds_seed_chained +make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/depend.internal". +Scanning dependencies of target test_seeds_banded_chain_alignment_interface +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 21%] Building CXX object tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp +[ 21%] Linking CXX executable ../../bin/test_seeds_seed_diagonal +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_diagonal.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o -o ../../bin/test_seeds_seed_diagonal -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 21%] Built target test_seeds_seed_diagonal +make -f tests/seq_io/CMakeFiles/test_seq_io.dir/build.make tests/seq_io/CMakeFiles/test_seq_io.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seq_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/depend.internal". +Scanning dependencies of target test_seq_io +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/seq_io/CMakeFiles/test_seq_io.dir/build.make tests/seq_io/CMakeFiles/test_seq_io.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 21%] Building CXX object tests/seq_io/CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp +[ 21%] Linking CXX executable ../../bin/test_seeds_seed_set_unordered +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_set_unordered.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o -o ../../bin/test_seeds_seed_set_unordered -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 21%] Built target test_seeds_seed_set_unordered +make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/sequence /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_stringset_v2.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_stringset_v2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_stringset_v2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_stringset_v2.dir/depend.internal". +Scanning dependencies of target test_stringset_v2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 21%] Building CXX object tests/sequence/CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/seeds/test_seeds_seed_set_base.cpp:37: @@ -64994,22 +65081,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 21%] Linking CXX executable ../../bin/test_seeds_seed_diagonal -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_diagonal.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_diagonal.dir/test_seeds_seed_diagonal.cpp.o -o ../../bin/test_seeds_seed_diagonal -lrt -lz -lbz2 +[ 21%] Linking CXX executable ../../bin/test_rna_io +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_rna_io.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_rna_io.dir/test_rna_io.cpp.o -o ../../bin/test_rna_io -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Built target test_seeds_seed_diagonal -make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/depend +[ 21%] Built target test_rna_io +make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/sequence /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_stringset_v2.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_stringset_v2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_stringset_v2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_stringset_v2.dir/depend.internal". -Scanning dependencies of target test_stringset_v2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/sequence /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_sequence_v2.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_sequence_v2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_sequence_v2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_sequence_v2.dir/depend.internal". +Scanning dependencies of target test_sequence_v2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/build +make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Building CXX object tests/sequence/CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp +[ 21%] Building CXX object tests/sequence/CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:40: @@ -65050,22 +65137,6 @@ [ 21%] Linking CXX executable ../../bin/test_index_base cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_index_base.dir/test_index_base.cpp.o -o ../../bin/test_index_base -lrt -lz -lbz2 -[ 21%] Linking CXX executable ../../bin/test_seeds_seed_set_unordered -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_set_unordered.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_set_unordered.dir/test_seeds_seed_set_unordered.cpp.o -o ../../bin/test_seeds_seed_set_unordered -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Built target test_seeds_seed_set_unordered -make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/sequence /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_sequence_v2.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_sequence_v2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_sequence_v2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_sequence_v2.dir/depend.internal". -Scanning dependencies of target test_sequence_v2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Building CXX object tests/sequence/CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 21%] Built target test_index_base make -f tests/sequence/CMakeFiles/test_sequence.dir/build.make tests/sequence/CMakeFiles/test_sequence.dir/depend @@ -65077,8 +65148,6 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/sequence/CMakeFiles/test_sequence.dir/build.make tests/sequence/CMakeFiles/test_sequence.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Building CXX object tests/sequence/CMakeFiles/test_sequence.dir/test_sequence.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_sequence.dir/test_sequence.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:40: @@ -65116,6 +65185,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +[ 21%] Building CXX object tests/sequence/CMakeFiles/test_sequence.dir/test_sequence.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_sequence.dir/test_sequence.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:40: @@ -65168,6 +65239,30 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag]': /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment >, seqan::SuffixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' @@ -65221,8 +65316,33 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/tests/seq_io/test_read_bam.h:53:51: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -65245,8 +65365,55 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/tests/seq_io/test_read_bam.h:53:51: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/tests/seq_io/test_read_bam.h:53:51: required from here @@ -65267,6 +65434,31 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/tests/seq_io/test_write_bam.h:51:52: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:42: /build/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In instantiation of 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:91:2: required from here @@ -65385,33 +65577,8 @@ | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' @@ -65433,27 +65600,249 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetIter(TStringSet&) [with TStringSet = const seqan::StringSet >, seqan::Owner<> >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1566:22: required from 'void StringSetTestCommon__Iter::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1558:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1516:22: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 1516 | SEQAN_ASSERT(TString(*iterator) == "AAAA"); + | ^~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1537:22: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 1537 | SEQAN_ASSERT(TString(*iterator) == "TTTT"); + | ^~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetBegin(TStringSet&) [with TStringSet = const seqan::StringSet >, seqan::Owner<> >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:887:23: required from 'void StringSetTestCommon__Begin::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:879:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:855:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 855 | SEQAN_ASSERT(TString(*begin(stringSet)) == str); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:856:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 856 | SEQAN_ASSERT(TString(*begin(stringSet, Standard())) == str); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:857:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 857 | SEQAN_ASSERT(TString(*begin(stringSet, Rooted())) == str); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetIter(TStringSet&) [with TStringSet = const seqan::StringSet >, seqan::Owner<> >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1566:22: required from 'void StringSetTestCommon__Iter::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1558:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1516:22: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 1516 | SEQAN_ASSERT(TString(*iterator) == "AAAA"); + | ^~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1537:22: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 1537 | SEQAN_ASSERT(TString(*iterator) == "TTTT"); + | ^~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetBegin(TStringSet&) [with TStringSet = const seqan::StringSet >, seqan::Owner<> >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:887:23: required from 'void StringSetTestCommon__Begin::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:879:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:855:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 855 | SEQAN_ASSERT(TString(*begin(stringSet)) == str); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:856:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 856 | SEQAN_ASSERT(TString(*begin(stringSet, Standard())) == str); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:857:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 857 | SEQAN_ASSERT(TString(*begin(stringSet, Rooted())) == str); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetIter(TStringSet&) [with TStringSet = const seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1566:22: required from 'void StringSetTestCommon__Iter::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1558:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1516:22: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] + 1516 | SEQAN_ASSERT(TString(*iterator) == "AAAA"); + | ^~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1537:22: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] + 1537 | SEQAN_ASSERT(TString(*iterator) == "TTTT"); + | ^~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetBegin(TStringSet&) [with TStringSet = const seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:887:23: required from 'void StringSetTestCommon__Begin::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:879:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:855:18: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] + 855 | SEQAN_ASSERT(TString(*begin(stringSet)) == str); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:856:18: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] + 856 | SEQAN_ASSERT(TString(*begin(stringSet, Standard())) == str); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:857:18: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] + 857 | SEQAN_ASSERT(TString(*begin(stringSet, Rooted())) == str); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' + 2224 | (_arg1), # _arg1)) { \ + | ^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:42: /build/seqan2-2.4.0+dfsg/tests/sequence/test_string.h: In instantiation of 'void Test_Assignments_Combinatoric(TTarget&, TSource, seqan::Tag, size_t) [with TTarget = seqan::String >; TSource = seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::TagExact_; size_t = long unsigned int]': /build/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:1191:34: required from 'void SEQAN_TEST_Combinatoric() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' @@ -65490,56 +65879,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/tests/seq_io/test_read_bam.h:53:51: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/tests/seq_io/test_write_bam.h:51:52: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:36: @@ -65560,31 +65899,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/tests/seq_io/test_read_bam.h:53:51: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seq_io/test_seq_io.cpp:36: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' @@ -65925,39 +66239,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetIter(TStringSet&) [with TStringSet = const seqan::StringSet >, seqan::Owner<> >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1566:22: required from 'void StringSetTestCommon__Iter::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1558:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1516:22: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 1516 | SEQAN_ASSERT(TString(*iterator) == "AAAA"); - | ^~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1537:22: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 1537 | SEQAN_ASSERT(TString(*iterator) == "TTTT"); - | ^~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' /build/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:815:5: required from 'void SEQAN_TEST_Segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' @@ -65985,216 +66266,85 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetBegin(TStringSet&) [with TStringSet = const seqan::StringSet >, seqan::Owner<> >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:887:23: required from 'void StringSetTestCommon__Begin::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:879:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:855:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 855 | SEQAN_ASSERT(TString(*begin(stringSet)) == str); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:856:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 856 | SEQAN_ASSERT(TString(*begin(stringSet, Standard())) == str); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:857:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 857 | SEQAN_ASSERT(TString(*begin(stringSet, Rooted())) == str); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetIter(TStringSet&) [with TStringSet = const seqan::StringSet >, seqan::Owner<> >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1566:22: required from 'void StringSetTestCommon__Iter::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1558:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1516:22: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 1516 | SEQAN_ASSERT(TString(*iterator) == "AAAA"); - | ^~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1537:22: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 1537 | SEQAN_ASSERT(TString(*iterator) == "TTTT"); - | ^~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetBegin(TStringSet&) [with TStringSet = const seqan::StringSet >, seqan::Owner<> >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:887:23: required from 'void StringSetTestCommon__Begin::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:879:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:855:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 855 | SEQAN_ASSERT(TString(*begin(stringSet)) == str); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:856:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 856 | SEQAN_ASSERT(TString(*begin(stringSet, Standard())) == str); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:857:18: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 857 | SEQAN_ASSERT(TString(*begin(stringSet, Rooted())) == str); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetIter(TStringSet&) [with TStringSet = const seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1566:22: required from 'void StringSetTestCommon__Iter::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1558:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1516:22: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] - 1516 | SEQAN_ASSERT(TString(*iterator) == "AAAA"); - | ^~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1537:22: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] - 1537 | SEQAN_ASSERT(TString(*iterator) == "TTTT"); - | ^~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h: In instantiation of 'void testStringSetBegin(TStringSet&) [with TStringSet = const seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:887:23: required from 'void StringSetTestCommon__Begin::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:879:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:855:18: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] - 855 | SEQAN_ASSERT(TString(*begin(stringSet)) == str); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:856:18: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] - 856 | SEQAN_ASSERT(TString(*begin(stringSet, Standard())) == str); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:857:18: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] - 857 | SEQAN_ASSERT(TString(*begin(stringSet, Rooted())) == str); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/debug_test_system.h:2224:44: note: in definition of macro 'SEQAN_ASSERT' - 2224 | (_arg1), # _arg1)) { \ - | ^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = std::__cxx11::list]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = std::__cxx11::list]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] + 1769 | ref = 'G'; + | ~~~~^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' + 69 | CountingChar(CountingChar const & other) : value(other.value) + | ^~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = std::__cxx11::list]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = std::__cxx11::list]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] + 1371 | val = 'A'; + | ~~~~^~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' + 69 | CountingChar(CountingChar const & other) : value(other.value) + | ^~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = std::__cxx11::list]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::__cxx11::list]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] + 1062 | val = 'A'; + | ~~~~^~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' + 69 | CountingChar(CountingChar const & other) : value(other.value) + | ^~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment >, seqan::SuffixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TGapScheme = seqan::Tag; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, unsigned int, const seqan::DPProfile_, TGapSpec, seqan::TracebackOn, TExecPolicy>&) [with TTraceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSeedSet = seqan::String > >; TSequenceH = seqan::String >; TSequenceV = seqan::String >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; TFreeEndGaps = seqan::FreeEndGaps_<>; TDPMatrixLocation = seqan::Tag; TGapSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >; TExecPolicy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(seqan::StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = seqan::TraceSegment_; TStringSetSpec = seqan::Owner<>; TSeeds = seqan::String > >; TSequenceH = seqan::String >; TSequenceV = seqan::String >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag; TGapsPlacement = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(seqan::Align&, const TSeeds&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int) [with TSequence = seqan::String >; TAlignSpec = seqan::Tag; TSeeds = seqan::String > >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment >, seqan::SuffixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TGapScheme = seqan::Tag; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, unsigned int, const seqan::DPProfile_, TGapSpec, seqan::TracebackOn, TExecPolicy>&) [with TTraceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSeedSet = seqan::String > >; TSequenceH = seqan::String >; TSequenceV = seqan::String >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; TFreeEndGaps = seqan::FreeEndGaps_<>; TDPMatrixLocation = seqan::Tag; TGapSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >; TExecPolicy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(seqan::StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = seqan::TraceSegment_; TStringSetSpec = seqan::Owner<>; TSeeds = seqan::String > >; TSequenceH = seqan::String >; TSequenceV = seqan::String >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag; TGapsPlacement = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(seqan::Align&, const TSeeds&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int) [with TSequence = seqan::String >; TAlignSpec = seqan::Tag; TSeeds = seqan::String > >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 647 | return Iter >(container(left), hostIterator(left) - right); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': @@ -66378,56 +66528,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment >, seqan::SuffixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TGapScheme = seqan::Tag; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, unsigned int, const seqan::DPProfile_, TGapSpec, seqan::TracebackOn, TExecPolicy>&) [with TTraceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSeedSet = seqan::String > >; TSequenceH = seqan::String >; TSequenceV = seqan::String >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; TFreeEndGaps = seqan::FreeEndGaps_<>; TDPMatrixLocation = seqan::Tag; TGapSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >; TExecPolicy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(seqan::StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = seqan::TraceSegment_; TStringSetSpec = seqan::Owner<>; TSeeds = seqan::String > >; TSequenceH = seqan::String >; TSequenceV = seqan::String >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag; TGapsPlacement = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(seqan::Align&, const TSeeds&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int) [with TSequence = seqan::String >; TAlignSpec = seqan::Tag; TSeeds = seqan::String > >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment >, seqan::SuffixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TGapScheme = seqan::Tag; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, unsigned int, const seqan::DPProfile_, TGapSpec, seqan::TracebackOn, TExecPolicy>&) [with TTraceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSeedSet = seqan::String > >; TSequenceH = seqan::String >; TSequenceV = seqan::String >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; TFreeEndGaps = seqan::FreeEndGaps_<>; TDPMatrixLocation = seqan::Tag; TGapSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >; TExecPolicy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(seqan::StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = seqan::TraceSegment_; TStringSetSpec = seqan::Owner<>; TSeeds = seqan::String > >; TSequenceH = seqan::String >; TSequenceV = seqan::String >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag; TGapsPlacement = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(seqan::Align&, const TSeeds&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int) [with TSequence = seqan::String >; TAlignSpec = seqan::Tag; TSeeds = seqan::String > >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:123:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_align_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2487:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 647 | return Iter >(container(left), hostIterator(left) - right); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -66492,26 +66592,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::SuffixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::SuffixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment >, seqan::SuffixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::SuffixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment >, seqan::SuffixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::SuffixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = seqan::Segment >, seqan::SuffixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::SuffixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:888:5: required from 'void SEQAN_TEST_Segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:93:2: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = std::__cxx11::list]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = std::__cxx11::list]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = std::forward_list]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = std::forward_list]' /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1769 | ref = 'G'; @@ -66520,8 +66603,8 @@ /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = std::__cxx11::list]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = std::__cxx11::list]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = std::forward_list]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = std::forward_list]' /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1371 | val = 'A'; @@ -66529,8 +66612,8 @@ /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = std::__cxx11::list]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::__cxx11::list]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = std::forward_list]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::forward_list]' /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1062 | val = 'A'; @@ -66539,6 +66622,23 @@ 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String >; TSpec = seqan::SuffixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::SuffixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:343:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = seqan::Segment >, seqan::SuffixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::SuffixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:385:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(T&, seqan::Tag) [with T = seqan::Segment >, seqan::SuffixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::SuffixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:362:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(T&) [with T = seqan::Segment >, seqan::SuffixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter >, seqan::SuffixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string.h:888:5: required from 'void SEQAN_TEST_Segment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:93:2: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::SuffixSegment>::Segment(const seqan::Segment >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:41: @@ -66583,6 +66683,63 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = char]' 143 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const seqan::String >&; TExpand = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String >; TTargetSpec = seqan::Alloc<>; TValue = const seqan::String >&; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet >, seqan::Owner<> >&; TSource = seqan::String >&]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value + | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const seqan::String >&; TExpand = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String >; TTargetSpec = seqan::Alloc<>; TValue = const seqan::String >&; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet >, seqan::Owner<> >&; TSource = seqan::String >&]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value + | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Packed<> >, seqan::Alloc<> >; TValue = const seqan::String, seqan::Packed<> >&; TExpand = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String, seqan::Packed<> >; TTargetSpec = seqan::Alloc<>; TValue = const seqan::String, seqan::Packed<> >&; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String, seqan::Packed<> >; TString2 = seqan::String, seqan::Packed<> >; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >&; TSource = seqan::String, seqan::Packed<> >&]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] + 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value + | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -66647,6 +66804,25 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TGapScheme = seqan::Tag; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, unsigned int, const seqan::DPProfile_, TGapSpec, seqan::TracebackOn, TExecPolicy>&) [with TTraceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSeedSet = seqan::String > >; TSequenceH = seqan::String >; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; TFreeEndGaps = seqan::FreeEndGaps_<>; TDPMatrixLocation = seqan::Tag; TGapSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >; TExecPolicy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(seqan::StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = seqan::TraceSegment_; TStringSetSpec = seqan::Owner<>; TSeeds = seqan::String > >; TSequenceH = seqan::String >; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag; TGapsPlacement = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:270:41: required from 'TScoreValue seqan::bandedChainAlignment(seqan::Gaps&, seqan::Gaps&, const TSeeds&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int) [with TSequenceH = seqan::String >; TGapSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapSpecV = seqan::Tag; TSeeds = seqan::String > >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:668:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_gaps_linear_global_two_score() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2500:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment; typename seqan::Iterator >::Type = seqan::Iter, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': @@ -66673,25 +66849,35 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TGapScheme = seqan::Tag; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::SuffixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, unsigned int, const seqan::DPProfile_, TGapSpec, seqan::TracebackOn, TExecPolicy>&) [with TTraceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSeedSet = seqan::String > >; TSequenceH = seqan::String >; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; TFreeEndGaps = seqan::FreeEndGaps_<>; TDPMatrixLocation = seqan::Tag; TGapSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >; TExecPolicy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(seqan::StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = seqan::TraceSegment_; TStringSetSpec = seqan::Owner<>; TSeeds = seqan::String > >; TSequenceH = seqan::String >; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag; TGapsPlacement = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:270:41: required from 'TScoreValue seqan::bandedChainAlignment(seqan::Gaps&, seqan::Gaps&, const TSeeds&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int) [with TSequenceH = seqan::String >; TGapSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapSpecV = seqan::Tag; TSeeds = seqan::String > >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:668:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_gaps_linear_global_two_score() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2500:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = std::deque]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = std::deque]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] + 1769 | ref = 'G'; + | ~~~~^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' + 69 | CountingChar(CountingChar const & other) : value(other.value) + | ^~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = std::deque]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = std::deque]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] + 1371 | val = 'A'; + | ~~~~^~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' + 69 | CountingChar(CountingChar const & other) : value(other.value) + | ^~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = std::deque]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::deque]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] + 1062 | val = 'A'; + | ~~~~^~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' + 69 | CountingChar(CountingChar const & other) : value(other.value) + | ^~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = char; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': @@ -66740,38 +66926,29 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = seqan::String >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const char (&)[5]; TExpand = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String >; TTargetSpec = seqan::Alloc<>; TValue = const char (&)[5]; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = char [5]; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet >, seqan::Owner<> >&; TSource = char (&)[5]]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2259:16: required from 'void StringSetTestCommon__SuffixOnValue::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2249:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' + 163 | String & operator =(String const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = std::forward_list]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = std::forward_list]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] - 1769 | ref = 'G'; - | ~~~~^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' - 69 | CountingChar(CountingChar const & other) : value(other.value) - | ^~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = std::forward_list]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = std::forward_list]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] - 1371 | val = 'A'; - | ~~~~^~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' - 69 | CountingChar(CountingChar const & other) : value(other.value) - | ^~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = std::forward_list]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::forward_list]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] - 1062 | val = 'A'; - | ~~~~^~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' - 69 | CountingChar(CountingChar const & other) : value(other.value) - | ^~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = std::deque]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = std::deque]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = std::vector]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = std::vector]' /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1769 | ref = 'G'; @@ -66780,120 +66957,46 @@ /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = std::deque]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = std::deque]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] - 1371 | val = 'A'; - | ~~~~^~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' - 69 | CountingChar(CountingChar const & other) : value(other.value) - | ^~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = std::deque]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = std::deque]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] - 1062 | val = 'A'; - | ~~~~^~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' - 69 | CountingChar(CountingChar const & other) : value(other.value) - | ^~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const seqan::String >&; TExpand = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String >; TTargetSpec = seqan::Alloc<>; TValue = const seqan::String >&; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet >, seqan::Owner<> >&; TSource = seqan::String >&]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value - | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const seqan::String >&; TExpand = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String >; TTargetSpec = seqan::Alloc<>; TValue = const seqan::String >&; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet >, seqan::Owner<> >&; TSource = seqan::String >&]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value - | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = seqan::String >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const char (&)[5]; TExpand = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String >; TTargetSpec = seqan::Alloc<>; TValue = const char (&)[5]; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = char [5]; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet >, seqan::Owner<> >&; TSource = char (&)[5]]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2259:16: required from 'void StringSetTestCommon__SuffixOnValue::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2249:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TGapScheme = seqan::Tag; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, unsigned int, const seqan::DPProfile_, TGapSpec, seqan::TracebackOn, TExecPolicy>&) [with TTraceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSeedSet = seqan::String > >; TSequenceH = seqan::String, seqan::Alloc<> >; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; TFreeEndGaps = seqan::FreeEndGaps_<>; TDPMatrixLocation = seqan::Tag; TGapSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >; TExecPolicy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(seqan::StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = seqan::TraceSegment_; TStringSetSpec = seqan::Owner<>; TSeeds = seqan::String > >; TSequenceH = seqan::String, seqan::Alloc<> >; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag; TGapsPlacement = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:419:41: required from 'TScoreValue seqan::bandedChainAlignment(seqan::String, TStringSpec>&, const seqan::StringSet&, const TSeeds&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int) [with TSize = unsigned int; TFragmentSpec = seqan::ExactFragment<>; TStringSpec = seqan::Alloc<>; TSequence = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Owner<>; TSeeds = seqan::String > >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:1950:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_fragments_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2526:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] - 647 | return Iter >(container(left), hostIterator(left) - right); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' - 129 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Packed<> >, seqan::Alloc<> >; TValue = const seqan::String, seqan::Packed<> >&; TExpand = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String, seqan::Packed<> >; TTargetSpec = seqan::Alloc<>; TValue = const seqan::String, seqan::Packed<> >&; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String, seqan::Packed<> >; TString2 = seqan::String, seqan::Packed<> >; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >&; TSource = seqan::String, seqan::Packed<> >&]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] - 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value - | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = seqan::String, seqan::Packed<> >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = seqan::String, seqan::Packed<> >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Packed<> >, seqan::Alloc<> >; TValue = const char (&)[5]; TExpand = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String, seqan::Packed<> >; TTargetSpec = seqan::Alloc<>; TValue = const char (&)[5]; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String, seqan::Packed<> >; TString2 = char [5]; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >&; TSource = char (&)[5]]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2259:16: required from 'void StringSetTestCommon__SuffixOnValue::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2249:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = std::vector]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = std::vector]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] - 1769 | ref = 'G'; - | ~~~~^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' - 69 | CountingChar(CountingChar const & other) : value(other.value) - | ^~~~~~~~~~~~ /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = std::vector]': /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = std::vector]' /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here @@ -66915,14 +67018,15 @@ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = seqan::String >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const char (&)[5]; TExpand = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String >; TTargetSpec = seqan::Alloc<>; TValue = const char (&)[5]; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = char [5]; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet >, seqan::Owner<> >&; TSource = char (&)[5]]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2259:16: required from 'void StringSetTestCommon__SuffixOnValue::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2249:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = const seqan::String >&]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = const seqan::String >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const seqan::String >&; TExpand = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String >; TTargetSpec = seqan::Alloc<>; TValue = const seqan::String >&; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet >, seqan::Owner<> >&; TSource = seqan::String >&]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -66935,14 +67039,15 @@ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = seqan::String >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const char (&)[5]; TExpand = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String >; TTargetSpec = seqan::Alloc<>; TValue = const char (&)[5]; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = char [5]; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet >, seqan::Owner<> >&; TSource = char (&)[5]]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2259:16: required from 'void StringSetTestCommon__SuffixOnValue::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2249:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = const seqan::String >&]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = const seqan::String >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const seqan::String >&; TExpand = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String >; TTargetSpec = seqan::Alloc<>; TValue = const seqan::String >&; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet >, seqan::Owner<> >&; TSource = seqan::String >&]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -66955,14 +67060,15 @@ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = seqan::String, seqan::Packed<> >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = seqan::String, seqan::Packed<> >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Packed<> >, seqan::Alloc<> >; TValue = const char (&)[5]; TExpand = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String, seqan::Packed<> >; TTargetSpec = seqan::Alloc<>; TValue = const char (&)[5]; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String, seqan::Packed<> >; TString2 = char [5]; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >&; TSource = char (&)[5]]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2259:16: required from 'void StringSetTestCommon__SuffixOnValue::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:2249:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Packed<> >, seqan::Alloc<> >; TValue = const seqan::String, seqan::Packed<> >&; TExpand = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String, seqan::Packed<> >; TTargetSpec = seqan::Alloc<>; TValue = const seqan::String, seqan::Packed<> >&; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String, seqan::Packed<> >; TString2 = seqan::String, seqan::Packed<> >; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >&; TSource = seqan::String, seqan::Packed<> >&]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -66972,6 +67078,34 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TGapScheme = seqan::Tag; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1336:38: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, unsigned int, const seqan::DPProfile_, TGapSpec, seqan::TracebackOn, TExecPolicy>&) [with TTraceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSeedSet = seqan::String > >; TSequenceH = seqan::String, seqan::Alloc<> >; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; TFreeEndGaps = seqan::FreeEndGaps_<>; TDPMatrixLocation = seqan::Tag; TGapSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >; TExecPolicy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(seqan::StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = seqan::TraceSegment_; TStringSetSpec = seqan::Owner<>; TSeeds = seqan::String > >; TSequenceH = seqan::String, seqan::Alloc<> >; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag; TGapsPlacement = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:419:41: required from 'TScoreValue seqan::bandedChainAlignment(seqan::String, TStringSpec>&, const seqan::StringSet&, const TSeeds&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int) [with TSize = unsigned int; TFragmentSpec = seqan::ExactFragment<>; TStringSpec = seqan::Alloc<>; TSequence = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Owner<>; TSeeds = seqan::String > >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:1950:42: required from 'void SEQAN_TEST_test_banded_chain_alignment_fragments_linear_global_two_scores() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:2526:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>&)' is deprecated [-Wdeprecated-copy] + 647 | return Iter >(container(left), hostIterator(left) - right); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:97, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + 129 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' @@ -67073,95 +67207,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, unsigned int, const seqan::DPProfile_, TGapSpec, seqan::TracebackOn, TExecPolicy>&) [with TTraceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSeedSet = seqan::String >, seqan::Alloc<> >; TSequenceH = seqan::String, seqan::Alloc<> >; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; TFreeEndGaps = seqan::FreeEndGaps_<>; TDPMatrixLocation = seqan::Tag; TGapSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >; TExecPolicy = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(seqan::StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = seqan::TraceSegment_; TStringSetSpec = seqan::Owner<>; TSeeds = seqan::String >, seqan::Alloc<> >; TSequenceH = seqan::String, seqan::Alloc<> >; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag; TGapsPlacement = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(seqan::Align&, const TSeeds&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int) [with TSequence = seqan::String, seqan::Alloc<> >; TAlignSpec = seqan::Tag; TSeeds = seqan::String >, seqan::Alloc<> >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(seqan::Align&, const TSeeds&, const seqan::Score&, unsigned int) [with TSequence = seqan::String, seqan::Alloc<> >; TAlignSpec = seqan::Tag; TSeeds = seqan::String >, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1012:35: required from 'void SEQAN_TEST_test_banded_chain_alignment_issue_1020() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1109:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:41: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = const seqan::String >&]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = const seqan::String >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const seqan::String >&; TExpand = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String >; TTargetSpec = seqan::Alloc<>; TValue = const seqan::String >&; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet >, seqan::Owner<> >&; TSource = seqan::String >&]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = char; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = const seqan::String >&]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String >*; TParam = const seqan::String >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const seqan::String >&; TExpand = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String >; TTargetSpec = seqan::Alloc<>; TValue = const seqan::String >&; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet >, seqan::Owner<> >&; TSource = seqan::String >&]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String >::String(const seqan::String >&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = short int; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::String, seqan::Packed<> >*; TParam = const seqan::String, seqan::Packed<> >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String, seqan::Packed<> >, seqan::Alloc<> >; TValue = const seqan::String, seqan::Packed<> >&; TExpand = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::String, seqan::Packed<> >; TTargetSpec = seqan::Alloc<>; TValue = const seqan::String, seqan::Packed<> >&; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_set_owner.h:174:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String, seqan::Packed<> >; TString2 = seqan::String, seqan::Packed<> >; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >&; TSource = seqan::String, seqan::Packed<> >&]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1826:16: required from 'void testStringSetValue(TStringSet&) [with TStringSet = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1898:23: required from 'void StringSetTestCommon__Value::runTest() [with SEQAN_TParam = seqan::StringSet, seqan::Packed<> >, seqan::Owner<> >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:1893:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'seqan::String, seqan::Packed<> >::String(const seqan::String, seqan::Packed<> >&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:110, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_string_set.h:43, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_stringset_v2.cpp:42: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String, seqan::Packed<> >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = seqan::SimpleType; THostspec = seqan::Alloc<>]' - 163 | String & operator =(String const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -67226,6 +67271,61 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1264:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_impl.h:1319:47: required from 'TScoreValue seqan::_computeAlignment(TTraceSet&, const TSeedSet&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, unsigned int, const seqan::DPProfile_, TGapSpec, seqan::TracebackOn, TExecPolicy>&) [with TTraceSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSeedSet = seqan::String >, seqan::Alloc<> >; TSequenceH = seqan::String, seqan::Alloc<> >; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; TFreeEndGaps = seqan::FreeEndGaps_<>; TDPMatrixLocation = seqan::Tag; TGapSpec = seqan::Tag; TTracebackConfig = seqan::TracebackConfig_, seqan::Tag >; TExecPolicy = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment_profile.h:258:33: required from 'TScoreValue seqan::_setupAndRunBandedChainAlignment(seqan::StringSet, TStringSetSpec>&, const TSeeds&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int, const TGapsPlacement&) [with TTraceSegment = seqan::TraceSegment_; TStringSetSpec = seqan::Owner<>; TSeeds = seqan::String >, seqan::Alloc<> >; TSequenceH = seqan::String, seqan::Alloc<> >; TSequenceV = seqan::String, seqan::Alloc<> >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag; TGapsPlacement = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:201:41: required from 'TScoreValue seqan::bandedChainAlignment(seqan::Align&, const TSeeds&, const seqan::Score&, const seqan::Score&, const seqan::AlignConfig&, unsigned int) [with TSequence = seqan::String, seqan::Alloc<> >; TAlignSpec = seqan::Tag; TSeeds = seqan::String >, seqan::Alloc<> >; TScoreValue = int; TScoreSpecAnchor = seqan::Tag; TScoreSpecGap = seqan::Tag; bool TFirstRow = false; bool TFirstColumn = false; bool TLastColumn = false; bool TLastRow = false; TACSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/seeds/banded_chain_alignment.h:245:32: required from 'TScoreValue seqan::bandedChainAlignment(seqan::Align&, const TSeeds&, const seqan::Score&, unsigned int) [with TSequence = seqan::String, seqan::Alloc<> >; TAlignSpec = seqan::Tag; TSeeds = seqan::String >, seqan::Alloc<> >; TScoreValue = int; TScoreSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1012:35: required from 'void SEQAN_TEST_test_banded_chain_alignment_issue_1020() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:1109:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:41: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] + 1769 | ref = 'G'; + | ~~~~^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' + 69 | CountingChar(CountingChar const & other) : value(other.value) + | ^~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] + 1371 | val = 'A'; + | ~~~~^~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' + 69 | CountingChar(CountingChar const & other) : value(other.value) + | ^~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] + 1062 | val = 'A'; + | ~~~~^~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' + 69 | CountingChar(CountingChar const & other) : value(other.value) + | ^~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/seeds/test_align_banded_chain_impl.cpp:41: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]' @@ -67250,8 +67350,8 @@ 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = seqan::String >]' /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1769 | ref = 'G'; @@ -67260,8 +67360,8 @@ /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1371 | val = 'A'; @@ -67269,8 +67369,8 @@ /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1062 | val = 'A'; @@ -67278,6 +67378,26 @@ /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] + 1769 | ref = 'G'; + | ~~~~^~~~~ +In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' + 69 | CountingChar(CountingChar const & other) : value(other.value) + | ^~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] + 1371 | val = 'A'; + | ~~~~^~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' + 69 | CountingChar(CountingChar const & other) : value(other.value) + | ^~~~~~~~~~~~ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' @@ -67298,6 +67418,15 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] + 1062 | val = 'A'; + | ~~~~^~~~~ +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' + 69 | CountingChar(CountingChar const & other) : value(other.value) + | ^~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/seeds/test_banded_chain_alignment_interface.cpp:40: @@ -67387,35 +67516,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = seqan::String >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] - 1769 | ref = 'G'; - | ~~~~^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' - 69 | CountingChar(CountingChar const & other) : value(other.value) - | ^~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] - 1371 | val = 'A'; - | ~~~~^~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' - 69 | CountingChar(CountingChar const & other) : value(other.value) - | ^~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] - 1062 | val = 'A'; - | ~~~~^~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' - 69 | CountingChar(CountingChar const & other) : value(other.value) - | ^~~~~~~~~~~~ [ 22%] Linking CXX executable ../../bin/test_seeds_seed_set_base cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_seed_set_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_seed_set_base.dir/test_seeds_seed_set_base.cpp.o -o ../../bin/test_seeds_seed_set_base -lrt -lz -lbz2 @@ -67432,19 +67532,8 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 22%] Building CXX object tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/test_sequence_journaled.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence_journaled && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_sequence_journaled.dir/test_sequence_journaled.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.cpp -In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceValue(TString&) [with TString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1810:22: required from 'void StringTestCommon__Value::runTest() [with SEQAN_TParam = seqan::String >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1805:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1769:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] - 1769 | ref = 'G'; - | ~~~~^~~~~ -In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' - 69 | CountingChar(CountingChar const & other) : value(other.value) - | ^~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1371 | val = 'A'; @@ -67452,8 +67541,8 @@ /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1062 | val = 'A'; @@ -67513,8 +67602,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1371 | val = 'A'; @@ -67522,8 +67611,8 @@ /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] 1062 | val = 'A'; @@ -67531,6 +67620,20 @@ /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = CountingChar; TSource = char; typename seqan::DisableIf > >::Type = void]': +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:785:15: required from 'void testSequenceOperatorAssign(TString&) [with TString = std::__cxx11::list]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:795:31: required from 'void StringTestCommon__OperatorAssign::runTest() [with SEQAN_TParam = std::__cxx11::list]' +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:790:1: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] + 118 | target = source; + | ~~~~~~~^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: +/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' + 69 | CountingChar(CountingChar const & other) : value(other.value) + | ^~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -67593,24 +67696,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceFront(TString&) [with TString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1393:22: required from 'void StringTestCommon__Front::runTest() [with SEQAN_TParam = seqan::String >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1388:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1371:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] - 1371 | val = 'A'; - | ~~~~^~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' - 69 | CountingChar(CountingChar const & other) : value(other.value) - | ^~~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h: In instantiation of 'void testSequenceBack(TString&) [with TString = seqan::String >]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1084:21: required from 'void StringTestCommon__Back::runTest() [with SEQAN_TParam = seqan::String >]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1079:1: required from here -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:1062:9: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] - 1062 | val = 'A'; - | ~~~~^~~~~ -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' - 69 | CountingChar(CountingChar const & other) : value(other.value) - | ^~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -67639,20 +67724,6 @@ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = CountingChar; TSource = char; typename seqan::DisableIf > >::Type = void]': -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:785:15: required from 'void testSequenceOperatorAssign(TString&) [with TString = std::__cxx11::list]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:795:31: required from 'void StringTestCommon__OperatorAssign::runTest() [with SEQAN_TParam = std::__cxx11::list]' -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:790:1: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'constexpr CountingChar& CountingChar::operator=(const CountingChar&)' is deprecated [-Wdeprecated-copy] - 118 | target = source; - | ~~~~~~~^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:40: -/build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' - 69 | CountingChar(CountingChar const & other) : value(other.value) - | ^~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence_v2.cpp:37: /build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = CountingChar; TSource = CountingChar; typename seqan::DisableIf > >::Type = void]': /build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:702:11: required from 'void seqan::assignValue(T&, TPos, const TValue&) [with T = std::__cxx11::list; TValue = CountingChar; TPos = int]' /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:937:16: required from 'void testSequenceAssignValue(TString&) [with TString = std::__cxx11::list]' @@ -67665,26 +67736,6 @@ /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.cpp:37: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::__cxx11::basic_stringstream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence_journaled/sequence_journaled.h:385:20: required from 'TStream& seqan::operator<<(TStream&, const seqan::String >&) [with TStream = std::__cxx11::basic_stringstream; TValue = char; THostSpec = seqan::Alloc<>; TJournalSpec = seqan::SortedArray; TBufferSpec = seqan::Alloc<>]' -/build/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.h:70:14: required from 'void testJournaledStringAssign(const TStringJournalSpec&) [with TStringJournalSpec = seqan::SortedArray]' -/build/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.h:1179:30: required from 'void SEQAN_TEST_test_sequence_journaled_sorted_array_assign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' -/build/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.cpp:46:5: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.cpp:38: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:92, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:43, @@ -67877,6 +67928,26 @@ /build/seqan2-2.4.0+dfsg/tests/sequence/test_sequence.h:69:5: note: because 'CountingChar' has user-provided 'CountingChar::CountingChar(const CountingChar&)' 69 | CountingChar(CountingChar const & other) : value(other.value) | ^~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.cpp:37: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::__cxx11::basic_stringstream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence_journaled/sequence_journaled.h:385:20: required from 'TStream& seqan::operator<<(TStream&, const seqan::String >&) [with TStream = std::__cxx11::basic_stringstream; TValue = char; THostSpec = seqan::Alloc<>; TJournalSpec = seqan::SortedArray; TBufferSpec = seqan::Alloc<>]' +/build/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.h:70:14: required from 'void testJournaledStringAssign(const TStringJournalSpec&) [with TStringJournalSpec = seqan::SortedArray]' +/build/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.h:1179:30: required from 'void SEQAN_TEST_test_sequence_journaled_sorted_array_assign() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' +/build/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.cpp:46:5: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/tests/sequence_journaled/test_sequence_journaled.cpp:38: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -68134,6 +68205,22 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 23%] Building CXX object tests/store/CMakeFiles/test_store.dir/test_store.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/store && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_store.dir/test_store.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/store/test_store.cpp +[ 23%] Linking CXX executable ../../bin/test_sequence +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequence.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_sequence.dir/test_sequence.cpp.o -o ../../bin/test_sequence -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 23%] Built target test_sequence +make -f tests/stream/CMakeFiles/test_stream.dir/build.make tests/stream/CMakeFiles/test_stream.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/stream /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream/CMakeFiles/test_stream.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream/CMakeFiles/test_stream.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream/CMakeFiles/test_stream.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream/CMakeFiles/test_stream.dir/depend.internal". +Scanning dependencies of target test_stream +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/stream/CMakeFiles/test_stream.dir/build.make tests/stream/CMakeFiles/test_stream.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 23%] Building CXX object tests/stream/CMakeFiles/test_stream.dir/test_stream.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_stream.dir/test_stream.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/stream/test_stream.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_debug.h:52, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:49, from /build/seqan2-2.4.0+dfsg/tests/statistics/test_statistics.cpp:37: @@ -68171,22 +68258,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 23%] Linking CXX executable ../../bin/test_sequence -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequence.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_sequence.dir/test_sequence.cpp.o -o ../../bin/test_sequence -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 23%] Built target test_sequence -make -f tests/stream/CMakeFiles/test_stream.dir/build.make tests/stream/CMakeFiles/test_stream.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/stream /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream/CMakeFiles/test_stream.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream/CMakeFiles/test_stream.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream/CMakeFiles/test_stream.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream/CMakeFiles/test_stream.dir/depend.internal". -Scanning dependencies of target test_stream -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/stream/CMakeFiles/test_stream.dir/build.make tests/stream/CMakeFiles/test_stream.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 23%] Building CXX object tests/stream/CMakeFiles/test_stream.dir/test_stream.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_stream.dir/test_stream.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/stream/test_stream.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:84, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, from /build/seqan2-2.4.0+dfsg/include/seqan/statistics.h:41, @@ -69538,22 +69609,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 23%] Building CXX object tests/translation/CMakeFiles/test_translation.dir/test_translation.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/translation && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_translation.dir/test_translation.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp -[ 24%] Linking CXX executable ../../bin/test_tabix_io -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/tabix_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tabix_io.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_tabix_io.dir/test_tabix_io.cpp.o -o ../../bin/test_tabix_io -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 24%] Built target test_tabix_io -make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/ucsc_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/depend.internal". -Scanning dependencies of target test_ucsc_io -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 24%] Building CXX object tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/test_ucsc_io.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_ucsc_io.dir/test_ucsc_io.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/translation/test_translation.cpp:37: @@ -69839,6 +69894,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +[ 24%] Linking CXX executable ../../bin/test_tabix_io +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/tabix_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tabix_io.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_tabix_io.dir/test_tabix_io.cpp.o -o ../../bin/test_tabix_io -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 24%] Built target test_tabix_io +make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/ucsc_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/depend.internal". +Scanning dependencies of target test_ucsc_io +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 24%] Building CXX object tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/test_ucsc_io.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/test_ucsc_io.dir/test_ucsc_io.cpp.o -c /build/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/tests/ucsc_io/test_ucsc_io.cpp:40: @@ -70053,11 +70124,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 25%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/unassigned_or_unused/tutorials_custim_io/solution3.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/unassigned_or_unused/tutorials_custim_io/solution3.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution3.cpp -[ 25%] Linking CXX executable ../../bin/test_stringset_v2 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_stringset_v2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o -o ../../bin/test_stringset_v2 -lrt -lz -lbz2 +[ 25%] Linking CXX executable ../../bin/test_translation +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/translation && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_translation.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_translation.dir/test_translation.cpp.o -o ../../bin/test_translation -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 25%] Built target test_stringset_v2 +[ 25%] Built target test_translation make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/DependInfo.cmake --color= @@ -70073,10 +70144,13 @@ cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/unassigned_or_unused/tutorials_custim_io/solution3.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 25%] Linking CXX executable ../../bin/test_stringset_v2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_stringset_v2.dir/link.txt --verbose=1 [ 25%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution3 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/DependInfo.cmake --color= +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_stringset_v2.dir/test_stringset_v2.cpp.o -o ../../bin/test_stringset_v2 -lrt -lz -lbz2 Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/depend.internal". Scanning dependencies of target demo_unassigned_or_unused_tutorials_custim_io_example1 @@ -70085,11 +70159,8 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 25%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/unassigned_or_unused/tutorials_custim_io/example1.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/unassigned_or_unused/tutorials_custim_io/example1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/example1.cpp -[ 25%] Linking CXX executable ../../bin/test_translation -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/translation && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_translation.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_translation.dir/test_translation.cpp.o -o ../../bin/test_translation -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 25%] Built target test_translation +[ 25%] Built target test_stringset_v2 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/DependInfo.cmake --color= @@ -70117,19 +70188,19 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 25%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/unassigned_or_unused/tutorial_sequence/replace_as.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/unassigned_or_unused/tutorial_sequence/replace_as.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_sequence/replace_as.cpp +[ 25%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo -lrt -lz -lbz2 [ 25%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/unassigned_or_unused/tutorials_custim_io/parse_gff2.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 25%] Built target demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 +[ 25%] Built target demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/DependInfo.cmake --color= -[ 25%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/link.txt --verbose=1 Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/depend.internal". -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/unassigned_or_unused/tutorial_sequence/sequence_iterator_demo.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo -lrt -lz -lbz2 Scanning dependencies of target demo_unassigned_or_unused_tutorial_sequence_count_generic_characters make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build @@ -70137,7 +70208,7 @@ [ 25%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 25%] Built target demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo +[ 25%] Built target demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/DependInfo.cmake --color= @@ -70152,12 +70223,9 @@ [ 25%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/unassigned_or_unused/tutorial_sequence/count_generic_characters.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters -lrt -lz -lbz2 -[ 25%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_replace_as -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 25%] Built target demo_unassigned_or_unused_tutorial_sequence_count_generic_characters make -f demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/depend -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/unassigned_or_unused/tutorial_sequence/replace_as.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_replace_as -lrt -lz -lbz2 make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/depend.internal". @@ -70168,6 +70236,9 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 25%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/unassigned_or_unused/segmentalignment.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/unassigned_or_unused/segmentalignment.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp +[ 25%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_replace_as +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/unassigned_or_unused/tutorial_sequence/replace_as.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_replace_as -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 25%] Built target demo_unassigned_or_unused_tutorial_sequence_replace_as make -f demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/depend @@ -70499,31 +70570,9 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' @@ -70536,14 +70585,18 @@ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -70551,12 +70604,12 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:25:36: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -70579,33 +70632,26 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:25:36: required from here + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -70625,29 +70671,37 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long unsigned int]': -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ofstream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = unsigned int; TPos = long int; TNum = int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:214:90: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 773 | Iter > > result = lhs; - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 775 | return result; - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' @@ -70661,53 +70715,77 @@ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/parse_lm_stellar.cpp:39: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:25:36: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:25:36: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -70717,11 +70795,20 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' @@ -70751,6 +70838,52 @@ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long unsigned int]': +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ofstream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ofstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = unsigned int; TPos = long int; TNum = int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:214:90: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 773 | Iter > > result = lhs; + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 775 | return result; + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ofstream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' @@ -70843,37 +70976,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:25:36: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, @@ -70933,37 +71035,6 @@ | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:25:36: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, @@ -71054,70 +71125,40 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const seqan::StringSet > >&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TFileNames = const char*]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:134:58: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const seqan::Tag&) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(seqan::Gaps >&, TPosition, TCount) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String, seqan::Alloc<> >; TPosition = long int; TCount = long int]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = seqan::AlignedReadStoreElement, void>*; TPos = long int; TSize = long int; TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = seqan::Gaps, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGapsPW = seqan::Gaps, seqan::AnchorGaps, seqan::Alloc<> >, seqan::InfixSegment> > >; TReadGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedReadIter = seqan::AlignedReadStoreElement, void>*; TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:142:31: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 773 | Iter > > result = lhs; - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 775 | return result; +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:40, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -71142,83 +71183,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Holder >::THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:169:26: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:142:31: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Holder >::THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:180:26: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String, seqan::Alloc<> >; seqan::Gaps >::TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:142:31: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index, seqan::Alloc<> > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:37:48: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:40, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:37, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:3: @@ -71327,6 +71291,32 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const seqan::Tag&) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(seqan::Gaps >&, TPosition, TCount) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String, seqan::Alloc<> >; TPosition = long int; TCount = long int]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = seqan::AlignedReadStoreElement, void>*; TPos = long int; TSize = long int; TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = seqan::Gaps, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGapsPW = seqan::Gaps, seqan::AnchorGaps, seqan::Alloc<> >, seqan::InfixSegment> > >; TReadGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedReadIter = seqan::AlignedReadStoreElement, void>*; TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:142:31: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 773 | Iter > > result = lhs; + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 775 | return result; + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:3: @@ -71408,6 +71398,87 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const seqan::StringSet > >&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TFileNames = const char*]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:134:58: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Holder >::THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:169:26: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:142:31: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Holder >::THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:180:26: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String, seqan::Alloc<> >; seqan::Gaps >::TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:142:31: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sam2svg.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/segmentalignment.cpp:3: @@ -71875,11 +71946,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 26%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/unassigned_or_unused/modifier_modreverse.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/unassigned_or_unused/modifier_modreverse.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/modifier_modreverse.cpp -[ 26%] Linking CXX executable ../bin/demo_unassigned_or_unused_sample_seqs -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/unassigned_or_unused/sample_seqs.cpp.o -o ../bin/demo_unassigned_or_unused_sample_seqs -lrt -lz -lbz2 +[ 26%] Linking CXX executable ../bin/demo_unassigned_or_unused_modifier_modreverse +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/unassigned_or_unused/modifier_modreverse.cpp.o -o ../bin/demo_unassigned_or_unused_modifier_modreverse -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 26%] Built target demo_unassigned_or_unused_sample_seqs +[ 26%] Built target demo_unassigned_or_unused_modifier_modreverse make -f demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/DependInfo.cmake --color= @@ -71889,13 +71960,13 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 26%] Linking CXX executable ../bin/demo_unassigned_or_unused_modifier_modreverse -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/link.txt --verbose=1 [ 26%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/unassigned_or_unused/index_qgram_counts.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/unassigned_or_unused/index_qgram_counts.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_qgram_counts.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/unassigned_or_unused/modifier_modreverse.cpp.o -o ../bin/demo_unassigned_or_unused_modifier_modreverse -lrt -lz -lbz2 +[ 26%] Linking CXX executable ../bin/demo_unassigned_or_unused_sample_seqs +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/unassigned_or_unused/sample_seqs.cpp.o -o ../bin/demo_unassigned_or_unused_sample_seqs -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 26%] Built target demo_unassigned_or_unused_modifier_modreverse +[ 26%] Built target demo_unassigned_or_unused_sample_seqs make -f demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/DependInfo.cmake --color= @@ -71989,6 +72060,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +[ 26%] Linking CXX executable ../../bin/test_seeds_align_banded_chain_impl +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_align_banded_chain_impl.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o -o ../../bin/test_seeds_align_banded_chain_impl -lrt -lz -lbz2 [ 26%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_qgram_counts cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/unassigned_or_unused/index_qgram_counts.cpp.o -o ../bin/demo_unassigned_or_unused_index_qgram_counts -lrt -lz -lbz2 @@ -72003,13 +72077,13 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 26%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/unassigned_or_unused/index_mums.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_index_mums.dir/unassigned_or_unused/index_mums.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp [ 26%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_node_predicate cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/unassigned_or_unused/index_node_predicate.cpp.o -o ../bin/demo_unassigned_or_unused_index_node_predicate -lrt -lz -lbz2 -[ 26%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/unassigned_or_unused/index_mums.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_index_mums.dir/unassigned_or_unused/index_mums.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 26%] Built target demo_unassigned_or_unused_index_node_predicate +[ 26%] Built target test_seeds_align_banded_chain_impl make -f demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/DependInfo.cmake --color= @@ -72019,13 +72093,10 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 26%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/unassigned_or_unused/index_lcp.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/unassigned_or_unused/index_lcp.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp -[ 26%] Linking CXX executable ../../bin/test_seeds_align_banded_chain_impl -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_align_banded_chain_impl.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_align_banded_chain_impl.dir/test_align_banded_chain_impl.cpp.o -o ../../bin/test_seeds_align_banded_chain_impl -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 26%] Built target test_seeds_align_banded_chain_impl +[ 26%] Built target demo_unassigned_or_unused_index_node_predicate make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/DependInfo.cmake --color= @@ -72055,6 +72126,15 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -72135,15 +72215,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -72190,18 +72261,20 @@ | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ @@ -72209,25 +72282,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -72235,25 +72309,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -72261,25 +72336,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -72287,25 +72363,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -72313,25 +72390,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ @@ -72339,26 +72417,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ @@ -72366,29 +72444,54 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 517 | *cb.cur = item; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 517 | *cb.cur = item; - | ~~~~~~~~^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -72399,20 +72502,20 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -72420,26 +72523,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -72447,26 +72550,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -72474,26 +72577,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -72501,54 +72604,27 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 534 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, @@ -72556,106 +72632,24 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 311 | buffer[pool.handlerArgs(Val_)] = Val_; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 517 | *cb.cur = item; - | ~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -72663,26 +72657,25 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -72690,26 +72683,25 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -72717,26 +72709,25 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -72744,84 +72735,82 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 202 | *refNext = *I; - | ~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 203 | *I = *refPrev; - | ~~~^~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 243 | *cur = *refPrev; - | ~~~~~^~~~~~~~~~ + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 311 | buffer[pool.handlerArgs(Val_)] = Val_; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 517 | *cb.cur = item; + | ~~~~~~~~^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -72833,20 +72822,20 @@ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, @@ -72854,26 +72843,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, @@ -72881,55 +72870,55 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 311 | buffer[pool.handlerArgs(Val_)] = Val_; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:416:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 517 | *cb.cur = item; - | ~~~~~~~~^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 202 | *refNext = *I; + | ~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -72938,22 +72927,50 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 203 | *I = *refPrev; + | ~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 243 | *cur = *refPrev; + | ~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -72961,26 +72978,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -72988,26 +73005,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -73015,26 +73032,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -73042,29 +73059,56 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 311 | buffer[pool.handlerArgs(Val_)] = Val_; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -73076,19 +73120,46 @@ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 517 | *cb.cur = item; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 311 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ @@ -73096,26 +73167,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 517 | *cb.cur = item; | ~~~~~~~~^~~~~~ @@ -73123,26 +73194,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:376:49: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 762 | *cur = Val_; | ~~~~~^~~~~~ @@ -73150,26 +73221,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:447:21: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:465:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ @@ -73177,13 +73248,13 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ @@ -73191,13 +73262,13 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ @@ -73205,135 +73276,137 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 202 | *refNext = *I; - | ~~~~~~~~~^~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 311 | buffer[pool.handlerArgs(Val_)] = Val_; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 203 | *I = *refPrev; - | ~~~^~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 517 | *cb.cur = item; + | ~~~~~~~~^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 243 | *cur = *refPrev; - | ~~~~~^~~~~~~~~~ + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 202 | *refNext = *I; + | ~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 311 | buffer[pool.handlerArgs(Val_)] = Val_; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 203 | *I = *refPrev; + | ~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TOut12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:218:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 517 | *cb.cur = item; - | ~~~~~~~~^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 243 | *cur = *refPrev; + | ~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +[ 26%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_find +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_find.dir/link.txt --verbose=1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ @@ -73341,13 +73414,13 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ @@ -73355,13 +73428,13 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ @@ -73369,26 +73442,32 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_find.dir/unassigned_or_unused/index_find.cpp.o -o ../bin/demo_unassigned_or_unused_index_find -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 26%] Built target demo_unassigned_or_unused_index_find +make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:302:21: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger7.h:320:13: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ @@ -73396,13 +73475,13 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ @@ -73410,13 +73489,13 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ @@ -73424,26 +73503,34 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/depend.internal". +Scanning dependencies of target demo_unassigned_or_unused_file_speed +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 27%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/unassigned_or_unused/file_speed.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_file_speed.dir/unassigned_or_unused/file_speed.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_speed.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:556:50: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:744:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:870:24: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:329:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:22:60: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:23:34: required from here /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:202:30: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 202 | *refNext = *I; | ~~~~~~~~~^~~~ @@ -73451,13 +73538,13 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ @@ -73465,13 +73552,13 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:243:26: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 243 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ @@ -73479,26 +73566,10 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_mums.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_lcp.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 26%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_find -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_find.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_find.dir/unassigned_or_unused/index_find.cpp.o -o ../bin/demo_unassigned_or_unused_index_find -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 26%] Built target demo_unassigned_or_unused_index_find -make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/depend.internal". -Scanning dependencies of target demo_unassigned_or_unused_file_speed -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 27%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/unassigned_or_unused/file_speed.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_file_speed.dir/unassigned_or_unused/file_speed.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/file_speed.cpp [ 27%] Linking CXX executable ../bin/demo_unassigned_or_unused_file_speed cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_file_speed.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_file_speed.dir/unassigned_or_unused/file_speed.cpp.o -o ../bin/demo_unassigned_or_unused_file_speed -lrt -lz -lbz2 @@ -73723,11 +73794,14 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 27%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/unassigned_or_unused/benchmark_stream.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/unassigned_or_unused/benchmark_stream.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp +[ 27%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_lcp +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/unassigned_or_unused/index_lcp.cpp.o -o ../bin/demo_unassigned_or_unused_index_lcp -lrt -lz -lbz2 [ 27%] Linking CXX executable ../bin/demo_unassigned_or_unused_segmentalignment cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/unassigned_or_unused/segmentalignment.cpp.o -o ../bin/demo_unassigned_or_unused_segmentalignment -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 27%] Built target demo_unassigned_or_unused_segmentalignment +[ 27%] Built target demo_unassigned_or_unused_index_lcp make -f demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/DependInfo.cmake --color= @@ -73739,11 +73813,8 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 27%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/unassigned_or_unused/bamutil.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_bamutil.dir/unassigned_or_unused/bamutil.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bamutil.cpp -[ 27%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_lcp -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/unassigned_or_unused/index_lcp.cpp.o -o ../bin/demo_unassigned_or_unused_index_lcp -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 27%] Built target demo_unassigned_or_unused_index_lcp +[ 27%] Built target demo_unassigned_or_unused_segmentalignment make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/DependInfo.cmake --color= @@ -73772,7 +73843,7 @@ [ 29%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/unassigned_or_unused/bam_library_size.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/unassigned_or_unused/bam_library_size.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:44: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -73782,45 +73853,19 @@ 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:30: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:43: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:44: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:44: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' @@ -73831,41 +73876,14 @@ 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:30: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:43: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:44: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -73894,9 +73912,7 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:43: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' @@ -73908,9 +73924,7 @@ 443 | return me; | ^~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:43: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ @@ -73939,31 +73953,6 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:30: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, @@ -73989,31 +73978,6 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:30: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, @@ -74081,27 +74045,27 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:45: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:30: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:76:29: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:43: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:44: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -74110,7 +74074,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:45: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -74130,28 +74094,67 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 29%] Linking CXX executable ../bin/demo_unassigned_or_unused_file_format +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_file_format.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_file_format.dir/unassigned_or_unused/file_format.cpp.o -o ../bin/demo_unassigned_or_unused_file_format -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 29%] Built target demo_unassigned_or_unused_file_format +make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:45: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +Scanning dependencies of target demo_unassigned_or_unused_arg_align +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 29%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/unassigned_or_unused/arg_align.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_arg_align.dir/unassigned_or_unused/arg_align.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/arg_align.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:76:29: required from here +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:30: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:43: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_print_alignments.cpp:44: + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -74178,6 +74181,56 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:30: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bamutil.cpp:45: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': @@ -74201,7 +74254,9 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bamutil.cpp:43: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' @@ -74213,88 +74268,104 @@ 443 | return me; | ^~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bamutil.cpp:43: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:44: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:30: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:43: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:44: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:44: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bamutil.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bamutil.cpp:43: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:30: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:43: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:44: + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 29%] Linking CXX executable ../bin/demo_unassigned_or_unused_file_format -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_file_format.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_file_format.dir/unassigned_or_unused/file_format.cpp.o -o ../bin/demo_unassigned_or_unused_file_format -lrt -lz -lbz2 -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:43: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:280:30: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/bam_library_size.cpp:43: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 29%] Built target demo_unassigned_or_unused_file_format -make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/depend.internal". -Scanning dependencies of target demo_unassigned_or_unused_arg_align -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 29%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/unassigned_or_unused/arg_align.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_arg_align.dir/unassigned_or_unused/arg_align.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/arg_align.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/benchmark_stream.cpp:51: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ [ 29%] Linking CXX executable ../bin/demo_unassigned_or_unused_arg_align cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_arg_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_arg_align.dir/unassigned_or_unused/arg_align.cpp.o -o ../bin/demo_unassigned_or_unused_arg_align -lrt -lz -lbz2 @@ -74422,9 +74493,6 @@ [ 30%] Linking CXX executable ../bin/demo_tutorial_vcf_io_solution2 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_vcf_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_vcf_io_solution2.dir/tutorial/vcf_io/solution2.cpp.o -o ../bin/demo_tutorial_vcf_io_solution2 -lrt -lz -lbz2 -[ 30%] Linking CXX executable ../bin/demo_tutorial_string_sets_example_functionality_2 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/tutorial/string_sets/example_functionality_2.cpp.o -o ../bin/demo_tutorial_string_sets_example_functionality_2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 30%] Built target demo_tutorial_vcf_io_solution2 make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/depend @@ -74438,6 +74506,9 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 30%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/assignment_2_solution.cpp +[ 30%] Linking CXX executable ../bin/demo_tutorial_string_sets_example_functionality_2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/tutorial/string_sets/example_functionality_2.cpp.o -o ../bin/demo_tutorial_string_sets_example_functionality_2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 30%] Built target demo_tutorial_string_sets_example_functionality_2 make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/depend @@ -74470,7 +74541,10 @@ [ 30%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_2 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/tutorial/string_sets/assignment_2.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_2 -lrt -lz -lbz2 +[ 30%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_2_solution +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_2_solution -lrt -lz -lbz2 [ 30%] Built target demo_tutorial_string_sets_assignment_2 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' @@ -74483,9 +74557,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 30%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/tutorial/simple_rna_seq/genequant_solution5.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/tutorial/simple_rna_seq/genequant_solution5.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp -[ 30%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_2_solution -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_2_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 30%] Built target demo_tutorial_string_sets_assignment_2_solution make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/depend @@ -74671,6 +74742,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:61, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h: In instantiation of 'seqan::Iter > seqan::nodeDown(const seqan::Iter >&) [with TFragmentStore = const seqan::FragmentStore<>; TSpec = void]': +/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:146:38: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:853:50: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] + 853 | Iter > tmp(it); + | ^~~ +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = const seqan::FragmentStore<>; TSpec = void]' + 272 | operator = (Iter const &_origin) + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:855:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] + 855 | return tmp; + | ^~~ +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = const seqan::FragmentStore<>; TSpec = void]' + 272 | operator = (Iter const &_origin) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:2: @@ -74690,38 +74777,52 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:61, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h: In instantiation of 'seqan::Iter > seqan::nodeDown(const seqan::Iter >&) [with TFragmentStore = const seqan::FragmentStore<>; TSpec = void]': -/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:146:38: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:853:50: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] - 853 | Iter > tmp(it); - | ^~~ -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = const seqan::FragmentStore<>; TSpec = void]' - 272 | operator = (Iter const &_origin) - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:855:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] - 855 | return tmp; - | ^~~ -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = const seqan::FragmentStore<>; TSpec = void]' - 272 | operator = (Iter const &_origin) - | ^~~~~~~~ -[ 31%] Linking CXX executable ../bin/demo_unassigned_or_unused_benchmark_stream -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/unassigned_or_unused/benchmark_stream.cpp.o -o ../bin/demo_unassigned_or_unused_benchmark_stream -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 31%] Built target demo_unassigned_or_unused_benchmark_stream -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/depend.internal". -Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_solution2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 31%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution2.cpp +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TVertexDescriptor = unsigned int; TValue = long int; TCargo = unsigned int]': +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TValue = long int; TCargo = unsigned int]' +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1513:18: required from 'void seqan::findIntervals(seqan::String&, const seqan::IntervalTree&, TValue2, TValue2) [with TValue = long int; TCargo = unsigned int; TValue2 = long int]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:109:79: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1562:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] + 1562 | act_prop = property(pm, act_knot); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' + 288 | IntervalTreeNode(IntervalTreeNode const & other) : + | ^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] + 1575 | next_prop = property(pm, targetVertex(it)); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' + 288 | IntervalTreeNode(IntervalTreeNode const & other) : + | ^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1598:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] + 1598 | next_prop = property(pm, targetVertex(it)); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' + 288 | IntervalTreeNode(IntervalTreeNode const & other) : + | ^~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:2: @@ -74748,17 +74849,33 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TVertexDescriptor = unsigned int; TValue = long int; TCargo = unsigned int]': -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String, seqan::StorePointsOnly>, seqan::Alloc<> >; TValue = long int; TCargo = unsigned int]' -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1513:18: required from 'void seqan::findIntervals(seqan::String&, const seqan::IntervalTree&, TValue2, TValue2) [with TValue = long int; TCargo = unsigned int; TValue2 = long int]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:109:79: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1562:18: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] - 1562 | act_prop = property(pm, act_knot); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, @@ -74778,13 +74895,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' - 288 | IntervalTreeNode(IntervalTreeNode const & other) : - | ^~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution4.cpp:2: @@ -74816,61 +74926,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] - 1575 | next_prop = property(pm, targetVertex(it)); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' - 288 | IntervalTreeNode(IntervalTreeNode const & other) : - | ^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1598:27: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] - 1598 | next_prop = property(pm, targetVertex(it)); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' - 288 | IntervalTreeNode(IntervalTreeNode const & other) : - | ^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -75055,6 +75110,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 31%] Linking CXX executable ../bin/demo_unassigned_or_unused_benchmark_stream +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/unassigned_or_unused/benchmark_stream.cpp.o -o ../bin/demo_unassigned_or_unused_benchmark_stream -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -75102,6 +75160,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 31%] Built target demo_unassigned_or_unused_benchmark_stream +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/depend.internal". +Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_solution2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 31%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: @@ -75128,10 +75199,36 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const seqan::Tag&) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(seqan::Gaps >&, TPosition, TCount) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String, seqan::Alloc<> >; TPosition = long int; TCount = long int]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = seqan::AlignedReadStoreElement, void>*; TPos = long int; TSize = long int; TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = seqan::Gaps, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGapsPW = seqan::Gaps, seqan::AnchorGaps, seqan::Alloc<> >, seqan::InfixSegment> > >; TReadGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedReadIter = seqan::AlignedReadStoreElement, void>*; TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:29:37: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 773 | Iter > > result = lhs; + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 775 | return result; + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' /build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' @@ -75143,20 +75240,20 @@ /build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:31:37: required from here +/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:29:37: required from here /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' /build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' @@ -75168,46 +75265,20 @@ /build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:31:37: required from here +/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:29:37: required from here /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const seqan::Tag&) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(seqan::Gaps >&, TPosition, TCount) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String, seqan::Alloc<> >; TPosition = long int; TCount = long int]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = seqan::AlignedReadStoreElement, void>*; TPos = long int; TSize = long int; TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = seqan::Gaps, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGapsPW = seqan::Gaps, seqan::AnchorGaps, seqan::Alloc<> >, seqan::InfixSegment> > >; TReadGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedReadIter = seqan::AlignedReadStoreElement, void>*; TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:29:37: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 773 | Iter > > result = lhs; - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 775 | return result; - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' /build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' @@ -75219,20 +75290,20 @@ /build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:29:37: required from here +/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:31:37: required from here /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' /build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' @@ -75244,16 +75315,32 @@ /build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:29:37: required from here +/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:31:37: required from here /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution3.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution5.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +[ 31%] Linking CXX executable ../bin/demo_unassigned_or_unused_bamutil +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_bamutil.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_bamutil.dir/unassigned_or_unused/bamutil.cpp.o -o ../bin/demo_unassigned_or_unused_bamutil -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 31%] Built target demo_unassigned_or_unused_bamutil +make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/depend.internal". +Scanning dependencies of target demo_unassigned_or_unused_minimapper +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 31%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/unassigned_or_unused/minimapper.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_minimapper.dir/unassigned_or_unused/minimapper.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -75459,22 +75546,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 31%] Linking CXX executable ../bin/demo_unassigned_or_unused_bamutil -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_bamutil.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_bamutil.dir/unassigned_or_unused/bamutil.cpp.o -o ../bin/demo_unassigned_or_unused_bamutil -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 31%] Built target demo_unassigned_or_unused_bamutil -make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/depend.internal". -Scanning dependencies of target demo_unassigned_or_unused_minimapper -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 31%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/unassigned_or_unused/minimapper.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_minimapper.dir/unassigned_or_unused/minimapper.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/minimapper.cpp:36: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': @@ -76137,11 +76208,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 31%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/unassigned_or_unused/find_wild.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_find_wild.dir/unassigned_or_unused/find_wild.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/find_wild.cpp -[ 31%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution2 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution2 -lrt -lz -lbz2 +[ 31%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution5 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/tutorial/simple_rna_seq/genequant_solution5.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution5 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 31%] Built target demo_tutorial_simple_rna_seq_genequant_solution2 +[ 31%] Built target demo_tutorial_simple_rna_seq_genequant_solution5 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/DependInfo.cmake --color= @@ -76153,22 +76224,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 31%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/tutorial/simple_rna_seq/genequant_assignment4.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/tutorial/simple_rna_seq/genequant_assignment4.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp -[ 31%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution5 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/tutorial/simple_rna_seq/genequant_solution5.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution5 -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 31%] Built target demo_tutorial_simple_rna_seq_genequant_solution5 -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/depend.internal". -Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment3 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 31%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/tutorial/simple_rna_seq/genequant_assignment3.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/tutorial/simple_rna_seq/genequant_assignment3.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -76251,6 +76306,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 31%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/tutorial/simple_rna_seq/genequant_solution2.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution2 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -76298,6 +76356,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 31%] Built target demo_tutorial_simple_rna_seq_genequant_solution2 +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/depend.internal". +Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment3 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 31%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/tutorial/simple_rna_seq/genequant_assignment3.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/tutorial/simple_rna_seq/genequant_assignment3.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_solution1.cpp:2: @@ -76395,7 +76466,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -76406,14 +76477,14 @@ | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -76423,11 +76494,11 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGff_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:36:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -76449,25 +76520,26 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGff_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:39:60: required from here + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -76477,8 +76549,9 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGff_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGtf_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:36:60: required from here @@ -76498,43 +76571,33 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -76559,26 +76622,25 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGtf_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGff_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:36:60: required from here +/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:39:60: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -76588,12 +76650,12 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGtf_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:39:60: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -76610,44 +76672,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment3.cpp:2: @@ -76674,6 +76698,34 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGtf_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:39:60: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, @@ -76724,6 +76776,25 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment4.cpp:2: @@ -76957,45 +77028,45 @@ [ 31%] Linking CXX executable ../../bin/test_sequence_v2 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequence_v2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o -o ../../bin/test_sequence_v2 -lrt -lz -lbz2 -[ 31%] Linking CXX executable ../bin/demo_tutorial_sequences_example_segments +[ 32%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/tutorial/simple_rna_seq/genequant_solution1.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution1 -lrt -lz -lbz2 +[ 32%] Linking CXX executable ../bin/demo_tutorial_sequences_example_segments cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_segments.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_segments.dir/tutorial/sequences/example_segments.cpp.o -o ../bin/demo_tutorial_sequences_example_segments -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 31%] Built target demo_tutorial_sequences_example_segments +[ 32%] Built target demo_tutorial_simple_rna_seq_genequant_solution1 make -f demos/CMakeFiles/demo_tutorial_sequences_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_base.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_base.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_base.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_base.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_base.dir/depend.internal". +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_sequences_base make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_base.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 31%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_base.dir/tutorial/sequences/base.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_base.dir/tutorial/sequences/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/base.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 31%] Built target test_sequence_v2 +[ 32%] Built target demo_tutorial_sequences_example_segments make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/DependInfo.cmake --color= +[ 32%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_base.dir/tutorial/sequences/base.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_base.dir/tutorial/sequences/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/base.cpp +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/depend.internal". -Scanning dependencies of target demo_tutorial_sequences_assignment_5_solution -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 32%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/tutorial/sequences/assignment_5_solution.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/tutorial/sequences/assignment_5_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_5_solution.cpp -[ 33%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_solution1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/tutorial/simple_rna_seq/genequant_solution1.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_solution1 -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 33%] Built target demo_tutorial_simple_rna_seq_genequant_solution1 +[ 32%] Built target test_sequence_v2 make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/DependInfo.cmake --color= +Scanning dependencies of target demo_tutorial_sequences_assignment_5_solution +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/depend.internal". +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 33%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/tutorial/sequences/assignment_5_solution.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/tutorial/sequences/assignment_5_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_5_solution.cpp Scanning dependencies of target demo_tutorial_sequences_assignment_3 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build @@ -77076,19 +77147,19 @@ make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/DependInfo.cmake --color= +[ 33%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_3 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_3.dir/link.txt --verbose=1 Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/depend.internal". +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_3.dir/tutorial/sequences/assignment_3.cpp.o -o ../bin/demo_tutorial_sequences_assignment_3 -lrt -lz -lbz2 Scanning dependencies of target demo_tutorial_sequences_assignment_2_solution make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 33%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/tutorial/sequences/assignment_2_solution.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/tutorial/sequences/assignment_2_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_2_solution.cpp -[ 33%] Linking CXX executable ../bin/demo_tutorial_sequences_example_conversions_copy -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/tutorial/sequences/example_conversions_copy.cpp.o -o ../bin/demo_tutorial_sequences_example_conversions_copy -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 33%] Built target demo_tutorial_sequences_example_conversions_copy +[ 33%] Built target demo_tutorial_sequences_assignment_3 make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/DependInfo.cmake --color= @@ -77100,11 +77171,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 33%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/tutorial/sequences/assignment_1_solution.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/tutorial/sequences/assignment_1_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_1_solution.cpp -[ 33%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_3 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_3.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_3.dir/tutorial/sequences/assignment_3.cpp.o -o ../bin/demo_tutorial_sequences_assignment_3 -lrt -lz -lbz2 +[ 33%] Linking CXX executable ../bin/demo_tutorial_sequences_example_conversions_copy +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/tutorial/sequences/example_conversions_copy.cpp.o -o ../bin/demo_tutorial_sequences_example_conversions_copy -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 33%] Built target demo_tutorial_sequences_assignment_3 +[ 33%] Built target demo_tutorial_sequences_example_conversions_copy make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/DependInfo.cmake --color= @@ -77727,6 +77798,16 @@ [ 33%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_assignment4 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/tutorial/simple_rna_seq/genequant_assignment4.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_assignment4 -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/seeds/example1.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -77847,16 +77928,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 33%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/tutorial/seed_and_extend/solution5.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/tutorial/seed_and_extend/solution5.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution5.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/seeds/example1.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ [ 33%] Linking CXX executable ../bin/demo_tutorial_seeds_example1 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seeds_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seeds_example1.dir/tutorial/seeds/example1.cpp.o -o ../bin/demo_tutorial_seeds_example1 -lrt -lz -lbz2 @@ -77865,6 +77936,14 @@ make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/depend.internal". +Scanning dependencies of target demo_tutorial_seed_and_extend_solution2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 34%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:4: @@ -77875,14 +77954,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/depend.internal". -Scanning dependencies of target demo_tutorial_seed_and_extend_solution2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 34%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -78149,6 +78220,16 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution5.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution6.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': @@ -78172,16 +78253,6 @@ | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution5.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution2.cpp:4: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] @@ -78232,15 +78303,15 @@ cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/depend.internal". +[ 34%] Linking CXX executable ../bin/demo_tutorial_sequence_io_example1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_example1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_example1.dir/tutorial/sequence_io/example1.cpp.o -o ../bin/demo_tutorial_sequence_io_example1 -lrt -lz -lbz2 Scanning dependencies of target demo_tutorial_seed_and_extend_example5 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 34%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example5.cpp -[ 34%] Linking CXX executable ../bin/demo_tutorial_sequence_io_example1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_example1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_example1.dir/tutorial/sequence_io/example1.cpp.o -o ../bin/demo_tutorial_sequence_io_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 34%] Built target demo_tutorial_sequence_io_example1 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/depend @@ -78257,6 +78328,16 @@ [ 34%] Linking CXX executable ../bin/demo_tutorial_sequence_io_base cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_base.dir/tutorial/sequence_io/base.cpp.o -o ../bin/demo_tutorial_sequence_io_base -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example6.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 34%] Built target demo_tutorial_sequence_io_base make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/depend @@ -78270,16 +78351,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example3.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example6.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/sequence_length.cpp:5: @@ -78509,9 +78580,6 @@ [ 35%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example4 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/tutorial/seed_and_extend/example4.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example4 -lrt -lz -lbz2 -[ 35%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example5 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example5 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 35%] Built target demo_tutorial_seed_and_extend_example4 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/depend @@ -78519,10 +78587,13 @@ cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/depend.internal". +[ 35%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example5 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/link.txt --verbose=1 Scanning dependencies of target demo_tutorial_seed_and_extend_example1 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example5 -lrt -lz -lbz2 [ 35%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/tutorial/seed_and_extend/example1.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/tutorial/seed_and_extend/example1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example1.cpp make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' @@ -78662,38 +78733,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 35%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/tutorial/simple_rna_seq/base.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/tutorial/simple_rna_seq/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/base.cpp -[ 35%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example3 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example3 -lrt -lz -lbz2 -[ 36%] Linking CXX executable ../bin/demo_unassigned_or_unused_sequence_length -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/unassigned_or_unused/sequence_length.cpp.o -o ../bin/demo_unassigned_or_unused_sequence_length -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 36%] Built target demo_tutorial_seed_and_extend_example3 -make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/depend.internal". -Scanning dependencies of target demo_tutorial_sam_and_bam_io_solution1 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 36%] Built target demo_unassigned_or_unused_sequence_length -[ 36%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution1.cpp -make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/depend.internal". -Scanning dependencies of target demo_tutorial_sam_and_bam_io_example2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 36%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/tutorial/sam_and_bam_io/example2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/tutorial/sam_and_bam_io/example2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution2.cpp:1: @@ -78766,6 +78805,38 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 35%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example3 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example3 -lrt -lz -lbz2 +[ 36%] Linking CXX executable ../bin/demo_unassigned_or_unused_sequence_length +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/unassigned_or_unused/sequence_length.cpp.o -o ../bin/demo_unassigned_or_unused_sequence_length -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 36%] Built target demo_tutorial_seed_and_extend_example3 +make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/depend.internal". +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 36%] Built target demo_unassigned_or_unused_sequence_length +make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/DependInfo.cmake --color= +Scanning dependencies of target demo_tutorial_sam_and_bam_io_solution1 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/depend.internal". +[ 36%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution1.cpp +Scanning dependencies of target demo_tutorial_sam_and_bam_io_example2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 36%] Building CXX object demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/tutorial/sam_and_bam_io/example2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/tutorial/sam_and_bam_io/example2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -78867,31 +78938,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example2.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' @@ -78919,9 +78965,8 @@ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -78963,6 +79008,32 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/solution1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, @@ -79139,13 +79210,6 @@ [ 38%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution6 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/tutorial/seed_and_extend/solution6.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution6 -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 38%] Built target demo_tutorial_seed_and_extend_solution6 -make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/base.cpp:2: @@ -79171,12 +79235,13 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -Scanning dependencies of target demo_tutorial_q_gram_index_index_assignment6 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build +[ 38%] Built target demo_tutorial_seed_and_extend_solution6 +make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 38%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/tutorial/q_gram_index/index_assignment6.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/tutorial/q_gram_index/index_assignment6.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment6.cpp +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/base.cpp:2: @@ -79203,6 +79268,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +Scanning dependencies of target demo_tutorial_q_gram_index_index_assignment6 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 38%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/tutorial/q_gram_index/index_assignment6.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/tutorial/q_gram_index/index_assignment6.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment6.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, @@ -79224,26 +79295,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, - from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:48, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -[ 38%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_solution1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_solution1 -lrt -lz -lbz2 [ 38%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_base cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/tutorial/sam_and_bam_io/base.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 38%] Built target demo_tutorial_sam_and_bam_io_solution1 +[ 38%] Built target demo_tutorial_sam_and_bam_io_base make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/DependInfo.cmake --color= @@ -79255,8 +79311,23 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 38%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/tutorial/pattern_matching/find_exact.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/tutorial/pattern_matching/find_exact.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_exact.cpp +[ 38%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_solution1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/tutorial/sam_and_bam_io/solution1.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_solution1 -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, + from /build/seqan2-2.4.0+dfsg/include/seqan/realign.h:48, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 38%] Built target demo_tutorial_sam_and_bam_io_base +[ 38%] Built target demo_tutorial_sam_and_bam_io_solution1 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/DependInfo.cmake --color= @@ -79351,6 +79422,25 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long unsigned int]': +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:24:72: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 773 | Iter > > result = lhs; + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 775 | return result; + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' @@ -79420,6 +79510,33 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' @@ -79446,57 +79563,67 @@ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long unsigned int]': -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1618:57: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:24:72: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 773 | Iter > > result = lhs; - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 775 | return result; - | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 205 | return TProxy(it); + | ^~~~~~~~~~ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' + 88 | Proxy(TIterator const _it) + | ~~~~~~~~~~~~~~~~^~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:20: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:28:72: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:32: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 89 | : data_iterator(_it) - | ^ +/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:24:72: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:94:49: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 94 | : data_iterator(_other.data_iterator) + | ^ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:24:72: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 205 | return TProxy(it); + | ^~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' + 88 | Proxy(TIterator const _it) + | ~~~~~~~~~~~~~~~~^~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:20: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:28:72: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:32: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 89 | : data_iterator(_it) - | ^ +/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:24:72: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:94:49: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 94 | : data_iterator(_other.data_iterator) + | ^ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ @@ -79506,8 +79633,9 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -79527,6 +79655,44 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:28:72: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:32: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 89 | : data_iterator(_it) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:28:72: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:32: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 89 | : data_iterator(_it) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: @@ -79546,73 +79712,63 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:24:72: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 205 | return TProxy(it); - | ^~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' - 88 | Proxy(TIterator const _it) - | ~~~~~~~~~~~~~~~~^~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:20: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:24:72: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:94:49: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 94 | : data_iterator(_other.data_iterator) - | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:32: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 89 | : data_iterator(_it) + | ^ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:24:72: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 205 | return TProxy(it); - | ^~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:88:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' - 88 | Proxy(TIterator const _it) - | ~~~~~~~~~~~~~~~~^~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:20: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:24:72: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:94:49: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 94 | : data_iterator(_other.data_iterator) - | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:32: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 89 | : data_iterator(_it) + | ^ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, @@ -79697,12 +79853,14 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const seqan::StringSet > >&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TFileNames = const char*]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:16:39: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -79749,84 +79907,27 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:32: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:24:72: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:32: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 89 | : data_iterator(_it) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:205:12: required from 'typename seqan::Reference > > >::Type seqan::value(seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; typename seqan::Reference > > >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_base.h:250:17: required from 'typename seqan::Reference >::Type seqan::operator*(seqan::Iter&) [with TContainer = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TSpec = seqan::GapsIterator, seqan::Alloc<> > > >; typename seqan::Reference >::Type = seqan::Proxy >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1628:55: required from 'void seqan::_printRead(TStream&, seqan::AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TContigGaps = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedRead = seqan::AlignedReadStoreElement, void>; TLine = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:1777:23: required from 'void seqan::printAlignment(TStream&, seqan::AlignedReadLayout&, seqan::FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigId = int; TPos = int; TNum = int]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:24:72: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/proxy_iterator.h:89:32: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 89 | : data_iterator(_it) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(seqan::AnsonMyersRealignmentRound_::TProfileString&, seqan::AnsonMyersRealignmentRound_::TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; seqan::AnsonMyersRealignmentRound_::TProfileString = seqan::String >, seqan::Alloc<> >; seqan::AnsonMyersRealignmentRound_::TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' -/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(seqan::FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = seqan::FragmentStoreConfig]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:22:43: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:369:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:279:37: required from 'void seqan::AnsonMyersRealignmentRound_::_getReadAsProfile(seqan::AnsonMyersRealignmentRound_::TProfileString&, seqan::AnsonMyersRealignmentRound_::TAlignedReadElement&) [with TFragmentStore = seqan::FragmentStore<>; seqan::AnsonMyersRealignmentRound_::TProfileString = seqan::String >, seqan::Alloc<> >; seqan::AnsonMyersRealignmentRound_::TAlignedReadElement = seqan::AlignedReadStoreElement, void>]' +/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1020:13: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(seqan::FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = seqan::FragmentStoreConfig]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:22:43: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: @@ -79906,6 +80007,37 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const seqan::StringSet > >&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TFileNames = const char*]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:16:39: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' @@ -79938,8 +80070,9 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const seqan::StringSet > >&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig]' @@ -79962,6 +80095,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 38%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_find_exact +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/tutorial/pattern_matching/find_exact.cpp.o -o ../bin/demo_tutorial_pattern_matching_find_exact -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -79993,6 +80129,44 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const seqan::StringSet > >&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; seqan::CharString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TFileNames = const char*]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:16:39: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 38%] Built target demo_tutorial_pattern_matching_find_exact +make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: @@ -80045,37 +80219,38 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const seqan::StringSet > >&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TFileNames = const char*]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:16:39: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, +Scanning dependencies of target demo_tutorial_alignment_scoring_scheme_matrix +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const seqan::Tag&) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(seqan::Gaps >&, TPosition, TCount) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String, seqan::Alloc<> >; TPosition = long int; TCount = long int]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = seqan::AlignedReadStoreElement, void>*; TPos = long int; TSize = long int; TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = seqan::Gaps, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGapsPW = seqan::Gaps, seqan::AnchorGaps, seqan::Alloc<> >, seqan::InfixSegment> > >; TReadGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedReadIter = seqan::AlignedReadStoreElement, void>*; TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:18:33: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 773 | Iter > > result = lhs; + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] + 775 | return result; + | ^~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' + 112 | Iter const & operator = (Iter const & other_) + | ^~~~~~~~ +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 38%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/tutorial/alignment/scoring_scheme_matrix.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/tutorial/alignment/scoring_scheme_matrix.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_matrix.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: @@ -80107,7 +80282,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -80132,6 +80307,56 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Holder >::THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:169:26: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:18:33: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Holder >::THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:180:26: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String, seqan::Alloc<> >; seqan::Gaps >::TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:18:33: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -80248,63 +80473,6 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const seqan::StringSet > >&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TFileNames = const char*]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:16:39: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const seqan::Iter > >&, TDifference) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors = seqan::String, seqan::Alloc<> >; TDifference = long int]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:679:35: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, const seqan::Tag&) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; TTag = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:661:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TPos = long int; typename seqan::Iterator::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:466:20: required from 'void seqan::insertGaps(seqan::Gaps >&, TPosition, TCount) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String, seqan::Alloc<> >; TPosition = long int; TCount = long int]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2236:27: required from 'void seqan::_alignedReadsInsertGaps(TAlignedReadIter, TAlignedReadIter, TPos, TSize, TReadSeqStore&) [with TAlignedReadIter = seqan::AlignedReadStoreElement, void>*; TPos = long int; TSize = long int; TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2321:40: required from 'void seqan::_twoWayMergeAlignments(TContigGapsGlobal&, TContigGapsPW&, TReadGaps&, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TAlignedReadIter, TReadSeqStore&) [with TContigGapsGlobal = seqan::Gaps, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGapsPW = seqan::Gaps, seqan::AnchorGaps, seqan::Alloc<> >, seqan::InfixSegment> > >; TReadGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TAlignedReadIter = seqan::AlignedReadStoreElement, void>*; TReadSeqStore = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2437:31: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:18:33: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:773:58: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 773 | Iter > > result = lhs; - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:775:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] - 775 | return result; - | ^~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' - 112 | Iter const & operator = (Iter const & other_) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step2.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' @@ -80356,103 +80524,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 38%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_find_exact -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/link.txt --verbose=1 -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:996:18: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const seqan::StringSet > >&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1035:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; seqan::CharString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io.h:1043:23: required from 'bool seqan::loadContigs(seqan::FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig; TFileNames = const char*]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:16:39: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/tutorial/pattern_matching/find_exact.cpp.o -o ../bin/demo_tutorial_pattern_matching_find_exact -lrt -lz -lbz2 -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Holder >::THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:169:26: required from 'seqan::Gaps >::Gaps(const TGapAnchors&) [with TSource = seqan::Tag; TGapAnchors = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2393:29: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:18:33: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:887:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; seqan::Holder >::THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_anchor.h:180:26: required from 'seqan::Gaps >::Gaps(const TSourceNoConstNoRef&, TGapAnchors&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TGapAnchors = seqan::String, seqan::Alloc<> >; seqan::Gaps >::TSourceNoConstNoRef = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_all.h:2394:29: required from 'void seqan::convertPairWiseToGlobalAlignment(seqan::FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TContigGapsString = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:337:41: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::BamIOContext&, TForwardIter&, const TFormat&, const seqan::FragStoreImportFlags&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TStorageSpec = seqan::Dependent >; TForwardIter = seqan::Iter >, seqan::StreamIterator > >; TFormat = seqan::TagSelector, seqan::TagList > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:361:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&, const seqan::FragStoreImportFlags&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/store/store_io_sam.h:373:16: required from 'void seqan::readRecords(seqan::FragmentStore&, seqan::FormattedFile, TDirection, TSpec>&) [with TFSSpec = void; TConfig = seqan::FragmentStoreConfig; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:18:33: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/realignment/step1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 38%] Built target demo_tutorial_pattern_matching_find_exact -make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/depend.internal". -Scanning dependencies of target demo_tutorial_alignment_scoring_scheme_matrix -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 38%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/tutorial/alignment/scoring_scheme_matrix.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/tutorial/alignment/scoring_scheme_matrix.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_matrix.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, @@ -80518,38 +80589,47 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 38%] Building CXX object demos/CMakeFiles/demo_dox_index_length_countSequences.dir/dox/index/length_countSequences.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_length_countSequences.dir/dox/index/length_countSequences.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp +[ 38%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_file_io_solution1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/unassigned_or_unused/tutorial_file_io/solution1.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_file_io_solution1 -lrt -lz -lbz2 [ 38%] Linking CXX executable ../bin/demo_tutorial_sequences_in_depth_example_overflow cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/tutorial/sequences_in_depth/example_overflow.cpp.o -o ../bin/demo_tutorial_sequences_in_depth_example_overflow -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 38%] Built target demo_tutorial_sequences_in_depth_example_overflow +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 38%] Built target demo_unassigned_or_unused_tutorial_file_io_solution1 make -f demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/depend +[ 38%] Built target demo_tutorial_sequences_in_depth_example_overflow +make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/depend.internal". Scanning dependencies of target demo_tutorial_graph_graph_dijkstra make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 38%] Building CXX object demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/tutorial/graph/graph_dijkstra.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/tutorial/graph/graph_dijkstra.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_dijkstra.cpp -[ 38%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_file_io_solution1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/unassigned_or_unused/tutorial_file_io/solution1.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_file_io_solution1 -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 38%] Built target demo_unassigned_or_unused_tutorial_file_io_solution1 -make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/depend.internal". Scanning dependencies of target demo_tutorial_alignment_align_assignment1 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 38%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/tutorial/alignment/align_assignment1.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/tutorial/alignment/align_assignment1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align_assignment1.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ [ 38%] Linking CXX executable ../bin/demo_tutorial_alignment_scoring_scheme_matrix cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/tutorial/alignment/scoring_scheme_matrix.cpp.o -o ../bin/demo_tutorial_alignment_scoring_scheme_matrix -lrt -lz -lbz2 @@ -80560,15 +80640,6 @@ cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/depend.internal". -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/length_countSequences.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build @@ -81344,6 +81415,9 @@ [ 39%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment1.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 -lrt -lz -lbz2 +[ 39%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment3_solution +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/tutorial/pattern_matching/assignment3_solution.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment3_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 39%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 make -f demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/depend @@ -81357,9 +81431,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 39%] Building CXX object demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/tutorial/generic_programming/template_subclassing.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/tutorial/generic_programming/template_subclassing.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/generic_programming/template_subclassing.cpp -[ 39%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment3_solution -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/tutorial/pattern_matching/assignment3_solution.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment3_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 39%] Built target demo_tutorial_pattern_matching_assignment3_solution make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/depend @@ -81389,9 +81460,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 40%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp -[ 40%] Linking CXX executable ../bin/demo_tutorial_realignment_step1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_realignment_step1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_realignment_step1.dir/tutorial/realignment/step1.cpp.o -o ../bin/demo_tutorial_realignment_step1 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: @@ -81448,9 +81516,10 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -81461,7 +81530,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ @@ -81469,18 +81538,19 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:11:47: required from here + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:10:48: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -81488,7 +81558,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ @@ -81496,22 +81566,25 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -81520,24 +81593,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 40%] Built target demo_tutorial_realignment_step1 -make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' @@ -81561,14 +81621,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -81591,25 +81648,18 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -Scanning dependencies of target demo_tutorial_multiple_sequence_alignment_msa -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:10:48: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -81618,12 +81668,21 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 40%] Linking CXX executable ../bin/demo_tutorial_realignment_step1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_realignment_step1.dir/link.txt --verbose=1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:11:47: required from here @@ -81646,12 +81705,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 40%] Building CXX object demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/tutorial/multiple_sequence_alignment/msa.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/tutorial/multiple_sequence_alignment/msa.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/msa.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_realignment_step1.dir/tutorial/realignment/step1.cpp.o -o ../bin/demo_tutorial_realignment_step1 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -81676,21 +81734,18 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -81699,11 +81754,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' @@ -81727,38 +81790,40 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:10:48: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 40%] Built target demo_tutorial_realignment_step1 +make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' @@ -81783,15 +81848,21 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +Scanning dependencies of target demo_tutorial_multiple_sequence_alignment_msa +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 40%] Building CXX object demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/tutorial/multiple_sequence_alignment/msa.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/tutorial/multiple_sequence_alignment/msa.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/msa.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:10:48: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:11:47: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -81799,7 +81870,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ @@ -81807,7 +81878,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution4.cpp:1: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution1.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -81839,6 +81910,16 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 40%] Linking CXX executable ../bin/demo_tutorial_alignment_graph +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_graph.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_graph.dir/tutorial/alignment/graph.cpp.o -o ../bin/demo_tutorial_alignment_graph -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 40%] Built target demo_tutorial_alignment_graph +make -f demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/msa.cpp:4: /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h: In instantiation of 'bool seqan::convertAlignment(const seqan::Graph >&, seqan::Align&) [with TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = void; TSpec = const seqan::Tag; TSource = seqan::String, seqan::Alloc<> >; TSpec2 = seqan::Tag]': @@ -81852,16 +81933,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ -[ 40%] Linking CXX executable ../bin/demo_tutorial_alignment_graph -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_graph.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_graph.dir/tutorial/alignment/graph.cpp.o -o ../bin/demo_tutorial_alignment_graph -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 40%] Built target demo_tutorial_alignment_graph -make -f demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/depend.internal". Scanning dependencies of target demo_howto_filter_similar_sequences make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build @@ -81921,22 +81992,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 40%] Linking CXX executable ../bin/demo_tutorial_sequence_io_solution1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o -o ../bin/demo_tutorial_sequence_io_solution1 -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 40%] Built target demo_tutorial_sequence_io_solution1 -make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/depend.internal". -Scanning dependencies of target demo_tutorial_journaled_string_tree_journaled_string_tree_base -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 40%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:61, @@ -81996,9 +82051,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 40%] Linking CXX executable ../../bin/test_seeds_banded_chain_alignment_interface -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o -o ../../bin/test_seeds_banded_chain_alignment_interface -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': @@ -82067,6 +82119,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +[ 40%] Linking CXX executable ../bin/demo_tutorial_sequence_io_solution1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o -o ../bin/demo_tutorial_sequence_io_solution1 -lrt -lz -lbz2 +[ 40%] Linking CXX executable ../bin/demo_tutorial_sequence_io_solution4 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution4.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution4.dir/tutorial/sequence_io/solution4.cpp.o -o ../bin/demo_tutorial_sequence_io_solution4 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': @@ -82092,6 +82150,7 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': @@ -82117,6 +82176,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 40%] Built target demo_tutorial_sequence_io_solution1 +make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -82137,6 +82200,17 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/depend.internal". +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +Scanning dependencies of target demo_tutorial_journaled_string_tree_journaled_string_tree_base +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build +[ 40%] Built target demo_tutorial_sequence_io_solution4 +make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -82158,9 +82232,16 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -[ 40%] Linking CXX executable ../bin/demo_tutorial_sequence_io_solution4 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution4.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution4.dir/tutorial/sequence_io/solution4.cpp.o -o ../bin/demo_tutorial_sequence_io_solution4 -lrt -lz -lbz2 +[ 40%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/depend.internal". +Scanning dependencies of target demo_tutorial_a_first_example_basic_code +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 40%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/basic_code.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': @@ -82241,11 +82322,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 40%] Built target demo_tutorial_sequence_io_solution4 -make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': @@ -82293,14 +82369,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<11> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<11> >]' 143 | Index(Index const &other): | ^~~~~ -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/depend.internal". -Scanning dependencies of target demo_tutorial_a_first_example_basic_code -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 40%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/basic_code.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/howto/filter_similar_sequences.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': @@ -82327,8 +82395,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 40%] Linking CXX executable ../bin/demo_dox_index_length_countSequences +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_length_countSequences.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_length_countSequences.dir/dox/index/length_countSequences.cpp.o -o ../bin/demo_dox_index_length_countSequences -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 40%] Built target test_seeds_banded_chain_alignment_interface +[ 40%] Built target demo_dox_index_length_countSequences make -f demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/DependInfo.cmake --color= @@ -82343,8 +82414,11 @@ [ 41%] Linking CXX executable ../bin/demo_tutorial_realignment_step2 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_realignment_step2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_realignment_step2.dir/tutorial/realignment/step2.cpp.o -o ../bin/demo_tutorial_realignment_step2 -lrt -lz -lbz2 +[ 41%] Linking CXX executable ../bin/demo_tutorial_a_first_example_basic_code +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o -o ../bin/demo_tutorial_a_first_example_basic_code -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target demo_tutorial_realignment_step2 +[ 41%] Built target demo_tutorial_a_first_example_basic_code make -f demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/DependInfo.cmake --color= @@ -82356,21 +82430,24 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 41%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/tutorial/a_first_example/final_result.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_final_result.dir/tutorial/a_first_example/final_result.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/final_result.cpp -[ 41%] Linking CXX executable ../bin/demo_dox_index_length_countSequences -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_length_countSequences.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_length_countSequences.dir/dox/index/length_countSequences.cpp.o -o ../bin/demo_dox_index_length_countSequences -lrt -lz -lbz2 -[ 41%] Linking CXX executable ../bin/demo_tutorial_a_first_example_basic_code -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/tutorial/a_first_example/basic_code.cpp.o -o ../bin/demo_tutorial_a_first_example_basic_code -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target demo_dox_index_length_countSequences +[ 41%] Built target demo_tutorial_realignment_step2 make -f demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build.make demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/depend.internal". +Scanning dependencies of target demo_dox_bed_io_UNUSED_bed_stream_read make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target demo_tutorial_a_first_example_basic_code +make -f demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build.make demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 41%] Building CXX object demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp +[ 41%] Linking CXX executable ../../bin/test_seeds_banded_chain_alignment_interface +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/test_banded_chain_alignment_interface.cpp.o -o ../../bin/test_seeds_banded_chain_alignment_interface -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 41%] Built target test_seeds_banded_chain_alignment_interface make -f demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make demos/CMakeFiles/demo_howto_scores_load_score.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_scores_load_score.dir/DependInfo.cmake --color= @@ -82378,16 +82455,10 @@ Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_scores_load_score.dir/depend.internal". Scanning dependencies of target demo_howto_scores_load_score make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -Scanning dependencies of target demo_dox_bed_io_UNUSED_bed_stream_read make -f demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make demos/CMakeFiles/demo_howto_scores_load_score.dir/build -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build.make demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 41%] Building CXX object demos/CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/howto/scores/load_score.cpp -[ 41%] Building CXX object demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': @@ -82562,6 +82633,32 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bed_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:21:29: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:76, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:4: /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_sequence_buffer.h: In instantiation of 'void seqan::impl::create(seqan::JstBuffer_&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = seqan::Tag]': @@ -82582,6 +82679,28 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::StringSet, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::Owner > >]' 105 | Iter(Iter const & other_) : | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bed_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:21:29: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:78, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base.cpp:4: /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_util.h: In instantiation of 'decltype (seqan::bitScanForward(node.coverage)) seqan::impl::selectProxy(const TTraverserNode&, const SelectValidProxy&) [with TTraverserNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; decltype (seqan::bitScanForward(node.coverage)) = long unsigned int; seqan::SelectValidProxy = seqan::Tag]': @@ -82661,6 +82780,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: note: synthesized method 'seqan::DeltaMapEntry::DeltaMapEntry(seqan::DeltaMapEntry&&)' first required here 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 41%] Linking CXX executable ../bin/demo_tutorial_a_first_example_final_result +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_final_result.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_final_result.dir/tutorial/a_first_example/final_result.cpp.o -o ../bin/demo_tutorial_a_first_example_final_result -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 41%] Built target demo_tutorial_a_first_example_final_result +make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/depend.internal". +Scanning dependencies of target demo_tutorial_sequences_example_functionality1 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 41%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality1.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/howto/efficiently_import_sequences.cpp:3: @@ -82878,75 +83013,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bed_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:21:29: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bed_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:21:29: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/dox/bed_io/UNUSED_bed_stream_read.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -[ 41%] Linking CXX executable ../bin/demo_tutorial_a_first_example_final_result -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_final_result.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_final_result.dir/tutorial/a_first_example/final_result.cpp.o -o ../bin/demo_tutorial_a_first_example_final_result -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target demo_tutorial_a_first_example_final_result -make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/depend.internal". -Scanning dependencies of target demo_tutorial_sequences_example_functionality1 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 41%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality1.cpp -[ 41%] Linking CXX executable ../bin/demo_howto_scores_load_score -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_scores_load_score.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o -o ../bin/demo_howto_scores_load_score -lrt -lz -lbz2 +[ 41%] Linking CXX executable ../bin/demo_dox_bed_io_UNUSED_bed_stream_read +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o -o ../bin/demo_dox_bed_io_UNUSED_bed_stream_read -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target demo_howto_scores_load_score +[ 41%] Built target demo_dox_bed_io_UNUSED_bed_stream_read make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/DependInfo.cmake --color= @@ -83007,9 +83078,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 41%] Linking CXX executable ../bin/demo_dox_bed_io_UNUSED_bed_stream_read -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/dox/bed_io/UNUSED_bed_stream_read.cpp.o -o ../bin/demo_dox_bed_io_UNUSED_bed_stream_read -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality1.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': @@ -83027,8 +83095,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 41%] Linking CXX executable ../bin/demo_howto_scores_load_score +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_scores_load_score.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o -o ../bin/demo_howto_scores_load_score -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target demo_dox_bed_io_UNUSED_bed_stream_read +[ 41%] Built target demo_howto_scores_load_score make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/DependInfo.cmake --color= @@ -83040,11 +83111,14 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 41%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/tutorial/gff_and_gtf_io/solution3.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/tutorial/gff_and_gtf_io/solution3.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution3.cpp +[ 41%] Linking CXX executable ../bin/demo_howto_filter_similar_sequences +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_filter_similar_sequences.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_filter_similar_sequences.dir/howto/filter_similar_sequences.cpp.o -o ../bin/demo_howto_filter_similar_sequences -lrt -lz -lbz2 [ 41%] Linking CXX executable ../bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/tutorial/journaled_string_tree/journaled_string_tree_base.cpp.o -o ../bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base +[ 41%] Built target demo_howto_filter_similar_sequences make -f demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/DependInfo.cmake --color= @@ -83056,27 +83130,24 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 41%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/tutorial/modifiers/UNUSED_modcomplementdna.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/tutorial/modifiers/UNUSED_modcomplementdna.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/UNUSED_modcomplementdna.cpp -[ 43%] Linking CXX executable ../bin/demo_tutorial_sequences_example_functionality1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o -o ../bin/demo_tutorial_sequences_example_functionality1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 43%] Built target demo_tutorial_sequences_example_functionality1 +[ 41%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base make -f demos/CMakeFiles/demo_dox_sequence_string2.dir/build.make demos/CMakeFiles/demo_dox_sequence_string2.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string2.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string2.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string2.dir/depend.internal". -[ 43%] Linking CXX executable ../bin/demo_howto_filter_similar_sequences -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_filter_similar_sequences.dir/link.txt --verbose=1 Scanning dependencies of target demo_dox_sequence_string2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_string2.dir/build.make demos/CMakeFiles/demo_dox_sequence_string2.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_filter_similar_sequences.dir/howto/filter_similar_sequences.cpp.o -o ../bin/demo_howto_filter_similar_sequences -lrt -lz -lbz2 -[ 43%] Building CXX object demos/CMakeFiles/demo_dox_sequence_string2.dir/dox/sequence/string2.cpp.o +[ 41%] Building CXX object demos/CMakeFiles/demo_dox_sequence_string2.dir/dox/sequence/string2.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_sequence_string2.dir/dox/sequence/string2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/sequence/string2.cpp +[ 43%] Linking CXX executable ../bin/demo_tutorial_sequences_example_functionality1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/tutorial/sequences/example_functionality1.cpp.o -o ../bin/demo_tutorial_sequences_example_functionality1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 43%] Built target demo_howto_filter_similar_sequences +[ 43%] Built target demo_tutorial_sequences_example_functionality1 make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/DependInfo.cmake --color= @@ -83088,27 +83159,27 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 43%] Building CXX object demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/dox/sequence/UNUSED_prefix.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/dox/sequence/UNUSED_prefix.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/sequence/UNUSED_prefix.cpp -[ 43%] Linking CXX executable ../bin/demo_tutorial_modifiers_UNUSED_modcomplementdna -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/tutorial/modifiers/UNUSED_modcomplementdna.cpp.o -o ../bin/demo_tutorial_modifiers_UNUSED_modcomplementdna -lrt -lz -lbz2 +[ 43%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_3_workshop +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/tutorial/iterators/assignment_3_workshop.cpp.o -o ../bin/demo_tutorial_iterators_assignment_3_workshop -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 43%] Built target demo_tutorial_modifiers_UNUSED_modcomplementdna +[ 43%] Built target demo_tutorial_iterators_assignment_3_workshop make -f demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/depend.internal". +[ 43%] Linking CXX executable ../bin/demo_tutorial_modifiers_UNUSED_modcomplementdna +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/tutorial/modifiers/UNUSED_modcomplementdna.cpp.o -o ../bin/demo_tutorial_modifiers_UNUSED_modcomplementdna -lrt -lz -lbz2 Scanning dependencies of target demo_dox_statistics_build_markov_model make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 44%] Building CXX object demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/dox/statistics/build_markov_model.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_statistics_build_markov_model.dir/dox/statistics/build_markov_model.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp -[ 44%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_3_workshop -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/tutorial/iterators/assignment_3_workshop.cpp.o -o ../bin/demo_tutorial_iterators_assignment_3_workshop -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 44%] Built target demo_tutorial_iterators_assignment_3_workshop +[ 44%] Built target demo_tutorial_modifiers_UNUSED_modcomplementdna make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/DependInfo.cmake --color= @@ -83120,11 +83191,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 44%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/tutorial/parsing_command_line_arguments/assignment5_solution.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/tutorial/parsing_command_line_arguments/assignment5_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment5_solution.cpp -[ 44%] Linking CXX executable ../bin/demo_howto_efficiently_import_sequences -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_efficiently_import_sequences.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_efficiently_import_sequences.dir/howto/efficiently_import_sequences.cpp.o -o ../bin/demo_howto_efficiently_import_sequences -lrt -lz -lbz2 +[ 44%] Linking CXX executable ../bin/demo_dox_sequence_string2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_string2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_string2.dir/dox/sequence/string2.cpp.o -o ../bin/demo_dox_sequence_string2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 44%] Built target demo_howto_efficiently_import_sequences +[ 44%] Built target demo_dox_sequence_string2 make -f demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/DependInfo.cmake --color= @@ -83134,10 +83205,10 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 44%] Building CXX object demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_extension.cpp [ 45%] Linking CXX executable ../bin/demo_dox_sequence_UNUSED_prefix cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/link.txt --verbose=1 +[ 45%] Building CXX object demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_extension.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/dox/sequence/UNUSED_prefix.cpp.o -o ../bin/demo_dox_sequence_UNUSED_prefix -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target demo_dox_sequence_UNUSED_prefix @@ -83152,11 +83223,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/tutorial/journaled_set/solution_online_search_assignment3.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/tutorial/journaled_set/solution_online_search_assignment3.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp -[ 45%] Linking CXX executable ../bin/demo_dox_sequence_string2 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_string2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_string2.dir/dox/sequence/string2.cpp.o -o ../bin/demo_dox_sequence_string2 -lrt -lz -lbz2 +[ 45%] Linking CXX executable ../bin/demo_howto_efficiently_import_sequences +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_efficiently_import_sequences.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_efficiently_import_sequences.dir/howto/efficiently_import_sequences.cpp.o -o ../bin/demo_howto_efficiently_import_sequences -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 45%] Built target demo_dox_sequence_string2 +[ 45%] Built target demo_howto_efficiently_import_sequences make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/DependInfo.cmake --color= @@ -83203,60 +83274,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:41: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44, @@ -83304,34 +83321,6 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': @@ -83359,34 +83348,6 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:41: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': @@ -83414,25 +83375,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:3: @@ -83461,34 +83403,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:41: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -83518,34 +83432,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::JournaledStringIterSpec > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:41: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -83598,34 +83484,6 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:41: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': @@ -83677,6 +83535,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +[ 45%] Linking CXX executable ../bin/demo_dox_seeds_seeds_extension +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_seeds_seeds_extension.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o -o ../bin/demo_dox_seeds_seeds_extension -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment3.cpp:3: @@ -83705,9 +83566,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 45%] Linking CXX executable ../bin/demo_dox_seeds_seeds_extension -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_seeds_seeds_extension.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_seeds_seeds_extension.dir/dox/seeds/seeds_extension.cpp.o -o ../bin/demo_dox_seeds_seeds_extension -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target demo_dox_seeds_seeds_extension make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/depend @@ -83721,6 +83579,229 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/tutorial/a_first_example/solution_3.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/tutorial/a_first_example/solution_3.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_3.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:41: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:41: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:41: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:41: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:18:41: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/build_markov_model.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, + from /build/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_add_seed.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ [ 46%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/unassigned_or_unused/tutorials_custim_io/parse_blastn.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn -lrt -lz -lbz2 @@ -83737,16 +83818,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/tutorial/seed_and_extend/solution3.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/tutorial/seed_and_extend/solution3.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution3.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, - from /build/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_add_seed.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ [ 46%] Linking CXX executable ../bin/demo_tutorial_multiple_sequence_alignment_msa cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/tutorial/multiple_sequence_alignment/msa.cpp.o -o ../bin/demo_tutorial_multiple_sequence_alignment_msa -lrt -lz -lbz2 @@ -83755,26 +83826,26 @@ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/tutorial/a_first_example/solution_3.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 46%] Built target demo_tutorial_multiple_sequence_alignment_msa +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/depend.internal". -Scanning dependencies of target demo_tutorial_basics_show_alphabets -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/basics/show_alphabets.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 46%] Built target demo_tutorial_a_first_example_solution_3 make -f demos/CMakeFiles/demo_dox_sequence_stringset.dir/build.make demos/CMakeFiles/demo_dox_sequence_stringset.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_stringset.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_stringset.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_stringset.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_stringset.dir/depend.internal". +Scanning dependencies of target demo_tutorial_basics_show_alphabets +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_dox_sequence_stringset make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 46%] Building CXX object demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/basics/show_alphabets.cpp make -f demos/CMakeFiles/demo_dox_sequence_stringset.dir/build.make demos/CMakeFiles/demo_dox_sequence_stringset.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_dox_sequence_stringset.dir/dox/sequence/stringset.cpp.o @@ -83824,9 +83895,6 @@ [ 46%] Linking CXX executable ../bin/demo_dox_sequence_stringset cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_stringset.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_stringset.dir/dox/sequence/stringset.cpp.o -o ../bin/demo_dox_sequence_stringset -lrt -lz -lbz2 -[ 46%] Linking CXX executable ../bin/demo_dox_sequence_container_view_zip -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_container_view_zip.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_container_view_zip.dir/dox/sequence/container_view_zip.cpp.o -o ../bin/demo_dox_sequence_container_view_zip -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 46%] Built target demo_dox_sequence_stringset make -f demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_queue_example.dir/depend @@ -83840,6 +83908,9 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 46%] Building CXX object demos/CMakeFiles/demo_dox_parallel_queue_example.dir/dox/parallel/queue_example.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_parallel_queue_example.dir/dox/parallel/queue_example.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/parallel/queue_example.cpp +[ 46%] Linking CXX executable ../bin/demo_dox_sequence_container_view_zip +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_container_view_zip.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_container_view_zip.dir/dox/sequence/container_view_zip.cpp.o -o ../bin/demo_dox_sequence_container_view_zip -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 46%] Built target demo_dox_sequence_container_view_zip make -f demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/depend @@ -83983,29 +84054,29 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 47%] Linking CXX executable ../bin/demo_dox_statistics_build_markov_model -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_statistics_build_markov_model.dir/link.txt --verbose=1 [ 47%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_statistics_build_markov_model.dir/dox/statistics/build_markov_model.cpp.o -o ../bin/demo_dox_statistics_build_markov_model -lrt -lz -lbz2 +[ 48%] Linking CXX executable ../bin/demo_dox_modifier_modified_string +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_modified_string.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_modified_string.dir/dox/modifier/modified_string.cpp.o -o ../bin/demo_dox_modifier_modified_string -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 47%] Built target demo_dox_statistics_build_markov_model +[ 48%] Built target demo_dox_modifier_modified_string make -f demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build.make demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/depend.internal". -[ 48%] Linking CXX executable ../bin/demo_dox_modifier_modified_string -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_modified_string.dir/link.txt --verbose=1 Scanning dependencies of target demo_dox_graph_align_graph_align make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build.make demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_modified_string.dir/dox/modifier/modified_string.cpp.o -o ../bin/demo_dox_modifier_modified_string -lrt -lz -lbz2 [ 49%] Building CXX object demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/dox/graph_align/graph_align.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_align_graph_align.dir/dox/graph_align/graph_align.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/graph_align/graph_align.cpp +[ 49%] Linking CXX executable ../bin/demo_tutorial_a_first_example_base +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_base.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_base.dir/tutorial/a_first_example/base.cpp.o -o ../bin/demo_tutorial_a_first_example_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 49%] Built target demo_dox_modifier_modified_string +[ 49%] Built target demo_tutorial_a_first_example_base make -f demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/DependInfo.cmake --color= @@ -84017,22 +84088,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 49%] Building CXX object demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/dox/index/supermaxrepeats.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_supermaxrepeats.dir/dox/index/supermaxrepeats.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp -[ 49%] Linking CXX executable ../bin/demo_tutorial_a_first_example_base -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_base.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_base.dir/tutorial/a_first_example/base.cpp.o -o ../bin/demo_tutorial_a_first_example_base -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 49%] Built target demo_tutorial_a_first_example_base -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/depend.internal". -Scanning dependencies of target demo_tutorial_gff_and_gtf_io_example2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 49%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -84136,6 +84191,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' 203 | CyclicShape(CyclicShape const & other) : | ^~~~~~~~~~~ +[ 49%] Linking CXX executable ../bin/demo_dox_statistics_build_markov_model +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_statistics_build_markov_model.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_statistics_build_markov_model.dir/dox/statistics/build_markov_model.cpp.o -o ../bin/demo_dox_statistics_build_markov_model -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 49%] Built target demo_dox_statistics_build_markov_model +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/depend.internal". +Scanning dependencies of target demo_tutorial_gff_and_gtf_io_example2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 49%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example2.cpp [ 49%] Linking CXX executable ../bin/demo_dox_modifier_cyclic_shape_snippets cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/dox/modifier/cyclic_shape_snippets.cpp.o -o ../bin/demo_dox_modifier_cyclic_shape_snippets -lrt -lz -lbz2 @@ -84152,6 +84223,16 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 49%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/unassigned_or_unused/soft_to_hard_masking.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/unassigned_or_unused/soft_to_hard_masking.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:47, from /build/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example2.cpp:2: @@ -84224,6 +84305,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 49%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment5_solution +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/tutorial/parsing_command_line_arguments/assignment5_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment5_solution -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': @@ -84233,112 +84317,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -[ 49%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment5_solution -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/link.txt --verbose=1 -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:34:63: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/tutorial/parsing_command_line_arguments/assignment5_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment5_solution -lrt -lz -lbz2 -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >; TSpec = seqan::BottomUp<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >; TSpec = seqan::BottomUp<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1605:14: required from 'void seqan::goBegin(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::String >; TIndexSpec = void; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:453:20: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs.h:121:33: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:19:74: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' - 222 | VertexEsa(VertexEsa const &other): - | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:34:63: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:34:63: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 49%] Built target demo_tutorial_parsing_command_line_arguments_assignment5_solution -make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/depend.internal". -Scanning dependencies of target demo_dox_consensus_consensus_alignment -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 49%] Building CXX object demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/dox/consensus/consensus_alignment.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_consensus_consensus_alignment.dir/dox/consensus/consensus_alignment.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -84388,6 +84366,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 49%] Built target demo_tutorial_parsing_command_line_arguments_assignment5_solution +make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/depend.internal". +Scanning dependencies of target demo_dox_consensus_consensus_alignment +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 49%] Building CXX object demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/dox/consensus/consensus_alignment.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_consensus_consensus_alignment.dir/dox/consensus/consensus_alignment.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::Tag >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::BandedChainAlignment_, seqan::Tag >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TScoutState = seqan::DPScoutState_ > > >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::BandedChainAlignment_, seqan::Tag >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' @@ -84539,6 +84530,89 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:34:63: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >; TSpec = seqan::BottomUp<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >; TSpec = seqan::BottomUp<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1605:14: required from 'void seqan::goBegin(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::String >; TIndexSpec = void; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:453:20: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs.h:121:33: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:19:74: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' + 222 | VertexEsa(VertexEsa const &other): + | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:34:63: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +[ 49%] Linking CXX executable ../bin/demo_tutorial_journaled_set_solution_online_search_assignment3 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/link.txt --verbose=1 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:34:63: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/supermaxrepeats.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/tutorial/journaled_set/solution_online_search_assignment3.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_assignment3 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': @@ -84595,6 +84669,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 49%] Built target demo_tutorial_journaled_set_solution_online_search_assignment3 +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/depend.internal". +Scanning dependencies of target demo_tutorial_gff_and_gtf_io_example1 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 49%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example1.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::SuffixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>]': @@ -84616,9 +84703,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 129 | operator = (Segment const & source) | ^~~~~~~~ -[ 49%] Linking CXX executable ../bin/demo_tutorial_journaled_set_solution_online_search_assignment3 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/tutorial/journaled_set/solution_online_search_assignment3.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_assignment3 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example7.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': @@ -84641,19 +84725,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 49%] Built target demo_tutorial_journaled_set_solution_online_search_assignment3 -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/depend.internal". -Scanning dependencies of target demo_tutorial_gff_and_gtf_io_example1 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 49%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example1.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/soft_to_hard_masking.cpp:45: @@ -84849,22 +84920,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 49%] Linking CXX executable ../bin/demo_dox_index_supermaxrepeats -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_supermaxrepeats.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_supermaxrepeats.dir/dox/index/supermaxrepeats.cpp.o -o ../bin/demo_dox_index_supermaxrepeats -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 49%] Built target demo_dox_index_supermaxrepeats -make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/depend.internal". -Scanning dependencies of target demo_dox_modifier_cyclic_shape -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 49%] Building CXX object demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/dox/modifier/cyclic_shape.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_modifier_cyclic_shape.dir/dox/modifier/cyclic_shape.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:47, from /build/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/example1.cpp:2: @@ -84937,6 +84992,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 49%] Linking CXX executable ../bin/demo_dox_index_supermaxrepeats +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_supermaxrepeats.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_supermaxrepeats.dir/dox/index/supermaxrepeats.cpp.o -o ../bin/demo_dox_index_supermaxrepeats -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 49%] Built target demo_dox_index_supermaxrepeats +make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/depend.internal". +Scanning dependencies of target demo_dox_modifier_cyclic_shape +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 49%] Building CXX object demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/dox/modifier/cyclic_shape.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_modifier_cyclic_shape.dir/dox/modifier/cyclic_shape.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/modifier/cyclic_shape.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, @@ -84980,11 +85051,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/cyclic_shape.h:203:5: note: because 'seqan::CyclicShape > >' has user-provided 'seqan::CyclicShape > >::CyclicShape(const seqan::CyclicShape > >&)' 203 | CyclicShape(CyclicShape const & other) : | ^~~~~~~~~~~ -[ 49%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_example2 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_example2 -lrt -lz -lbz2 +[ 49%] Linking CXX executable ../bin/demo_dox_graph_align_graph_align +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_align_graph_align.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_align_graph_align.dir/dox/graph_align/graph_align.cpp.o -o ../bin/demo_dox_graph_align_graph_align -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 49%] Built target demo_tutorial_gff_and_gtf_io_example2 +[ 49%] Built target demo_dox_graph_align_graph_align make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/DependInfo.cmake --color= @@ -84996,11 +85067,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 49%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/tutorial/string_sets/example_functionality.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/tutorial/string_sets/example_functionality.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_functionality.cpp -[ 49%] Linking CXX executable ../bin/demo_dox_graph_align_graph_align -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_align_graph_align.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_align_graph_align.dir/dox/graph_align/graph_align.cpp.o -o ../bin/demo_dox_graph_align_graph_align -lrt -lz -lbz2 +[ 49%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_example2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/tutorial/gff_and_gtf_io/example2.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_example2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 49%] Built target demo_dox_graph_align_graph_align +[ 49%] Built target demo_tutorial_gff_and_gtf_io_example2 make -f demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build.make demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/DependInfo.cmake --color= @@ -85767,9 +85838,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 51%] Linking CXX executable ../bin/demo_dox_misc_enumerate_strings -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_enumerate_strings.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_enumerate_strings.dir/dox/misc/enumerate_strings.cpp.o -o ../bin/demo_dox_misc_enumerate_strings -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:40, @@ -85824,22 +85892,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 51%] Built target demo_dox_misc_enumerate_strings -make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/depend.internal". -Scanning dependencies of target demo_tutorial_graph_graph_algo_scc -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 51%] Linking CXX executable ../bin/demo_dox_stream_lexical_cast -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_stream_lexical_cast.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_stream_lexical_cast.dir/dox/stream/lexical_cast.cpp.o -o ../bin/demo_dox_stream_lexical_cast -lrt -lz -lbz2 -[ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_algo_scc.cpp +[ 50%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_example1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_example1 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -85869,19 +85924,29 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +[ 50%] Linking CXX executable ../bin/demo_dox_stream_lexical_cast +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_stream_lexical_cast.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_stream_lexical_cast.dir/dox/stream/lexical_cast.cpp.o -o ../bin/demo_dox_stream_lexical_cast -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 50%] Built target demo_tutorial_gff_and_gtf_io_example1 +make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/depend.internal". +Scanning dependencies of target demo_tutorial_graph_graph_algo_scc +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_algo_scc.cpp make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 51%] Built target demo_dox_stream_lexical_cast +[ 50%] Built target demo_dox_stream_lexical_cast make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/depend.internal". -Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment5 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/tutorial/simple_rna_seq/genequant_assignment5.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/tutorial/simple_rna_seq/genequant_assignment5.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -85947,6 +86012,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment5 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 50%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/tutorial/simple_rna_seq/genequant_assignment5.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/tutorial/simple_rna_seq/genequant_assignment5.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment5.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:47, from /build/seqan2-2.4.0+dfsg/demos/dox/consensus/consensus_alignment.cpp:3: @@ -85973,6 +86044,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +[ 51%] Linking CXX executable ../bin/demo_dox_misc_enumerate_strings +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_enumerate_strings.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_enumerate_strings.dir/dox/misc/enumerate_strings.cpp.o -o ../bin/demo_dox_misc_enumerate_strings -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:40, @@ -86177,6 +86251,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 51%] Built target demo_dox_misc_enumerate_strings +make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/depend.internal". +Scanning dependencies of target demo_tutorial_alignment_scoring_scheme_affine_dgs +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_affine_dgs.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -86253,9 +86340,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -[ 51%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_example1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/tutorial/gff_and_gtf_io/example1.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_example1 -lrt -lz -lbz2 /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSeqHValue = seqan::ConsensusScoreSequenceEntry >, seqan::Alloc<> > >; TSeqVValue = seqan::ConsensusScoreSequenceEntry, seqan::Alloc<> >, seqan::InfixSegment> >; TSeqVIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TScoringScheme = seqan::Score >, seqan::Score > > >; TDPCell = seqan::DPCell_ >; TColumnDescriptor = seqan::MetaColumnDescriptor, seqan::Tag >; TDPProfile = seqan::DPProfile_ >, seqan::Tag, seqan::TracebackOn, seqan::Tag > >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSeqHValue = seqan::ConsensusScoreSequenceEntry >, seqan::Alloc<> > >; TSeqVValue = seqan::ConsensusScoreSequenceEntry, seqan::Alloc<> >, seqan::InfixSegment> >; TSeqVIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TScoringScheme = seqan::Score >, seqan::Score > > >; TColumnDescriptor = seqan::MetaColumnDescriptor, seqan::Tag >; TDPProfile = seqan::DPProfile_ >, seqan::Tag, seqan::TracebackOn, seqan::Tag > >, seqan::Tag >]' @@ -86289,19 +86373,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 51%] Built target demo_tutorial_gff_and_gtf_io_example1 -make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/depend.internal". -Scanning dependencies of target demo_tutorial_alignment_scoring_scheme_affine_dgs -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/alignment/scoring_scheme_affine_dgs.cpp [ 51%] Linking CXX executable ../bin/demo_unassigned_or_unused_soft_to_hard_masking cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/unassigned_or_unused/soft_to_hard_masking.cpp.o -o ../bin/demo_unassigned_or_unused_soft_to_hard_masking -lrt -lz -lbz2 @@ -86472,6 +86543,9 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/dox/parallel/splitter_example.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_parallel_splitter_example.dir/dox/parallel/splitter_example.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/parallel/splitter_example.cpp +[ 51%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_preorder +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/tutorial/index_iterators/index_preorder.cpp.o -o ../bin/demo_tutorial_index_iterators_index_preorder -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, @@ -86518,6 +86592,13 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 51%] Built target demo_tutorial_index_iterators_index_preorder +make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -86545,25 +86626,15 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 51%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_preorder -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/tutorial/index_iterators/index_preorder.cpp.o -o ../bin/demo_tutorial_index_iterators_index_preorder -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 51%] Built target demo_tutorial_index_iterators_index_preorder -make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/DependInfo.cmake --color= -[ 51%] Linking CXX executable ../bin/demo_tutorial_graph_graph_algo_scc -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/link.txt --verbose=1 -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/depend.internal". -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o -o ../bin/demo_tutorial_graph_graph_algo_scc -lrt -lz -lbz2 Scanning dependencies of target demo_dox_sequence_UNUSED_infix make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/dox/sequence/UNUSED_infix.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/dox/sequence/UNUSED_infix.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/sequence/UNUSED_infix.cpp +[ 51%] Linking CXX executable ../bin/demo_tutorial_graph_graph_algo_scc +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o -o ../bin/demo_tutorial_graph_graph_algo_scc -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -86596,6 +86667,8 @@ make -f demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make demos/CMakeFiles/demo_tutorial_basics_allocator.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -86624,8 +86697,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/depend.internal". Scanning dependencies of target demo_tutorial_basics_allocator make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build @@ -86723,6 +86794,20 @@ | ^~~~~~~~ [ 51%] Linking CXX executable ../bin/demo_tutorial_basics_allocator cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_allocator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_basics_allocator.dir/tutorial/basics/allocator.cpp.o -o ../bin/demo_tutorial_basics_allocator -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 51%] Built target demo_tutorial_basics_allocator +make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/depend.internal". +Scanning dependencies of target demo_tutorial_indexed_fasta_io_solution2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, @@ -86773,25 +86858,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_basics_allocator.dir/tutorial/basics/allocator.cpp.o -o ../bin/demo_tutorial_basics_allocator -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 51%] Built target demo_tutorial_basics_allocator -make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/depend.internal". -Scanning dependencies of target demo_tutorial_indexed_fasta_io_solution2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution2.cpp -[ 51%] Linking CXX executable ../bin/demo_dox_sequence_UNUSED_infix -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/dox/sequence/UNUSED_infix.cpp.o -o ../bin/demo_dox_sequence_UNUSED_infix -lrt -lz -lbz2 +[ 51%] Linking CXX executable ../bin/demo_tutorial_alignment_scoring_scheme_affine_dgs +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o -o ../bin/demo_tutorial_alignment_scoring_scheme_affine_dgs -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 51%] Built target demo_dox_sequence_UNUSED_infix +[ 51%] Built target demo_tutorial_alignment_scoring_scheme_affine_dgs make -f demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build.make demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/DependInfo.cmake --color= @@ -86803,11 +86874,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/dox/seq_io/fai_index_example.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_seq_io_fai_index_example.dir/dox/seq_io/fai_index_example.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/seq_io/fai_index_example.cpp -[ 51%] Linking CXX executable ../bin/demo_tutorial_alignment_scoring_scheme_affine_dgs -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/tutorial/alignment/scoring_scheme_affine_dgs.cpp.o -o ../bin/demo_tutorial_alignment_scoring_scheme_affine_dgs -lrt -lz -lbz2 +[ 51%] Linking CXX executable ../bin/demo_dox_sequence_UNUSED_infix +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/dox/sequence/UNUSED_infix.cpp.o -o ../bin/demo_dox_sequence_UNUSED_infix -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 51%] Built target demo_tutorial_alignment_scoring_scheme_affine_dgs +[ 51%] Built target demo_dox_sequence_UNUSED_infix make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/DependInfo.cmake --color= @@ -86819,6 +86890,9 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 51%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp +[ 52%] Linking CXX executable ../../bin/yara_mapper +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara && /usr/bin/cmake -E cmake_link_script CMakeFiles/yara_mapper.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/yara_mapper.dir/mapper.cpp.o -o ../../bin/yara_mapper -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/dox/index/shape_hash_init.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': @@ -86828,11 +86902,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 51%] Linking CXX executable ../bin/demo_dox_index_shape_hash_init -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_shape_hash_init.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_shape_hash_init.dir/dox/index/shape_hash_init.cpp.o -o ../bin/demo_dox_index_shape_hash_init -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 51%] Built target demo_dox_index_shape_hash_init +[ 52%] Built target yara_mapper make -f demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/DependInfo.cmake --color= @@ -86842,8 +86913,24 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 51%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/unassigned_or_unused/seeds.cpp.o +[ 52%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/unassigned_or_unused/seeds.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_seeds.dir/unassigned_or_unused/seeds.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/seeds.cpp +[ 52%] Linking CXX executable ../bin/demo_dox_index_shape_hash_init +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_shape_hash_init.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_shape_hash_init.dir/dox/index/shape_hash_init.cpp.o -o ../bin/demo_dox_index_shape_hash_init -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 52%] Built target demo_dox_index_shape_hash_init +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/depend.internal". +Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 52%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution2.cpp:3: @@ -86988,9 +87075,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -[ 52%] Linking CXX executable ../../bin/yara_mapper -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara && /usr/bin/cmake -E cmake_link_script CMakeFiles/yara_mapper.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/yara_mapper.dir/mapper.cpp.o -o ../../bin/yara_mapper -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/seeds.cpp:3: @@ -87001,92 +87085,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Built target yara_mapper -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/depend.internal". -Scanning dependencies of target demo_tutorial_simple_rna_seq_genequant_assignment2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Building CXX object demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp -[ 52%] Linking CXX executable ../bin/demo_tutorial_indexed_fasta_io_solution2 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o -o ../bin/demo_tutorial_indexed_fasta_io_solution2 -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Built target demo_tutorial_indexed_fasta_io_solution2 -make -f demos/CMakeFiles/demo_dox_index_node_predicate.dir/build.make demos/CMakeFiles/demo_dox_index_node_predicate.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_node_predicate.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_node_predicate.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_node_predicate.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_node_predicate.dir/depend.internal". -Scanning dependencies of target demo_dox_index_node_predicate -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_node_predicate.dir/build.make demos/CMakeFiles/demo_dox_index_node_predicate.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Building CXX object demos/CMakeFiles/demo_dox_index_node_predicate.dir/dox/index/node_predicate.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_node_predicate.dir/dox/index/node_predicate.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp -[ 52%] Linking CXX executable ../bin/demo_dox_seq_io_fai_index_example -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_seq_io_fai_index_example.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_seq_io_fai_index_example.dir/dox/seq_io/fai_index_example.cpp.o -o ../bin/demo_dox_seq_io_fai_index_example -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Built target demo_dox_seq_io_fai_index_example -make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/depend.internal". -Scanning dependencies of target demo_tutorial_sequences_assignment_3_solution -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_3_solution.cpp -[ 52%] Linking CXX executable ../bin/demo_unassigned_or_unused_seeds -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_seeds.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_seeds.dir/unassigned_or_unused/seeds.cpp.o -o ../bin/demo_unassigned_or_unused_seeds -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Built target demo_unassigned_or_unused_seeds -make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_mums.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_mums.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_mums.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_mums.dir/depend.internal". -Scanning dependencies of target demo_dox_index_mums -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Building CXX object demos/CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp -[ 52%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 -make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/depend.internal". -Scanning dependencies of target demo_tutorial_bed_io_example1 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/tutorial/bed_io/example1.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_bed_io_example1.dir/tutorial/bed_io/example1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -87114,9 +87112,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 52%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example7 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example7 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -87172,26 +87167,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:90:68: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -[ 52%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_3_solution -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/link.txt --verbose=1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -87220,67 +87195,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_3_solution -lrt -lz -lbz2 -[ 52%] Built target demo_tutorial_seed_and_extend_example7 -make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/depend -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:90:68: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/depend.internal". -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:90:68: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -Scanning dependencies of target demo_tutorial_file_io_overview_solution1 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Building CXX object demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/tutorial/file_io_overview/solution1.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/tutorial/file_io_overview/solution1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution1.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:2: @@ -87300,66 +87214,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -[ 52%] Built target demo_tutorial_sequences_assignment_3_solution -make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/depend.internal". -Scanning dependencies of target demo_tutorial_a_first_example_basic_code_detailed -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/basic_code_detailed.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bed_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:7:84: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bed_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:7:84: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/genequant_assignment2.cpp:2: @@ -87436,6 +87290,155 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +[ 52%] Linking CXX executable ../bin/demo_tutorial_indexed_fasta_io_solution2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/tutorial/indexed_fasta_io/solution2.cpp.o -o ../bin/demo_tutorial_indexed_fasta_io_solution2 -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 52%] Built target demo_tutorial_indexed_fasta_io_solution2 +make -f demos/CMakeFiles/demo_dox_index_node_predicate.dir/build.make demos/CMakeFiles/demo_dox_index_node_predicate.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_node_predicate.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_node_predicate.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_node_predicate.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_node_predicate.dir/depend.internal". +Scanning dependencies of target demo_dox_index_node_predicate +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_node_predicate.dir/build.make demos/CMakeFiles/demo_dox_index_node_predicate.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 52%] Building CXX object demos/CMakeFiles/demo_dox_index_node_predicate.dir/dox/index/node_predicate.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_node_predicate.dir/dox/index/node_predicate.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp +[ 52%] Linking CXX executable ../bin/demo_unassigned_or_unused_seeds +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_seeds.dir/link.txt --verbose=1 +[ 52%] Linking CXX executable ../bin/demo_dox_seq_io_fai_index_example +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_seq_io_fai_index_example.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_seeds.dir/unassigned_or_unused/seeds.cpp.o -o ../bin/demo_unassigned_or_unused_seeds -lrt -lz -lbz2 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_seq_io_fai_index_example.dir/dox/seq_io/fai_index_example.cpp.o -o ../bin/demo_dox_seq_io_fai_index_example -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 52%] Built target demo_unassigned_or_unused_seeds +make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/depend.internal". +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +Scanning dependencies of target demo_tutorial_sequences_assignment_3_solution +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 52%] Built target demo_dox_seq_io_fai_index_example +make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_mums.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_mums.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_mums.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_mums.dir/depend.internal". +[ 52%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_3_solution.cpp +Scanning dependencies of target demo_dox_index_mums +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 52%] Building CXX object demos/CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp +[ 52%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment2.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 52%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 +make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/depend.internal". +Scanning dependencies of target demo_tutorial_bed_io_example1 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 52%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/tutorial/bed_io/example1.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_bed_io_example1.dir/tutorial/bed_io/example1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp +[ 52%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_example7 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o -o ../bin/demo_tutorial_seed_and_extend_example7 -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 52%] Built target demo_tutorial_seed_and_extend_example7 +make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/depend.internal". +Scanning dependencies of target demo_tutorial_file_io_overview_solution1 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 52%] Building CXX object demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/tutorial/file_io_overview/solution1.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/tutorial/file_io_overview/solution1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution1.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +[ 52%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_3_solution +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/tutorial/sequences/assignment_3_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_3_solution -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 52%] Built target demo_tutorial_sequences_assignment_3_solution +make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/depend.internal". +Scanning dependencies of target demo_tutorial_a_first_example_basic_code_detailed +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 52%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/basic_code_detailed.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:90:68: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:90:68: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': @@ -87445,6 +87448,74 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:90:68: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/node_predicate.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bed_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:7:84: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bed_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:7:84: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/example1.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -87541,22 +87612,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/tutorial/parsing_command_line_arguments/final_solution.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/tutorial/parsing_command_line_arguments/final_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/final_solution.cpp -[ 53%] Linking CXX executable ../bin/demo_tutorial_a_first_example_basic_code_detailed -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o -o ../bin/demo_tutorial_a_first_example_basic_code_detailed -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_tutorial_a_first_example_basic_code_detailed -make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/depend.internal". -Scanning dependencies of target demo_dox_graph_algorithms_all_pairs_shortest_path -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/all_pairs_shortest_path.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:3: @@ -87584,6 +87639,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +[ 53%] Linking CXX executable ../bin/demo_tutorial_a_first_example_basic_code_detailed +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/tutorial/a_first_example/basic_code_detailed.cpp.o -o ../bin/demo_tutorial_a_first_example_basic_code_detailed -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:3: @@ -87692,6 +87750,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Built target demo_tutorial_a_first_example_basic_code_detailed +make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:3: @@ -87719,6 +87782,14 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/depend.internal". +Scanning dependencies of target demo_dox_graph_algorithms_all_pairs_shortest_path +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/all_pairs_shortest_path.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/mums.cpp:3: @@ -88312,17 +88383,14 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/unassigned_or_unused/filter_sam.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/unassigned_or_unused/filter_sam.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp -[ 53%] Linking CXX executable ../bin/demo_dox_basic_enable_if -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_enable_if.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_enable_if.dir/dox/basic/enable_if.cpp.o -o ../bin/demo_dox_basic_enable_if -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 53%] Linking CXX executable ../bin/demo_dox_graph_algorithms_all_pairs_shortest_path cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/link.txt --verbose=1 -[ 53%] Built target demo_dox_basic_enable_if +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o -o ../bin/demo_dox_graph_algorithms_all_pairs_shortest_path -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Built target demo_dox_graph_algorithms_all_pairs_shortest_path make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/DependInfo.cmake --color= -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/dox/graph_algorithms/all_pairs_shortest_path.cpp.o -o ../bin/demo_dox_graph_algorithms_all_pairs_shortest_path -lrt -lz -lbz2 Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/depend.internal". Scanning dependencies of target demo_tutorial_seed_and_extend_solution1 @@ -88331,8 +88399,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution1.cpp +[ 53%] Linking CXX executable ../bin/demo_dox_basic_enable_if +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_enable_if.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_enable_if.dir/dox/basic/enable_if.cpp.o -o ../bin/demo_dox_basic_enable_if -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_dox_graph_algorithms_all_pairs_shortest_path +[ 53%] Built target demo_dox_basic_enable_if make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/DependInfo.cmake --color= @@ -88418,6 +88489,38 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +[ 53%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_assignment2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_assignment2 -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Built target demo_tutorial_simple_rna_seq_genequant_assignment2 +make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_store_store_example.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_store_store_example.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_store_store_example.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_store_store_example.dir/depend.internal". +Scanning dependencies of target demo_dox_store_store_example +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Building CXX object demos/CMakeFiles/demo_dox_store_store_example.dir/dox/store/store_example.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_store_store_example.dir/dox/store/store_example.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp +[ 53%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution1 -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Built target demo_tutorial_seed_and_extend_solution1 +make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/depend.internal". +Scanning dependencies of target demo_dox_graph_algorithms_dag_shortest_path +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/dox/graph_algorithms/dag_shortest_path.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/dox/graph_algorithms/dag_shortest_path.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/dag_shortest_path.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:18: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': @@ -88488,22 +88591,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -[ 53%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution1 -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_tutorial_seed_and_extend_solution1 -make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_store_store_example.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_store_store_example.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_store_store_example.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_store_store_example.dir/depend.internal". -Scanning dependencies of target demo_dox_store_store_example -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Building CXX object demos/CMakeFiles/demo_dox_store_store_example.dir/dox/store/store_example.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_store_store_example.dir/dox/store/store_example.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -88579,6 +88666,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 53%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised +make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/depend.internal". +Scanning dependencies of target demo_dox_misc_interval_tree_example +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Building CXX object demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:18: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': @@ -88778,9 +88881,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 53%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/tutorial/pairwise_sequence_alignment/alignment_global_specialised.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:17: @@ -88907,13 +89007,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised -make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:18: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': @@ -88942,12 +89035,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -Scanning dependencies of target demo_dox_graph_algorithms_dag_shortest_path -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/dox/graph_algorithms/dag_shortest_path.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/dox/graph_algorithms/dag_shortest_path.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/dag_shortest_path.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/filter_sam.cpp:19: @@ -89084,6 +89171,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +[ 53%] Linking CXX executable ../bin/demo_tutorial_file_io_overview_solution1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/link.txt --verbose=1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -89117,27 +89206,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -[ 53%] Linking CXX executable ../bin/demo_tutorial_file_io_overview_solution1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/tutorial/file_io_overview/solution1.cpp.o -o ../bin/demo_tutorial_file_io_overview_solution1 -lrt -lz -lbz2 -[ 53%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_genequant_assignment2 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/tutorial/simple_rna_seq/genequant_assignment2.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_genequant_assignment2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 53%] Built target demo_tutorial_file_io_overview_solution1 -make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/depend.internal". -Scanning dependencies of target demo_dox_misc_interval_tree_example -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Building CXX object demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_tutorial_simple_rna_seq_genequant_assignment2 make -f demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/DependInfo.cmake --color= @@ -89195,6 +89266,34 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = seqan::String >]': +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc<> >; TValue = int; TCargo = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1513:18: required from 'void seqan::findIntervals(seqan::String&, const seqan::IntervalTree&, TValue2, TValue2) [with TValue = int; TCargo = seqan::String >; TValue2 = int]' +/build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:22:42: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1562:18: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] + 1562 | act_prop = property(pm, act_knot); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' + 288 | IntervalTreeNode(IntervalTreeNode const & other) : + | ^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] + 1575 | next_prop = property(pm, targetVertex(it)); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' + 288 | IntervalTreeNode(IntervalTreeNode const & other) : + | ^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1598:27: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] + 1598 | next_prop = property(pm, targetVertex(it)); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' + 288 | IntervalTreeNode(IntervalTreeNode const & other) : + | ^~~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/dox/store/store_example.cpp:2: @@ -89593,34 +89692,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/tutorial/a_first_example/code_encapsulation.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/tutorial/a_first_example/code_encapsulation.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/code_encapsulation.cpp -In file included from /build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = seqan::String >]': -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1532:18: required from 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TValue, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc<> >; TValue = int; TCargo = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1513:18: required from 'void seqan::findIntervals(seqan::String&, const seqan::IntervalTree&, TValue2, TValue2) [with TValue = int; TCargo = seqan::String >; TValue2 = int]' -/build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:22:42: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1562:18: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] - 1562 | act_prop = property(pm, act_knot); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' - 288 | IntervalTreeNode(IntervalTreeNode const & other) : - | ^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1575:23: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] - 1575 | next_prop = property(pm, targetVertex(it)); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' - 288 | IntervalTreeNode(IntervalTreeNode const & other) : - | ^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1598:27: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] - 1598 | next_prop = property(pm, targetVertex(it)); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/demos/dox/misc/interval_tree_example.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' - 288 | IntervalTreeNode(IntervalTreeNode const & other) : - | ^~~~~~~~~~~~~~~~ [ 53%] Linking CXX executable ../bin/demo_dox_consensus_consensus_alignment cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_consensus_consensus_alignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_consensus_consensus_alignment.dir/dox/consensus/consensus_alignment.cpp.o -o ../bin/demo_dox_consensus_consensus_alignment -lrt -lz -lbz2 @@ -89782,6 +89853,22 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object demos/CMakeFiles/demo_dox_index_maxrepeats.dir/dox/index/maxrepeats.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_maxrepeats.dir/dox/index/maxrepeats.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/maxrepeats.cpp +[ 53%] Linking CXX executable ../bin/demo_dox_misc_interval_tree_example +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_interval_tree_example.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o -o ../bin/demo_dox_misc_interval_tree_example -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Built target demo_dox_misc_interval_tree_example +make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_online.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_online.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_online.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_online.dir/depend.internal". +Scanning dependencies of target demo_dox_find_finder_online +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Building CXX object demos/CMakeFiles/demo_dox_find_finder_online.dir/dox/find/finder_online.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_find_finder_online.dir/dox/find/finder_online.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/find/finder_online.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:61, @@ -89919,38 +90006,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 53%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_final_solution -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/tutorial/parsing_command_line_arguments/final_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_final_solution -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_tutorial_parsing_command_line_arguments_final_solution -make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_online.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_online.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_online.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_online.dir/depend.internal". -Scanning dependencies of target demo_dox_find_finder_online -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Building CXX object demos/CMakeFiles/demo_dox_find_finder_online.dir/dox/find/finder_online.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_find_finder_online.dir/dox/find/finder_online.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/find/finder_online.cpp -[ 53%] Linking CXX executable ../bin/demo_dox_misc_interval_tree_example -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_interval_tree_example.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_interval_tree_example.dir/dox/misc/interval_tree_example.cpp.o -o ../bin/demo_dox_misc_interval_tree_example -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_dox_misc_interval_tree_example -make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_finder.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_finder.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_finder.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_finder.dir/depend.internal". -Scanning dependencies of target demo_dox_index_finder -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Building CXX object demos/CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/finder.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/dox/index/maxrepeats.cpp:4: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': @@ -89960,9 +90015,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 53%] Linking CXX executable ../bin/demo_dox_index_mums -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_mums.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o -o ../bin/demo_dox_index_mums -lrt -lz -lbz2 +[ 53%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_final_solution +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/tutorial/parsing_command_line_arguments/final_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_final_solution -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -89981,6 +90036,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Built target demo_tutorial_parsing_command_line_arguments_final_solution +make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_finder.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_finder.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_finder.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_finder.dir/depend.internal". +Scanning dependencies of target demo_dox_index_finder +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Building CXX object demos/CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/finder.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/dox/index/maxrepeats.cpp:4: @@ -90007,13 +90075,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_dox_index_mums -make -f demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build.make demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/dox/index/maxrepeats.cpp:4: @@ -90034,21 +90095,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +[ 53%] Linking CXX executable ../bin/demo_dox_index_mums +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_mums.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_mums.dir/dox/index/mums.cpp.o -o ../bin/demo_dox_index_mums -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Built target demo_dox_index_mums +make -f demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build.make demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/depend.internal". Scanning dependencies of target demo_dox_index_begin_range_goDown_representative_repLength make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build.make demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/dox/index/begin_range_goDown_representative_repLength.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/dox/index/begin_range_goDown_representative_repLength.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/begin_range_goDown_representative_repLength.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/finder.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ [ 53%] Linking CXX executable ../bin/demo_dox_find_finder_online cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_find_finder_online.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_find_finder_online.dir/dox/find/finder_online.cpp.o -o ../bin/demo_dox_find_finder_online -lrt -lz -lbz2 @@ -90065,6 +90127,43 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/dox/basic/metaprogramming_math.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_basic_metaprogramming_math.dir/dox/basic/metaprogramming_math.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/basic/metaprogramming_math.cpp +[ 53%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_math +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_math.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_math.dir/dox/basic/metaprogramming_math.cpp.o -o ../bin/demo_dox_basic_metaprogramming_math -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Built target demo_dox_basic_metaprogramming_math +make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/depend.internal". +Scanning dependencies of target demo_dox_modifier_modified_string_nested +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Building CXX object demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string_nested.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/finder.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/begin_range_goDown_representative_repLength.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +[ 53%] Linking CXX executable ../bin/demo_dox_bam_io_bam_tags_dict +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/dox/bam_io/bam_tags_dict.cpp.o -o ../bin/demo_dox_bam_io_bam_tags_dict -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -90087,27 +90186,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::String >; TSpec = void]' 429 | Index(Index const &other): | ^~~~~ -[ 53%] Linking CXX executable ../bin/demo_dox_bam_io_bam_tags_dict -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/dox/bam_io/bam_tags_dict.cpp.o -o ../bin/demo_dox_bam_io_bam_tags_dict -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 53%] Built target demo_dox_bam_io_bam_tags_dict -make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/depend.internal". -Scanning dependencies of target demo_dox_modifier_modified_string_nested -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Building CXX object demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/modifier/modified_string_nested.cpp -[ 53%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_math -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_math.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_math.dir/dox/basic/metaprogramming_math.cpp.o -o ../bin/demo_dox_basic_metaprogramming_math -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_dox_basic_metaprogramming_math make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/DependInfo.cmake --color= @@ -90119,15 +90199,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 54%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/tutorial/a_first_example/solution_4_templateSubclassing.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/tutorial/a_first_example/solution_4_templateSubclassing.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_4_templateSubclassing.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/begin_range_goDown_representative_repLength.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/dox/index/begin_range_goDown_representative_repLength.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]': @@ -90230,6 +90301,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +[ 54%] Linking CXX executable ../bin/demo_dox_index_maxrepeats +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_maxrepeats.dir/link.txt --verbose=1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/dox/index/begin_range_goDown_representative_repLength.cpp:1: @@ -90250,14 +90323,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 54%] Linking CXX executable ../bin/demo_dox_index_finder -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_finder.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o -o ../bin/demo_dox_index_finder -lrt -lz -lbz2 -[ 54%] Linking CXX executable ../bin/demo_dox_index_maxrepeats -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_maxrepeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_maxrepeats.dir/dox/index/maxrepeats.cpp.o -o ../bin/demo_dox_index_maxrepeats -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 54%] Built target demo_dox_index_finder +[ 54%] Built target demo_dox_index_maxrepeats make -f demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/DependInfo.cmake --color= @@ -90267,10 +90335,13 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 54%] Building CXX object demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/dox/align_extend/extend_alignment.cpp.o -[ 54%] Built target demo_dox_index_maxrepeats cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_extend_extend_alignment.dir/dox/align_extend/extend_alignment.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp +[ 54%] Linking CXX executable ../bin/demo_dox_modifier_modified_string_nested +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_modified_string_nested.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o -o ../bin/demo_dox_modifier_modified_string_nested -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 54%] Built target demo_dox_modifier_modified_string_nested make -f demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/DependInfo.cmake --color= @@ -90282,27 +90353,27 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 54%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/dox/graph_algorithms/kruskals_algorithm.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/dox/graph_algorithms/kruskals_algorithm.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/kruskals_algorithm.cpp -[ 54%] Linking CXX executable ../bin/demo_dox_modifier_modified_string_nested -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_modifier_modified_string_nested.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_modifier_modified_string_nested.dir/dox/modifier/modified_string_nested.cpp.o -o ../bin/demo_dox_modifier_modified_string_nested -lrt -lz -lbz2 +[ 54%] Linking CXX executable ../bin/demo_unassigned_or_unused_gff2gtf +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/unassigned_or_unused/gff2gtf.cpp.o -o ../bin/demo_unassigned_or_unused_gff2gtf -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 54%] Built target demo_dox_modifier_modified_string_nested +[ 54%] Built target demo_unassigned_or_unused_gff2gtf make -f demos/CMakeFiles/demo_dox_align_integrate_align.dir/build.make demos/CMakeFiles/demo_dox_align_integrate_align.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_integrate_align.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_integrate_align.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_integrate_align.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_integrate_align.dir/depend.internal". +[ 54%] Linking CXX executable ../bin/demo_dox_index_finder +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_finder.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_finder.dir/dox/index/finder.cpp.o -o ../bin/demo_dox_index_finder -lrt -lz -lbz2 Scanning dependencies of target demo_dox_align_integrate_align make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_integrate_align.dir/build.make demos/CMakeFiles/demo_dox_align_integrate_align.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 54%] Building CXX object demos/CMakeFiles/demo_dox_align_integrate_align.dir/dox/align/integrate_align.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_integrate_align.dir/dox/align/integrate_align.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp -[ 54%] Linking CXX executable ../bin/demo_unassigned_or_unused_gff2gtf -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/unassigned_or_unused/gff2gtf.cpp.o -o ../bin/demo_unassigned_or_unused_gff2gtf -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 54%] Built target demo_unassigned_or_unused_gff2gtf +[ 54%] Built target demo_dox_index_finder make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/DependInfo.cmake --color= @@ -90314,14 +90385,17 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 54%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/tutorial/a_first_example/solution_4.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/tutorial/a_first_example/solution_4.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_4.cpp -[ 54%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_4_templateSubclassing -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/tutorial/a_first_example/solution_4_templateSubclassing.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_4_templateSubclassing -lrt -lz -lbz2 +[ 54%] Linking CXX executable ../bin/demo_dox_index_begin_range_goDown_representative_repLength +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/dox/index/begin_range_goDown_representative_repLength.cpp.o -o ../bin/demo_dox_index_begin_range_goDown_representative_repLength -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 54%] Built target demo_tutorial_a_first_example_solution_4_templateSubclassing +[ 54%] Built target demo_dox_index_begin_range_goDown_representative_repLength make -f demos/CMakeFiles/demo_dox_index_iterator_short.dir/build.make demos/CMakeFiles/demo_dox_index_iterator_short.dir/depend +[ 54%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_4_templateSubclassing +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/link.txt --verbose=1 make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator_short.dir/DependInfo.cmake --color= +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/tutorial/a_first_example/solution_4_templateSubclassing.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_4_templateSubclassing -lrt -lz -lbz2 Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator_short.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator_short.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator_short.dir/depend.internal". Scanning dependencies of target demo_dox_index_iterator_short @@ -90330,11 +90404,8 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 54%] Building CXX object demos/CMakeFiles/demo_dox_index_iterator_short.dir/dox/index/iterator_short.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_iterator_short.dir/dox/index/iterator_short.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp -[ 54%] Linking CXX executable ../bin/demo_dox_index_begin_range_goDown_representative_repLength -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/dox/index/begin_range_goDown_representative_repLength.cpp.o -o ../bin/demo_dox_index_begin_range_goDown_representative_repLength -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 54%] Built target demo_dox_index_begin_range_goDown_representative_repLength +[ 54%] Built target demo_tutorial_a_first_example_solution_4_templateSubclassing make -f demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build.make demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/DependInfo.cmake --color= @@ -90357,185 +90428,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 54%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_4 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/tutorial/a_first_example/solution_4.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_4 -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 54%] Built target demo_tutorial_a_first_example_solution_4 -make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/DependInfo.cmake --color= -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Reference > >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:269:34: required from 'void seqan::_reinitArrayGaps(seqan::Gaps >&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:408:21: required from 'void seqan::setSource(seqan::Gaps >&, TSequence&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:45:47: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/depend.internal". -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score, seqan::Blosum62_> >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score, seqan::Blosum62_> >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>]' -/build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:43: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score, seqan::Blosum62_> >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score, seqan::Blosum62_> >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>]' -/build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:43: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 647 | return Iter >(container(left), hostIterator(left) - right); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -Scanning dependencies of target demo_tutorial_genome_annotations_assignment_2_solution -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score, seqan::Blosum62_> >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score, seqan::Blosum62_> >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>]' -/build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:43: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score, seqan::Blosum62_> >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score, seqan::Blosum62_> >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>]' -/build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:43: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 486 | return TIterator(me, end(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -[ 54%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_2_solution.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score, seqan::Blosum62_> >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score, seqan::Blosum62_> >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>]' -/build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:43: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, @@ -90706,6 +90598,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +[ 54%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_4 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/tutorial/a_first_example/solution_4.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_4 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, @@ -90736,18 +90631,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -[ 54%] Linking CXX executable ../bin/demo_dox_graph_algorithms_kruskals_algorithm -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/dox/graph_algorithms/kruskals_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_kruskals_algorithm -lrt -lz -lbz2 -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 54%] Built target demo_tutorial_a_first_example_solution_4 +make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/depend.internal". +Scanning dependencies of target demo_tutorial_genome_annotations_assignment_2_solution +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 54%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_2_solution.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, @@ -90779,13 +90675,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 54%] Built target demo_dox_graph_algorithms_kruskals_algorithm -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/depend.internal". /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const seqan::Iter >&, int) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:631:62: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWiseBanded&) [with TDPScout = seqan::DPScout_ >, seqan::Terminator_ > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix >, seqan::Tag >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoringScheme = seqan::Score >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::AlignExtend_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; seqan::NavigateColumnWiseBanded = seqan::Tag]' /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ > >; TSequenceH = seqan::Segment >, seqan::InfixSegment>; TSequenceV = seqan::Segment >, seqan::InfixSegment>; TScoreScheme = seqan::Score >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::AlignExtend_ >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn<>; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' @@ -90840,12 +90729,144 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -Scanning dependencies of target demo_tutorial_iterators_assignment_4_workshop_solution -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 54%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_4_workshop_solution.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:548:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = seqan::Holder, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Value::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:650:42: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Reference > >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:269:34: required from 'void seqan::_reinitArrayGaps(seqan::Gaps >&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_array.h:408:21: required from 'void seqan::setSource(seqan::Gaps >&, TSequence&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:45:47: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:24: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score, seqan::Blosum62_> >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score, seqan::Blosum62_> >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>]' +/build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:43: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score, seqan::Blosum62_> >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score, seqan::Blosum62_> >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>]' +/build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:43: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 647 | return Iter >(container(left), hostIterator(left) - right); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:509:41: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score, seqan::Blosum62_> >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score, seqan::Blosum62_> >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>]' +/build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:43: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:520:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:510:37: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score, seqan::Blosum62_> >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score, seqan::Blosum62_> >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>]' +/build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:43: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:486:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 486 | return TIterator(me, end(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:61, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, from /build/seqan2-2.4.0+dfsg/demos/dox/align_extend/extend_alignment.cpp:3: @@ -90876,6 +90897,31 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_string.h:117:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 117 | ModifiedString(typename Parameter_::Type host) : | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: required from 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:526:58: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score, seqan::Blosum62_> >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_<>; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score, seqan::Blosum62_> >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_<>; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&, const TGapModel&) [with TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_<>; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; TGapModel = seqan::Tag; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:190:33: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&, const TAlgoTag&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag; TAlgoTag = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:218:31: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&, const seqan::AlignConfig&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_unbanded.h:230:27: required from 'TScoreValue seqan::globalAlignment(seqan::Align&, const seqan::Score&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TAlignSpec = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::ScoreMatrix, seqan::Blosum62_>]' +/build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:48:43: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/demos/dox/align/integrate_align.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, @@ -90942,6 +90988,31 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +[ 54%] Linking CXX executable ../bin/demo_dox_graph_algorithms_kruskals_algorithm +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/dox/graph_algorithms/kruskals_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_kruskals_algorithm -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 54%] Built target demo_dox_graph_algorithms_kruskals_algorithm +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/depend.internal". +Scanning dependencies of target demo_tutorial_iterators_assignment_4_workshop_solution +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 54%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_4_workshop_solution.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::String >; TIndexSpec = void; TSpec = seqan::ParentLinks; TDfsOrder = seqan::Postorder_]': @@ -91046,6 +91117,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +[ 54%] Linking CXX executable ../bin/demo_dox_basic_zip_iterator +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_zip_iterator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_zip_iterator.dir/dox/basic/zip_iterator.cpp.o -o ../bin/demo_dox_basic_zip_iterator -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/dox/index/iterator_short.cpp:2: @@ -91066,9 +91140,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 54%] Linking CXX executable ../bin/demo_dox_basic_zip_iterator -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_zip_iterator.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_zip_iterator.dir/dox/basic/zip_iterator.cpp.o -o ../bin/demo_dox_basic_zip_iterator -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 54%] Built target demo_dox_basic_zip_iterator make -f demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/depend @@ -91204,12 +91275,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 55%] Linking CXX executable ../bin/demo_dox_align_integrate_align -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_integrate_align.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_integrate_align.dir/dox/align/integrate_align.cpp.o -o ../bin/demo_dox_align_integrate_align -lrt -lz -lbz2 -[ 55%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_4_workshop_solution -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o -o ../bin/demo_tutorial_iterators_assignment_4_workshop_solution -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_2_solution.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': @@ -91227,30 +91292,36 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 55%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_4_workshop_solution +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/assignment_4_workshop_solution.cpp.o -o ../bin/demo_tutorial_iterators_assignment_4_workshop_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 55%] Built target demo_dox_align_integrate_align +[ 55%] Built target demo_tutorial_iterators_assignment_4_workshop_solution make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/depend.internal". -[ 55%] Built target demo_tutorial_iterators_assignment_4_workshop_solution +Scanning dependencies of target demo_tutorial_a_first_example_solution_6 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_6.cpp +[ 55%] Linking CXX executable ../bin/demo_dox_align_integrate_align +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_integrate_align.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_integrate_align.dir/dox/align/integrate_align.cpp.o -o ../bin/demo_dox_align_integrate_align -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 55%] Built target demo_dox_align_integrate_align make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/depend.internal". -Scanning dependencies of target demo_tutorial_a_first_example_solution_6 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_journaled_set_example_journal_string_basic make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_6.cpp [ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/tutorial/journaled_set/example_journal_string_basic.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/tutorial/journaled_set/example_journal_string_basic.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_journal_string_basic.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, @@ -91328,6 +91399,19 @@ [ 55%] Linking CXX executable ../bin/demo_dox_graph_types_graph_algo_dijkstra cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/dox/graph_types/graph_algo_dijkstra.cpp.o -o ../bin/demo_dox_graph_types_graph_algo_dijkstra -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 55%] Built target demo_dox_graph_types_graph_algo_dijkstra +make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/depend.internal". +Scanning dependencies of target demo_dox_basic_metaprogramming_logic +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 55%] Building CXX object demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/basic/metaprogramming_logic.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:61, @@ -91375,17 +91459,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 55%] Built target demo_dox_graph_types_graph_algo_dijkstra -make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/depend.internal". -Scanning dependencies of target demo_dox_basic_metaprogramming_logic -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -91409,16 +91482,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 55%] Building CXX object demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/basic/metaprogramming_logic.cpp -[ 55%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment2 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/tutorial/pattern_matching/assignment2.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment2 -lrt -lz -lbz2 -[ 55%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_6 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_6 -lrt -lz -lbz2 +[ 55%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_logic +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o -o ../bin/demo_dox_basic_metaprogramming_logic -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 55%] Built target demo_tutorial_pattern_matching_assignment2 +[ 55%] Built target demo_dox_basic_metaprogramming_logic make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/DependInfo.cmake --color= @@ -91428,29 +91496,32 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/tutorial/a_first_example/solution_1.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/tutorial/a_first_example/solution_1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_1.cpp +[ 55%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_6 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/tutorial/a_first_example/solution_6.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_6 -lrt -lz -lbz2 +[ 55%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/tutorial/pattern_matching/assignment2.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment2 -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 55%] Built target demo_tutorial_a_first_example_solution_6 make -f demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/depend.internal". +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_genome_annotations_base make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/base.cpp -[ 55%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_logic -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/dox/basic/metaprogramming_logic.cpp.o -o ../bin/demo_dox_basic_metaprogramming_logic -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 55%] Built target demo_dox_basic_metaprogramming_logic +[ 55%] Built target demo_tutorial_pattern_matching_assignment2 make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/DependInfo.cmake --color= +[ 55%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/base.cpp Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/depend.internal". Scanning dependencies of target demo_dox_basic_metaprogramming_control @@ -91459,11 +91530,14 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 55%] Building CXX object demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/dox/basic/metaprogramming_control.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_basic_metaprogramming_control.dir/dox/basic/metaprogramming_control.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/basic/metaprogramming_control.cpp +[ 55%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_control +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_control.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_control.dir/dox/basic/metaprogramming_control.cpp.o -o ../bin/demo_dox_basic_metaprogramming_control -lrt -lz -lbz2 [ 56%] Linking CXX executable ../bin/demo_tutorial_journaled_set_example_journal_string_basic cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/tutorial/journaled_set/example_journal_string_basic.cpp.o -o ../bin/demo_tutorial_journaled_set_example_journal_string_basic -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 56%] Built target demo_tutorial_journaled_set_example_journal_string_basic +[ 56%] Built target demo_dox_basic_metaprogramming_control make -f demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/DependInfo.cmake --color= @@ -91475,11 +91549,8 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 56%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/dox/graph_algorithms/transitive_closure.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/dox/graph_algorithms/transitive_closure.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/transitive_closure.cpp -[ 56%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_control -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_control.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_control.dir/dox/basic/metaprogramming_control.cpp.o -o ../bin/demo_dox_basic_metaprogramming_control -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 56%] Built target demo_dox_basic_metaprogramming_control +[ 56%] Built target demo_tutorial_journaled_set_example_journal_string_basic make -f demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/DependInfo.cmake --color= @@ -91537,6 +91608,38 @@ /build/seqan2-2.4.0+dfsg/include/seqan/store/store_annotation.h:272:5: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' 272 | operator = (Iter const &_origin) | ^~~~~~~~ +[ 56%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_solution1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/tutorial/gff_and_gtf_io/solution1.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_solution1 -lrt -lz -lbz2 +[ 56%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_2_solution +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_2_solution -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 56%] Built target demo_tutorial_gff_and_gtf_io_solution1 +make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/depend.internal". +Scanning dependencies of target demo_dox_score_score +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/build +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 56%] Building CXX object demos/CMakeFiles/demo_dox_score_score.dir/dox/score/score.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_score_score.dir/dox/score/score.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/score/score.cpp +[ 56%] Built target demo_tutorial_genome_annotations_assignment_2_solution +make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/depend.internal". +Scanning dependencies of target demo_tutorial_sequences_assignment_4_solution +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/tutorial/sequences/assignment_4_solution.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/tutorial/sequences/assignment_4_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_4_solution.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -91591,12 +91694,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 56%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_solution1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/tutorial/gff_and_gtf_io/solution1.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_solution1 -lrt -lz -lbz2 -[ 56%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_2_solution -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/tutorial/genome_annotations/assignment_2_solution.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_2_solution -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -91653,11 +91750,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 56%] Built target demo_tutorial_gff_and_gtf_io_solution1 -make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/base.cpp:2: @@ -91677,30 +91769,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 56%] Linking CXX executable ../bin/demo_dox_align_extend_extend_alignment +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_extend_extend_alignment.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_extend_extend_alignment.dir/dox/align_extend/extend_alignment.cpp.o -o ../bin/demo_dox_align_extend_extend_alignment -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/depend.internal". -[ 56%] Built target demo_tutorial_genome_annotations_assignment_2_solution -make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/depend +[ 56%] Built target demo_dox_align_extend_extend_alignment +make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/depend.internal". -Scanning dependencies of target demo_tutorial_sequences_assignment_4_solution -Scanning dependencies of target demo_dox_score_score -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/depend.internal". +Scanning dependencies of target demo_howto_align_gaps_clipping make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 56%] Building CXX object demos/CMakeFiles/demo_dox_score_score.dir/dox/score/score.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_score_score.dir/dox/score/score.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/score/score.cpp -[ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/tutorial/sequences/assignment_4_solution.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/tutorial/sequences/assignment_4_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/assignment_4_solution.cpp -[ 56%] Linking CXX executable ../bin/demo_dox_align_extend_extend_alignment -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_extend_extend_alignment.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_extend_extend_alignment.dir/dox/align_extend/extend_alignment.cpp.o -o ../bin/demo_dox_align_extend_extend_alignment -lrt -lz -lbz2 +[ 56%] Building CXX object demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/howto/align_gaps_clipping.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_howto_align_gaps_clipping.dir/howto/align_gaps_clipping.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/howto/align_gaps_clipping.cpp /build/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align.cpp: In function 'int main()': /build/seqan2-2.4.0+dfsg/demos/tutorial/alignment/align.cpp:138:20: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 138 | it = begin(row1); @@ -91718,19 +91802,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 56%] Built target demo_dox_align_extend_extend_alignment -make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/depend.internal". -Scanning dependencies of target demo_howto_align_gaps_clipping -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 56%] Building CXX object demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/howto/align_gaps_clipping.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_howto_align_gaps_clipping.dir/howto/align_gaps_clipping.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/howto/align_gaps_clipping.cpp [ 56%] Linking CXX executable ../bin/demo_dox_graph_algorithms_transitive_closure cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/dox/graph_algorithms/transitive_closure.cpp.o -o ../bin/demo_dox_graph_algorithms_transitive_closure -lrt -lz -lbz2 @@ -91777,10 +91848,10 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/tutorial/q_gram_index/index_qgram_hash.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/tutorial/q_gram_index/index_qgram_hash.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_qgram_hash.cpp [ 56%] Linking CXX executable ../bin/demo_tutorial_sequences_assignment_4_solution +[ 56%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/tutorial/q_gram_index/index_qgram_hash.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/link.txt --verbose=1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/tutorial/q_gram_index/index_qgram_hash.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_qgram_hash.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/tutorial/sequences/assignment_4_solution.cpp.o -o ../bin/demo_tutorial_sequences_assignment_4_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 56%] Built target demo_tutorial_sequences_assignment_4_solution @@ -91870,30 +91941,30 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 59%] Building CXX object demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/dox/misc/name_store_cache.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_misc_name_store_cache.dir/dox/misc/name_store_cache.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/misc/name_store_cache.cpp -[ 59%] Linking CXX executable ../bin/demo_dox_find_finder_aho_corasick -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_find_finder_aho_corasick.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_find_finder_aho_corasick.dir/dox/find/finder_aho_corasick.cpp.o -o ../bin/demo_dox_find_finder_aho_corasick -lrt -lz -lbz2 [ 59%] Linking CXX executable ../bin/demo_tutorial_q_gram_index_index_qgram_hash cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/tutorial/q_gram_index/index_qgram_hash.cpp.o -o ../bin/demo_tutorial_q_gram_index_index_qgram_hash -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 59%] Built target demo_dox_find_finder_aho_corasick +[ 59%] Built target demo_tutorial_q_gram_index_index_qgram_hash make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/depend.internal". -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_unassigned_or_unused_index_find_stringset make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 59%] Built target demo_tutorial_q_gram_index_index_qgram_hash +[ 60%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp +[ 60%] Linking CXX executable ../bin/demo_dox_find_finder_aho_corasick +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_find_finder_aho_corasick.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_find_finder_aho_corasick.dir/dox/find/finder_aho_corasick.cpp.o -o ../bin/demo_dox_find_finder_aho_corasick -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 60%] Built target demo_dox_find_finder_aho_corasick make -f demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/DependInfo.cmake --color= -[ 60%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/depend.internal". Scanning dependencies of target demo_dox_align_global_alignment_unbanded @@ -91985,6 +92056,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 60%] Linking CXX executable ../bin/demo_dox_graph_algorithms_depth_first_search +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/dox/graph_algorithms/depth_first_search.cpp.o -o ../bin/demo_dox_graph_algorithms_depth_first_search -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:3: @@ -92004,6 +92078,7 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -92033,9 +92108,18 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 60%] Linking CXX executable ../bin/demo_dox_graph_algorithms_depth_first_search -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/dox/graph_algorithms/depth_first_search.cpp.o -o ../bin/demo_dox_graph_algorithms_depth_first_search -lrt -lz -lbz2 +[ 60%] Built target demo_dox_graph_algorithms_depth_first_search +make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/depend.internal". +Scanning dependencies of target demo_blast_blast_in_lowlevel +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 60%] Building CXX object demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/blast/blast_in_lowlevel.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_blast_blast_in_lowlevel.dir/blast/blast_in_lowlevel.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/blast/blast_in_lowlevel.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -92101,13 +92185,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 60%] Built target demo_dox_graph_algorithms_depth_first_search -make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -92137,12 +92214,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -Scanning dependencies of target demo_blast_blast_in_lowlevel -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 60%] Building CXX object demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/blast/blast_in_lowlevel.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_blast_blast_in_lowlevel.dir/blast/blast_in_lowlevel.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/blast/blast_in_lowlevel.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -92172,41 +92243,38 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 60%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_base -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_base.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o -o ../bin/demo_tutorial_genome_annotations_base -lrt -lz -lbz2 [ 60%] Linking CXX executable ../bin/demo_dox_misc_name_store_cache cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_name_store_cache.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_name_store_cache.dir/dox/misc/name_store_cache.cpp.o -o ../bin/demo_dox_misc_name_store_cache -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 60%] Built target demo_dox_misc_name_store_cache make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/depend -[ 60%] Built target demo_tutorial_genome_annotations_base make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/depend.internal". +Scanning dependencies of target demo_tutorial_vcf_io_solution1 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 60%] Building CXX object demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution1.cpp +[ 60%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_base +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_base.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_base.dir/tutorial/genome_annotations/base.cpp.o -o ../bin/demo_tutorial_genome_annotations_base -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 60%] Built target demo_tutorial_genome_annotations_base make -f demos/CMakeFiles/demo_dox_sequence_string.dir/build.make demos/CMakeFiles/demo_dox_sequence_string.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/depend.internal". Scanning dependencies of target demo_dox_sequence_string make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_string.dir/build.make demos/CMakeFiles/demo_dox_sequence_string.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -Scanning dependencies of target demo_tutorial_vcf_io_solution1 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build [ 60%] Building CXX object demos/CMakeFiles/demo_dox_sequence_string.dir/dox/sequence/string.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_sequence_string.dir/dox/sequence/string.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/sequence/string.cpp -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 60%] Building CXX object demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution1.cpp -[ 60%] Linking CXX executable ../bin/demo_unassigned_or_unused_filter_sam -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/unassigned_or_unused/filter_sam.cpp.o -o ../bin/demo_unassigned_or_unused_filter_sam -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': @@ -92216,19 +92284,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 60%] Built target demo_unassigned_or_unused_filter_sam -make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/depend.internal". -Scanning dependencies of target demo_unassigned_or_unused_rooted_iterator -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 60%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/rooted_iterator.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -92251,6 +92306,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index > > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' 429 | Index(Index const &other): | ^~~~~ +[ 60%] Linking CXX executable ../bin/demo_unassigned_or_unused_filter_sam +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/unassigned_or_unused/filter_sam.cpp.o -o ../bin/demo_unassigned_or_unused_filter_sam -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:48, from /build/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/solution1.cpp:1: @@ -92275,36 +92333,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::External > >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::External > >, seqan::Owner<> >; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::External > >, seqan::Owner<> >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; seqan::Iter > >::TSize = long unsigned int]' -/build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' -/build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' -/build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:69: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ [ 60%] Linking CXX executable ../bin/demo_dox_graph_algorithms_dijkstra cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/dox/graph_algorithms/dijkstra.cpp.o -o ../bin/demo_dox_graph_algorithms_dijkstra -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:45, @@ -92325,19 +92357,58 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 60%] Built target demo_dox_graph_algorithms_dijkstra +make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/depend.internal". +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 60%] Built target demo_unassigned_or_unused_filter_sam make -f demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build.make demos/CMakeFiles/demo_howto_using_zip_iterator.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_using_zip_iterator.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_using_zip_iterator.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_using_zip_iterator.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_using_zip_iterator.dir/depend.internal". +Scanning dependencies of target demo_unassigned_or_unused_rooted_iterator +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 60%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/rooted_iterator.cpp Scanning dependencies of target demo_howto_using_zip_iterator make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build.make demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 60%] Building CXX object demos/CMakeFiles/demo_howto_using_zip_iterator.dir/howto/using_zip_iterator.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_howto_using_zip_iterator.dir/howto/using_zip_iterator.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/howto/using_zip_iterator.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::External > >; TString = seqan::String, seqan::External > >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:186:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const TText&, const TAlgSpec&, seqan::False) [with TSA = seqan::String >, seqan::External > >; TText = seqan::StringSet, seqan::External > >, seqan::Owner<> >; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::External > >, seqan::Owner<> >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:122:41: required from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >; seqan::Iter > >::TSize = long unsigned int]' +/build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:12:43: required from 'void findMUMs(TIndex&, unsigned int) [with TIndex = seqan::Index, seqan::External > >, seqan::Owner<> >, seqan::IndexEsa<> >]' +/build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:72:13: required from 'int runMummy(int, const char**, unsigned int, unsigned int) [with TSpec = seqan::External >]' +/build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:149:69: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:3: @@ -92555,6 +92626,114 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]; seqan::FinderMlr = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:31: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]; seqan::FinderMlr = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:31: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]; seqan::FinderMlr = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:31: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]; seqan::FinderMlr = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:31: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 762 | *cur = Val_; + | ~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' @@ -92688,114 +92867,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:414:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]; seqan::FinderMlr = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:31: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:415:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]; seqan::FinderMlr = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:31: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:432:33: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]; seqan::FinderMlr = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:31: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:443:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:294:20: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:107:22: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]; seqan::FinderMlr = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:31: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pipe_base.h:762:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 762 | *cur = Val_; - | ~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: @@ -93095,6 +93166,60 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]; seqan::FinderMlr = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:31: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 311 | buffer[pool.handlerArgs(Val_)] = Val_; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]; seqan::FinderMlr = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]]' +/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:31: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 517 | *cb.cur = item; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(seqan::Buffer >&, seqan::BufferHandler >, seqan::Tag >&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >; typename TConfig::File = seqan::File >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:332:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; seqan::BufferHandler, seqan::Tag >::TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' @@ -93150,63 +93275,6 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]; seqan::FinderMlr = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:31: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:311:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 311 | buffer[pool.handlerArgs(Val_)] = Val_; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:623:43: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:1167:16: required from 'void seqan::push(seqan::Pool&, const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:614:26: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index_esa.h:60:21: required from 'void seqan::_findFirstIndex(seqan::Finder, TSpecFinder>&, const TPattern&, FinderMlr) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]; seqan::FinderMlr = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:275:28: required from 'bool seqan::find(seqan::Finder, TSpecFinder>&, const TPattern&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; TPattern = char [3]]' -/build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:23:31: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:517:21: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 517 | *cb.cur = item; - | ~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -[ 60%] Linking CXX executable ../bin/demo_unassigned_or_unused_rooted_iterator -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o -o ../bin/demo_unassigned_or_unused_rooted_iterator -lrt -lz -lbz2 -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' @@ -93286,13 +93354,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 60%] Built target demo_unassigned_or_unused_rooted_iterator -make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: @@ -93348,15 +93409,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 60%] Linking CXX executable ../bin/demo_dox_sequence_string -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_string.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_string.dir/dox/sequence/string.cpp.o -o ../bin/demo_dox_sequence_string -lrt -lz -lbz2 -Scanning dependencies of target demo_dox_align_align -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 60%] Building CXX object demos/CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/align/align.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: @@ -93411,13 +93463,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 60%] Built target demo_dox_sequence_string -make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:3: @@ -93459,7 +93504,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -Scanning dependencies of target demo_tutorial_indices_find2_index_approx In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:3: @@ -93474,11 +93518,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 60%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/mummy.cpp:3: @@ -93534,6 +93573,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +[ 60%] Linking CXX executable ../bin/demo_dox_sequence_string +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_string.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_string.dir/dox/sequence/string.cpp.o -o ../bin/demo_dox_sequence_string -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: @@ -93589,6 +93631,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 60%] Built target demo_dox_sequence_string +make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/depend.internal". +Scanning dependencies of target demo_dox_align_align +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 60%] Building CXX object demos/CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/align/align.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_find_stringset.cpp:3: @@ -93649,6 +93704,22 @@ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_blast_blast_in_lowlevel.dir/blast/blast_in_lowlevel.cpp.o -o ../bin/demo_blast_blast_in_lowlevel -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 61%] Built target demo_blast_blast_in_lowlevel +make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/depend.internal". +Scanning dependencies of target demo_tutorial_indices_find2_index_approx +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 61%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp +[ 62%] Linking CXX executable ../bin/demo_dox_align_global_alignment_unbanded +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/dox/align/global_alignment_unbanded.cpp.o -o ../bin/demo_dox_align_global_alignment_unbanded -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 62%] Built target demo_dox_align_global_alignment_unbanded make -f demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/DependInfo.cmake --color= @@ -93658,13 +93729,13 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 61%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/unassigned_or_unused/annotation_converter.cpp.o +[ 62%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/unassigned_or_unused/annotation_converter.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/unassigned_or_unused/annotation_converter.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/annotation_converter.cpp -[ 62%] Linking CXX executable ../bin/demo_dox_align_global_alignment_unbanded -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/dox/align/global_alignment_unbanded.cpp.o -o ../bin/demo_dox_align_global_alignment_unbanded -lrt -lz -lbz2 +[ 62%] Linking CXX executable ../bin/demo_unassigned_or_unused_rooted_iterator +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/unassigned_or_unused/rooted_iterator.cpp.o -o ../bin/demo_unassigned_or_unused_rooted_iterator -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 62%] Built target demo_dox_align_global_alignment_unbanded +[ 62%] Built target demo_unassigned_or_unused_rooted_iterator make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/DependInfo.cmake --color= @@ -93830,6 +93901,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +[ 62%] Linking CXX executable ../bin/demo_tutorial_vcf_io_solution1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_vcf_io_solution1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o -o ../bin/demo_tutorial_vcf_io_solution1 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:5: @@ -93965,6 +94039,17 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 62%] Built target demo_tutorial_vcf_io_solution1 +make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/depend.internal". +Scanning dependencies of target demo_dox_basic_simple_type_construction +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:5: @@ -94019,6 +94104,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +[ 62%] Building CXX object demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/basic/simple_type_construction.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/find2_index_approx.cpp:5: @@ -94210,22 +94297,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 62%] Linking CXX executable ../bin/demo_tutorial_vcf_io_solution1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_vcf_io_solution1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_vcf_io_solution1.dir/tutorial/vcf_io/solution1.cpp.o -o ../bin/demo_tutorial_vcf_io_solution1 -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 62%] Built target demo_tutorial_vcf_io_solution1 -make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/depend.internal". -Scanning dependencies of target demo_dox_basic_simple_type_construction -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 62%] Building CXX object demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/basic/simple_type_construction.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, @@ -94238,6 +94309,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +[ 62%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_4_workshop_solution +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/tutorial/string_sets/assignment_4_workshop_solution.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_4_workshop_solution -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -94265,6 +94339,17 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 62%] Built target demo_tutorial_string_sets_assignment_4_workshop_solution +make -f demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/depend.internal". +Scanning dependencies of target demo_tutorial_indices_assignment_1 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -94292,6 +94377,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 62%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/tutorial/indices/assignment_1.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indices_assignment_1.dir/tutorial/indices/assignment_1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_1.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -94403,6 +94490,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 62%] Linking CXX executable ../bin/demo_dox_basic_simple_type_construction +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_simple_type_construction.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o -o ../bin/demo_dox_basic_simple_type_construction -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/annotation_converter.cpp:4: @@ -94422,23 +94512,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -[ 62%] Linking CXX executable ../bin/demo_tutorial_string_sets_assignment_4_workshop_solution -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/tutorial/string_sets/assignment_4_workshop_solution.cpp.o -o ../bin/demo_tutorial_string_sets_assignment_4_workshop_solution -lrt -lz -lbz2 -[ 62%] Linking CXX executable ../bin/demo_dox_align_align -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_align.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o -o ../bin/demo_dox_align_align -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 62%] Built target demo_tutorial_string_sets_assignment_4_workshop_solution -make -f demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/depend +[ 62%] Built target demo_dox_basic_simple_type_construction +make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/depend.internal". -Scanning dependencies of target demo_tutorial_indices_assignment_1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/depend.internal". +Scanning dependencies of target demo_dox_align_compute_alignment_stats make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build +make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 62%] Building CXX object demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/dox/align/compute_alignment_stats.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_compute_alignment_stats.dir/dox/align/compute_alignment_stats.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/align/compute_alignment_stats.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, @@ -94460,31 +94546,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_suffix.h:129:5: note: because 'seqan::Segment >, seqan::SuffixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 129 | operator = (Segment const & source) | ^~~~~~~~ -[ 62%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/tutorial/indices/assignment_1.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indices_assignment_1.dir/tutorial/indices/assignment_1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_1.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 62%] Built target demo_dox_align_align -make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/depend.internal". -Scanning dependencies of target demo_dox_align_compute_alignment_stats -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 62%] Building CXX object demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/dox/align/compute_alignment_stats.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_compute_alignment_stats.dir/dox/align/compute_alignment_stats.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/align/compute_alignment_stats.cpp -[ 62%] Linking CXX executable ../bin/demo_dox_basic_simple_type_construction -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_simple_type_construction.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_simple_type_construction.dir/dox/basic/simple_type_construction.cpp.o -o ../bin/demo_dox_basic_simple_type_construction -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 62%] Built target demo_dox_basic_simple_type_construction -make -f demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/annotation_converter.cpp:4: @@ -94514,6 +94575,16 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::SuffixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::SuffixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +[ 62%] Linking CXX executable ../bin/demo_dox_align_align +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_align.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_align.dir/dox/align/align.cpp.o -o ../bin/demo_dox_align_align -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 62%] Built target demo_dox_align_align +make -f demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/depend.internal". Scanning dependencies of target demo_unassigned_or_unused_index_sufarray make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build @@ -94660,30 +94731,30 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 62%] Building CXX object demos/CMakeFiles/demo_dox_index_find_repeats.dir/dox/index/find_repeats.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_find_repeats.dir/dox/index/find_repeats.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/find_repeats.cpp +[ 62%] Linking CXX executable ../bin/demo_dox_align_profile_profile_seq_score +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/dox/align_profile/profile_seq_score.cpp.o -o ../bin/demo_dox_align_profile_profile_seq_score -lrt -lz -lbz2 [ 62%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_sufarray cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/unassigned_or_unused/index_sufarray.cpp.o -o ../bin/demo_unassigned_or_unused_index_sufarray -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 62%] Built target demo_unassigned_or_unused_index_sufarray +[ 62%] Built target demo_dox_align_profile_profile_seq_score make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/depend.internal". +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_assignment2_solution make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 63%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment2_solution.cpp -[ 63%] Linking CXX executable ../bin/demo_dox_align_profile_profile_seq_score -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/dox/align_profile/profile_seq_score.cpp.o -o ../bin/demo_dox_align_profile_profile_seq_score -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 63%] Built target demo_dox_align_profile_profile_seq_score +[ 62%] Built target demo_unassigned_or_unused_index_sufarray make -f demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/DependInfo.cmake --color= +[ 63%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment2_solution.cpp Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/depend.internal". Scanning dependencies of target demo_dox_graph_algorithms_heaviest_increasing_subsequence @@ -95010,9 +95081,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 63%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_find_stringset -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o -o ../bin/demo_unassigned_or_unused_index_find_stringset -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -95041,19 +95109,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 63%] Built target demo_unassigned_or_unused_index_find_stringset -make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/depend.internal". -Scanning dependencies of target demo_tutorial_journaled_set_example_join -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 63%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/tutorial/journaled_set/example_join.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_example_join.dir/tutorial/journaled_set/example_join.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_join.cpp +[ 63%] Linking CXX executable ../bin/demo_unassigned_or_unused_index_find_stringset +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/unassigned_or_unused/index_find_stringset.cpp.o -o ../bin/demo_unassigned_or_unused_index_find_stringset -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/dox/statistics/load_markov_model.cpp:4: @@ -95073,11 +95131,24 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example7.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 63%] Built target demo_unassigned_or_unused_index_find_stringset +make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/depend.internal". +Scanning dependencies of target demo_tutorial_journaled_set_example_join +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 63%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/tutorial/journaled_set/example_join.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_example_join.dir/tutorial/journaled_set/example_join.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/example_join.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sam_and_bam_io/example7.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -95137,27 +95208,27 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -[ 64%] Linking CXX executable ../bin/demo_tutorial_indices_find2_index_approx -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o -o ../bin/demo_tutorial_indices_find2_index_approx -lrt -lz -lbz2 -[ 64%] Linking CXX executable ../bin/demo_dox_statistics_load_markov_model -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 63%] Linking CXX executable ../bin/demo_dox_statistics_load_markov_model cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_statistics_load_markov_model.dir/link.txt --verbose=1 -[ 64%] Built target demo_tutorial_indices_find2_index_approx +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_statistics_load_markov_model.dir/dox/statistics/load_markov_model.cpp.o -o ../bin/demo_dox_statistics_load_markov_model -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 63%] Built target demo_dox_statistics_load_markov_model make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/DependInfo.cmake --color= -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_statistics_load_markov_model.dir/dox/statistics/load_markov_model.cpp.o -o ../bin/demo_dox_statistics_load_markov_model -lrt -lz -lbz2 Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/depend.internal". Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_base make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 64%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/tutorial/parsing_command_line_arguments/base.cpp.o +[ 63%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/tutorial/parsing_command_line_arguments/base.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/tutorial/parsing_command_line_arguments/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/base.cpp +[ 64%] Linking CXX executable ../bin/demo_tutorial_indices_find2_index_approx +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/tutorial/indices/find2_index_approx.cpp.o -o ../bin/demo_tutorial_indices_find2_index_approx -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 64%] Built target demo_dox_statistics_load_markov_model +[ 64%] Built target demo_tutorial_indices_find2_index_approx make -f demos/CMakeFiles/demo_dox_index_counting.dir/build.make demos/CMakeFiles/demo_dox_index_counting.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_counting.dir/DependInfo.cmake --color= @@ -95531,43 +95602,43 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 64%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_base +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/tutorial/parsing_command_line_arguments/base.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_base -lrt -lz -lbz2 [ 64%] Linking CXX executable ../bin/demo_tutorial_journaled_set_example_join cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_example_join.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_example_join.dir/tutorial/journaled_set/example_join.cpp.o -o ../bin/demo_tutorial_journaled_set_example_join -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 64%] Built target demo_tutorial_journaled_set_example_join +[ 64%] Built target demo_tutorial_parsing_command_line_arguments_base make -f demos/CMakeFiles/demo_tutorial_indices_base.dir/build.make demos/CMakeFiles/demo_tutorial_indices_base.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_base.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_base.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_base.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_base.dir/depend.internal". +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 64%] Built target demo_tutorial_journaled_set_example_join Scanning dependencies of target demo_tutorial_indices_base make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_base.dir/build.make demos/CMakeFiles/demo_tutorial_indices_base.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 64%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_base.dir/tutorial/indices/base.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indices_base.dir/tutorial/indices/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp -[ 64%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_base -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/tutorial/parsing_command_line_arguments/base.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_base -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 64%] Built target demo_tutorial_parsing_command_line_arguments_base make -f demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/DependInfo.cmake --color= +[ 64%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_base.dir/tutorial/indices/base.cpp.o Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/depend.internal". +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indices_base.dir/tutorial/indices/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp Scanning dependencies of target demo_dox_graph_algorithms_breadth_first_search make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/dox/graph_algorithms/breadth_first_search.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/dox/graph_algorithms/breadth_first_search.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/breadth_first_search.cpp -[ 64%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment2_solution -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment2_solution -lrt -lz -lbz2 +[ 64%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_example7 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/tutorial/sam_and_bam_io/example7.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_example7 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 64%] Built target demo_tutorial_parsing_command_line_arguments_assignment2_solution +[ 64%] Built target demo_tutorial_sam_and_bam_io_example7 make -f demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/DependInfo.cmake --color= @@ -95579,9 +95650,22 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/dox/graph_algorithms/floyd_warshall_algorithm.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/dox/graph_algorithms/floyd_warshall_algorithm.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/floyd_warshall_algorithm.cpp -[ 64%] Linking CXX executable ../bin/demo_tutorial_sam_and_bam_io_example7 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/tutorial/sam_and_bam_io/example7.cpp.o -o ../bin/demo_tutorial_sam_and_bam_io_example7 -lrt -lz -lbz2 +[ 64%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment2_solution +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/tutorial/parsing_command_line_arguments/assignment2_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment2_solution -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 64%] Built target demo_tutorial_parsing_command_line_arguments_assignment2_solution +make -f demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make demos/CMakeFiles/demo_tutorial_basics_strings.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/depend.internal". +Scanning dependencies of target demo_tutorial_basics_strings +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make demos/CMakeFiles/demo_tutorial_basics_strings.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 64%] Building CXX object demos/CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/basics/strings.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/dox/bam_io/bam_file_in.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': @@ -95606,17 +95690,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 64%] Built target demo_tutorial_sam_and_bam_io_example7 -make -f demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make demos/CMakeFiles/demo_tutorial_basics_strings.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/depend.internal". -Scanning dependencies of target demo_tutorial_basics_strings -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make demos/CMakeFiles/demo_tutorial_basics_strings.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/dox/bam_io/bam_file_in.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': @@ -95642,8 +95715,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 64%] Building CXX object demos/CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/basics/strings.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -95706,38 +95777,44 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/dox/sequence/UNUSED_suffix.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/dox/sequence/UNUSED_suffix.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/sequence/UNUSED_suffix.cpp -[ 64%] Linking CXX executable ../bin/demo_dox_graph_algorithms_breadth_first_search -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/dox/graph_algorithms/breadth_first_search.cpp.o -o ../bin/demo_dox_graph_algorithms_breadth_first_search -lrt -lz -lbz2 [ 64%] Linking CXX executable ../bin/demo_dox_index_mummy cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_mummy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_mummy.dir/dox/index/mummy.cpp.o -o ../bin/demo_dox_index_mummy -lrt -lz -lbz2 +[ 64%] Linking CXX executable ../bin/demo_dox_graph_algorithms_breadth_first_search +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/dox/graph_algorithms/breadth_first_search.cpp.o -o ../bin/demo_dox_graph_algorithms_breadth_first_search -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target demo_dox_graph_algorithms_breadth_first_search make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/depend.internal". -Scanning dependencies of target demo_tutorial_sequence_io_solution2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 64%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/DependInfo.cmake --color= [ 64%] Built target demo_dox_index_mummy make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/depend +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/depend.internal". make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/depend.internal". +Scanning dependencies of target demo_tutorial_sequence_io_solution2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_indexed_fasta_io_base make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 64%] Building CXX object demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp [ 64%] Building CXX object demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/tutorial/indexed_fasta_io/base.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/tutorial/indexed_fasta_io/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp +[ 64%] Linking CXX executable ../bin/demo_tutorial_bed_io_base +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_base.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_base.dir/tutorial/bed_io/base.cpp.o -o ../bin/demo_tutorial_bed_io_base -lrt -lz -lbz2 +[ 64%] Linking CXX executable ../bin/demo_dox_graph_algorithms_floyd_warshall_algorithm +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/dox/graph_algorithms/floyd_warshall_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_floyd_warshall_algorithm -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -95759,9 +95836,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::String, seqan::Alloc<> >; TSpec = void]' 429 | Index(Index const &other): | ^~~~~ -[ 64%] Linking CXX executable ../bin/demo_tutorial_bed_io_base -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_base.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_base.dir/tutorial/bed_io/base.cpp.o -o ../bin/demo_tutorial_bed_io_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target demo_tutorial_bed_io_base make -f demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build.make demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/depend @@ -95775,9 +95849,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/dox/misc/get_terminal_size.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_misc_get_terminal_size.dir/dox/misc/get_terminal_size.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/misc/get_terminal_size.cpp -[ 64%] Linking CXX executable ../bin/demo_dox_graph_algorithms_floyd_warshall_algorithm -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/dox/graph_algorithms/floyd_warshall_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_floyd_warshall_algorithm -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target demo_dox_graph_algorithms_floyd_warshall_algorithm make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/depend @@ -95791,6 +95862,14 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 65%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/dox/graph_algorithms/longest_common_subsequence.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/dox/graph_algorithms/longest_common_subsequence.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/longest_common_subsequence.cpp +[ 65%] Linking CXX executable ../bin/demo_dox_misc_get_terminal_size +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_get_terminal_size.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_get_terminal_size.dir/dox/misc/get_terminal_size.cpp.o -o ../bin/demo_dox_misc_get_terminal_size -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 65%] Built target demo_dox_misc_get_terminal_size +make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:3: @@ -95815,6 +95894,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/depend.internal". +Scanning dependencies of target demo_tutorial_file_io_overview_solution2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:3: @@ -95839,20 +95924,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 65%] Linking CXX executable ../bin/demo_dox_misc_get_terminal_size -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_misc_get_terminal_size.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_misc_get_terminal_size.dir/dox/misc/get_terminal_size.cpp.o -o ../bin/demo_dox_misc_get_terminal_size -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 65%] Built target demo_dox_misc_get_terminal_size -make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/depend.internal". -Scanning dependencies of target demo_tutorial_file_io_overview_solution2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 65%] Building CXX object demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/tutorial/file_io_overview/solution2.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/tutorial/file_io_overview/solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, @@ -96132,6 +96203,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +[ 65%] Linking CXX executable ../bin/demo_unassigned_or_unused_benchmark_stream_write +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/unassigned_or_unused/benchmark_stream_write.cpp.o -o ../bin/demo_unassigned_or_unused_benchmark_stream_write -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:3: @@ -96184,9 +96258,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 65%] Linking CXX executable ../bin/demo_unassigned_or_unused_benchmark_stream_write -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/unassigned_or_unused/benchmark_stream_write.cpp.o -o ../bin/demo_unassigned_or_unused_benchmark_stream_write -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 65%] Built target demo_unassigned_or_unused_benchmark_stream_write make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/depend @@ -96200,6 +96271,9 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 65%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step2.cpp +[ 65%] Linking CXX executable ../bin/demo_dox_sequence_UNUSED_suffix +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/dox/sequence/UNUSED_suffix.cpp.o -o ../bin/demo_dox_sequence_UNUSED_suffix -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:3: @@ -96226,6 +96300,17 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 65%] Built target demo_dox_sequence_UNUSED_suffix +make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/depend.internal". +Scanning dependencies of target demo_dox_graph_algorithms_longest_increasing_subsequence +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:3: @@ -96278,9 +96363,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 65%] Linking CXX executable ../bin/demo_dox_sequence_UNUSED_suffix -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/dox/sequence/UNUSED_suffix.cpp.o -o ../bin/demo_dox_sequence_UNUSED_suffix -lrt -lz -lbz2 +[ 65%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/dox/graph_algorithms/longest_increasing_subsequence.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/dox/graph_algorithms/longest_increasing_subsequence.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/longest_increasing_subsequence.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:3: @@ -96333,11 +96417,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 65%] Built target demo_dox_sequence_UNUSED_suffix -make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:3: @@ -96390,14 +96469,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/depend.internal". -Scanning dependencies of target demo_dox_graph_algorithms_longest_increasing_subsequence -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 65%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/dox/graph_algorithms/longest_increasing_subsequence.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/dox/graph_algorithms/longest_increasing_subsequence.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/longest_increasing_subsequence.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/base.cpp:3: @@ -96452,7 +96523,7 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:1: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -96465,7 +96536,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:1: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ @@ -96473,13 +96544,13 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:1: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -96492,7 +96563,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ @@ -96500,7 +96571,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -96619,7 +96690,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:1: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' @@ -96634,7 +96705,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:1: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ @@ -96642,7 +96713,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' @@ -96657,7 +96728,7 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/base.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequence_io/solution2.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ @@ -96852,16 +96923,16 @@ [ 67%] Linking CXX executable ../bin/demo_tutorial_indexed_fasta_io_base cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/tutorial/indexed_fasta_io/base.cpp.o -o ../bin/demo_tutorial_indexed_fasta_io_base -lrt -lz -lbz2 +[ 67%] Linking CXX executable ../bin/demo_dox_graph_algorithms_longest_common_subsequence +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/dox/graph_algorithms/longest_common_subsequence.cpp.o -o ../bin/demo_dox_graph_algorithms_longest_common_subsequence -lrt -lz -lbz2 [ 67%] Built target demo_tutorial_indexed_fasta_io_base -[ 67%] Linking CXX executable ../bin/demo_dox_graph_algorithms_longest_common_subsequence make -f demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/DependInfo.cmake --color= -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/link.txt --verbose=1 Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/depend.internal". -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/dox/graph_algorithms/longest_common_subsequence.cpp.o -o ../bin/demo_dox_graph_algorithms_longest_common_subsequence -lrt -lz -lbz2 Scanning dependencies of target demo_tutorial_alignment_graph_assignment1 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build @@ -96906,6 +96977,36 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +[ 67%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:48, + from /build/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Vcf_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp:18:31: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:45, + from /build/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 67%] Built target demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats +make -f demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -96927,14 +97028,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::String >; TSpec = void]' 429 | Index(Index const &other): | ^~~~~ -[ 67%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/unassigned_or_unused/tutorial_file_io/stream_compression_formats.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 67%] Built target demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats -make -f demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/depend.internal". Scanning dependencies of target demo_tutorial_bed_io_solution2 @@ -96943,28 +97036,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 67%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/tutorial/bed_io/solution2.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_bed_io_solution2.dir/tutorial/bed_io/solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution2.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:48, - from /build/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Vcf_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp:18:31: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/vcf_io.h:45, - from /build/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/demos/tabix_io/tabix_vcf.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': @@ -97109,6 +97180,8 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/dox/index/begin_atEnd_representative_bottomUp.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/dox/index/begin_atEnd_representative_bottomUp.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative_bottomUp.cpp +[ 69%] Linking CXX executable ../bin/demo_dox_graph_algorithms_strongly_connected_components +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/link.txt --verbose=1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/example2.cpp:5: @@ -97119,8 +97192,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 69%] Linking CXX executable ../bin/demo_dox_graph_algorithms_strongly_connected_components -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/dox/graph_algorithms/strongly_connected_components.cpp.o -o ../bin/demo_dox_graph_algorithms_strongly_connected_components -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 69%] Built target demo_dox_graph_algorithms_strongly_connected_components @@ -97133,19 +97204,16 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 69%] Linking CXX executable ../bin/demo_tabix_io_tabix_vcf +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tabix_io_tabix_vcf.dir/link.txt --verbose=1 [ 69%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_base.dir/tutorial/string_sets/base.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_string_sets_base.dir/tutorial/string_sets/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/base.cpp -[ 69%] Linking CXX executable ../bin/demo_dox_graph_algorithms_topological_sort -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/dox/graph_algorithms/topological_sort.cpp.o -o ../bin/demo_dox_graph_algorithms_topological_sort -lrt -lz -lbz2 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tabix_io_tabix_vcf.dir/tabix_io/tabix_vcf.cpp.o -o ../bin/demo_tabix_io_tabix_vcf -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 69%] Linking CXX executable ../bin/demo_tabix_io_tabix_vcf -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tabix_io_tabix_vcf.dir/link.txt --verbose=1 -[ 69%] Built target demo_dox_graph_algorithms_topological_sort +[ 69%] Built target demo_tabix_io_tabix_vcf make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/DependInfo.cmake --color= -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tabix_io_tabix_vcf.dir/tabix_io/tabix_vcf.cpp.o -o ../bin/demo_tabix_io_tabix_vcf -lrt -lz -lbz2 Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/depend.internal". Scanning dependencies of target demo_tutorial_a_first_example_example_tags @@ -97157,6 +97225,9 @@ [ 69%] Linking CXX executable ../bin/demo_tutorial_a_first_example_example_tags cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/tutorial/a_first_example/example_tags.cpp.o -o ../bin/demo_tutorial_a_first_example_example_tags -lrt -lz -lbz2 +[ 69%] Linking CXX executable ../bin/demo_dox_graph_algorithms_topological_sort +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/dox/graph_algorithms/topological_sort.cpp.o -o ../bin/demo_dox_graph_algorithms_topological_sort -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 69%] Built target demo_tutorial_a_first_example_example_tags make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/depend @@ -97164,17 +97235,17 @@ cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/depend.internal". -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_index_iterators_iterator_solution1 -[ 69%] Built target demo_tabix_io_tabix_vcf make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build -make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 69%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/tutorial/index_iterators/iterator_solution1.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/tutorial/index_iterators/iterator_solution1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp +[ 69%] Built target demo_dox_graph_algorithms_topological_sort +make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/depend.internal". Scanning dependencies of target demo_dox_index_UNUSED_shape_hash @@ -97472,6 +97543,64 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +[ 70%] Linking CXX executable ../bin/demo_dox_index_UNUSED_shape_hash +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/dox/index/UNUSED_shape_hash.cpp.o -o ../bin/demo_dox_index_UNUSED_shape_hash -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 70%] Built target demo_dox_index_UNUSED_shape_hash +make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/depend.internal". +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::MySeqFormat_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': @@ -97481,16 +97610,182 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 70%] Linking CXX executable ../bin/demo_dox_index_UNUSED_shape_hash -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/dox/index/UNUSED_shape_hash.cpp.o -o ../bin/demo_dox_index_UNUSED_shape_hash -lrt -lz -lbz2 +Scanning dependencies of target demo_dox_index_open_save +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 70%] Building CXX object demos/CMakeFiles/demo_dox_index_open_save.dir/dox/index/open_save.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_open_save.dir/dox/index/open_save.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +[ 70%] Linking CXX executable ../bin/demo_dox_index_begin_atEnd_representative_bottomUp +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/dox/index/begin_atEnd_representative_bottomUp.cpp.o -o ../bin/demo_dox_index_begin_atEnd_representative_bottomUp -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 70%] Built target demo_dox_index_begin_atEnd_representative_bottomUp +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/DependInfo.cmake --color= +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/depend.internal". +Scanning dependencies of target demo_tutorial_iterators_assignment_3_workshop_solution +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 70%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/assignment_3_workshop_solution.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/assignment_3_workshop_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_3_workshop_solution.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -97554,37 +97849,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::MySeqFormat_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 70%] Built target demo_dox_index_UNUSED_shape_hash -make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::String >; TIndexSpec = void; TSpec = seqan::ParentLinks<>; TDfsOrder = seqan::Preorder_]': @@ -97631,62 +97895,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -Scanning dependencies of target demo_dox_index_open_save -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 70%] Building CXX object demos/CMakeFiles/demo_dox_index_open_save.dir/dox/index/open_save.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_open_save.dir/dox/index/open_save.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFastq_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]': @@ -97761,27 +97969,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/dox/index/begin_atEnd_representative.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >; TSpec = seqan::TopDown<>]': @@ -97819,122 +98006,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::GenBank_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 70%] Linking CXX executable ../bin/demo_dox_index_begin_atEnd_representative_bottomUp -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/dox/index/begin_atEnd_representative_bottomUp.cpp.o -o ../bin/demo_dox_index_begin_atEnd_representative_bottomUp -lrt -lz -lbz2 -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Raw_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:66:37: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/howto/custom_file_endings.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 70%] Built target demo_dox_index_begin_atEnd_representative_bottomUp -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/depend.internal". -Scanning dependencies of target demo_tutorial_iterators_assignment_3_workshop_solution -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 70%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/assignment_3_workshop_solution.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/assignment_3_workshop_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_3_workshop_solution.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution1.cpp:2: @@ -98585,22 +98656,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 70%] Linking CXX executable ../bin/demo_dox_index_begin_atEnd_representative -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/dox/index/begin_atEnd_representative.cpp.o -o ../bin/demo_dox_index_begin_atEnd_representative -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 70%] Built target demo_dox_index_begin_atEnd_representative -make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/depend.internal". -Scanning dependencies of target demo_tutorial_index_iterators_index_property_maps -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 70%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': @@ -98615,6 +98670,22 @@ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/unassigned_or_unused/graph_hmm_silent.cpp.o -o ../bin/demo_unassigned_or_unused_graph_hmm_silent -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 70%] Built target demo_unassigned_or_unused_graph_hmm_silent +make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/depend.internal". +[ 70%] Linking CXX executable ../bin/demo_dox_index_begin_atEnd_representative +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/dox/index/begin_atEnd_representative.cpp.o -o ../bin/demo_dox_index_begin_atEnd_representative -lrt -lz -lbz2 +Scanning dependencies of target demo_tutorial_index_iterators_index_property_maps +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 70%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 70%] Built target demo_dox_index_begin_atEnd_representative make -f demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build.make demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/DependInfo.cmake --color= @@ -98628,33 +98699,33 @@ cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp [ 70%] Linking CXX executable ../bin/demo_dox_align_split_split_alignment cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_split_split_alignment.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_split_split_alignment.dir/dox/align_split/split_alignment.cpp.o -o ../bin/demo_dox_align_split_split_alignment -lrt -lz -lbz2 [ 72%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_3_workshop_solution cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_split_split_alignment.dir/dox/align_split/split_alignment.cpp.o -o ../bin/demo_dox_align_split_split_alignment -lrt -lz -lbz2 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/assignment_3_workshop_solution.cpp.o -o ../bin/demo_tutorial_iterators_assignment_3_workshop_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 72%] Built target demo_tutorial_iterators_assignment_3_workshop_solution +[ 72%] Built target demo_dox_align_split_split_alignment make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/depend.internal". make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 72%] Built target demo_dox_align_split_split_alignment +[ 72%] Built target demo_tutorial_iterators_assignment_3_workshop_solution make -f demos/CMakeFiles/demo_dox_index_iterator.dir/build.make demos/CMakeFiles/demo_dox_index_iterator.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator.dir/depend.internal". Scanning dependencies of target demo_dox_align_profile_profile_seq_frac_score make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator.dir/depend.internal". make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 72%] Building CXX object demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/align_profile/profile_seq_frac_score.cpp Scanning dependencies of target demo_dox_index_iterator make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_iterator.dir/build.make demos/CMakeFiles/demo_dox_index_iterator.dir/build -[ 72%] Building CXX object demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/align_profile/profile_seq_frac_score.cpp make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_dox_index_iterator.dir/dox/index/iterator.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_iterator.dir/dox/index/iterator.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/iterator.cpp @@ -99080,15 +99151,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:1: @@ -99198,33 +99260,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:40:98: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:1: @@ -99280,52 +99315,15 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:40:98: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:40:98: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/open_save.cpp:1: @@ -99381,6 +99379,79 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:40:98: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:40:98: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:40:98: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_property_maps.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]': @@ -99574,14 +99645,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 73%] Building CXX object demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/dox/basic/metaprogramming_switch.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/dox/basic/metaprogramming_switch.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/basic/metaprogramming_switch.cpp -[ 73%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_property_maps -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o -o ../bin/demo_tutorial_index_iterators_index_property_maps -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 73%] Built target demo_tutorial_index_iterators_index_property_maps -make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: @@ -99608,17 +99671,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/depend.internal". -[ 73%] Linking CXX executable ../bin/demo_howto_custom_file_endings -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_custom_file_endings.dir/link.txt --verbose=1 -Scanning dependencies of target demo_tutorial_string_sets_example_iterators -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_custom_file_endings.dir/howto/custom_file_endings.cpp.o -o ../bin/demo_howto_custom_file_endings -lrt -lz -lbz2 -[ 73%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_iterators.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: @@ -99727,7 +99779,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 73%] Linking CXX executable ../bin/demo_howto_custom_file_endings +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_custom_file_endings.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_howto_custom_file_endings.dir/howto/custom_file_endings.cpp.o -o ../bin/demo_howto_custom_file_endings -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: @@ -99755,15 +99809,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 73%] Built target demo_howto_custom_file_endings -make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/depend.internal". -Scanning dependencies of target demo_tutorial_indexed_fasta_io_solution1 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: @@ -99818,9 +99863,25 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +[ 73%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_property_maps +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/tutorial/index_iterators/index_property_maps.cpp.o -o ../bin/demo_tutorial_index_iterators_index_property_maps -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 73%] Built target demo_howto_custom_file_endings +make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 73%] Building CXX object demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution1.cpp +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/depend.internal". +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +Scanning dependencies of target demo_tutorial_string_sets_example_iterators +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 73%] Built target demo_tutorial_index_iterators_index_property_maps +make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: @@ -99848,6 +99909,7 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +[ 73%] Building CXX object demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: @@ -99902,6 +99964,7 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/string_sets/example_iterators.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: @@ -99929,6 +99992,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: @@ -99956,6 +100021,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +Scanning dependencies of target demo_tutorial_indexed_fasta_io_solution1 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 73%] Building CXX object demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution1.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: @@ -100037,6 +100108,18 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, + from /build/seqan2-2.4.0+dfsg/include/seqan/align_profile.h:46, + from /build/seqan2-2.4.0+dfsg/demos/dox/align_profile/profile_seq_frac_score.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: @@ -100146,28 +100229,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, - from /build/seqan2-2.4.0+dfsg/include/seqan/align_profile.h:46, - from /build/seqan2-2.4.0+dfsg/demos/dox/align_profile/profile_seq_frac_score.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -[ 74%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_switch -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/dox/basic/metaprogramming_switch.cpp.o -o ../bin/demo_dox_basic_metaprogramming_switch -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 74%] Built target demo_dox_basic_metaprogramming_switch -make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: @@ -100223,12 +100284,16 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -Scanning dependencies of target demo_tutorial_alphabets_assignment_1_solution +[ 74%] Linking CXX executable ../bin/demo_dox_basic_metaprogramming_switch +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/dox/basic/metaprogramming_switch.cpp.o -o ../bin/demo_dox_basic_metaprogramming_switch -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build +[ 74%] Built target demo_dox_basic_metaprogramming_switch +make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 74%] Building CXX object demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/tutorial/alphabets/assignment_1_solution.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/tutorial/alphabets/assignment_1_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/assignment_1_solution.cpp +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/index/getOccurrences_getFrequency_range_getFibre.cpp:1: @@ -100284,6 +100349,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +Scanning dependencies of target demo_tutorial_alphabets_assignment_1_solution +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 74%] Building CXX object demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/tutorial/alphabets/assignment_1_solution.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/tutorial/alphabets/assignment_1_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/assignment_1_solution.cpp [ 74%] Linking CXX executable ../bin/demo_dox_index_iterator cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_iterator.dir/dox/index/iterator.cpp.o -o ../bin/demo_dox_index_iterator -lrt -lz -lbz2 @@ -100303,19 +100374,6 @@ [ 74%] Linking CXX executable ../bin/demo_tutorial_alphabets_assignment_1_solution cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/tutorial/alphabets/assignment_1_solution.cpp.o -o ../bin/demo_tutorial_alphabets_assignment_1_solution -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 74%] Built target demo_tutorial_alphabets_assignment_1_solution -make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/depend.internal". -Scanning dependencies of target demo_tutorial_blast_io_read_assignment -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 74%] Building CXX object demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/tutorial/blast_io/read_assignment.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/tutorial/blast_io/read_assignment.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/read_assignment.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -100345,6 +100403,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 74%] Built target demo_tutorial_alphabets_assignment_1_solution +make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/depend.internal". +Scanning dependencies of target demo_tutorial_blast_io_read_assignment +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 74%] Building CXX object demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/tutorial/blast_io/read_assignment.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/tutorial/blast_io/read_assignment.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/blast_io/read_assignment.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -100398,24 +100469,30 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -[ 74%] Linking CXX executable ../bin/demo_tutorial_string_sets_example_iterators -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o -o ../bin/demo_tutorial_string_sets_example_iterators -lrt -lz -lbz2 [ 75%] Linking CXX executable ../bin/demo_tutorial_alphabets_example_bitsPerValue cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/tutorial/alphabets/example_bitsPerValue.cpp.o -o ../bin/demo_tutorial_alphabets_example_bitsPerValue -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 75%] Built target demo_tutorial_string_sets_example_iterators +[ 75%] Built target demo_tutorial_alphabets_example_bitsPerValue make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/DependInfo.cmake --color= -[ 75%] Built target demo_tutorial_alphabets_example_bitsPerValue +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/depend.internal". +Scanning dependencies of target demo_tutorial_seed_and_extend_solution4 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 75%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution4.cpp +[ 75%] Linking CXX executable ../bin/demo_tutorial_string_sets_example_iterators +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/tutorial/string_sets/example_iterators.cpp.o -o ../bin/demo_tutorial_string_sets_example_iterators -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 75%] Built target demo_tutorial_string_sets_example_iterators make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/depend.internal". Scanning dependencies of target demo_tutorial_a_first_example_solution_2 @@ -100424,12 +100501,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/tutorial/a_first_example/solution_2.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/tutorial/a_first_example/solution_2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/solution_2.cpp -Scanning dependencies of target demo_tutorial_seed_and_extend_solution4 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 75%] Building CXX object demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution4.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/indexed_fasta_io/solution1.cpp:3: @@ -100540,9 +100611,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -[ 75%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_2 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/tutorial/a_first_example/solution_2.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_2 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/seqan2-2.4.0+dfsg/demos/tutorial/seed_and_extend/solution4.cpp:3: @@ -100553,6 +100621,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +[ 75%] Linking CXX executable ../bin/demo_tutorial_a_first_example_solution_2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/tutorial/a_first_example/solution_2.cpp.o -o ../bin/demo_tutorial_a_first_example_solution_2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target demo_tutorial_a_first_example_solution_2 make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/depend @@ -100566,11 +100637,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/tutorial/alphabets/assignment_1.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/tutorial/alphabets/assignment_1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/assignment_1.cpp -[ 75%] Linking CXX executable ../bin/demo_tutorial_indexed_fasta_io_solution1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o -o ../bin/demo_tutorial_indexed_fasta_io_solution1 -lrt -lz -lbz2 +[ 75%] Linking CXX executable ../bin/demo_dox_align_profile_profile_seq_frac_score +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o -o ../bin/demo_dox_align_profile_profile_seq_frac_score -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 75%] Built target demo_tutorial_indexed_fasta_io_solution1 +[ 75%] Built target demo_dox_align_profile_profile_seq_frac_score make -f demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/DependInfo.cmake --color= @@ -100582,11 +100653,14 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/tutorial/alphabets/example_size.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_alphabets_example_size.dir/tutorial/alphabets/example_size.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/alphabets/example_size.cpp -[ 75%] Linking CXX executable ../bin/demo_dox_align_profile_profile_seq_frac_score -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/dox/align_profile/profile_seq_frac_score.cpp.o -o ../bin/demo_dox_align_profile_profile_seq_frac_score -lrt -lz -lbz2 +[ 75%] Linking CXX executable ../bin/demo_tutorial_indexed_fasta_io_solution1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/tutorial/indexed_fasta_io/solution1.cpp.o -o ../bin/demo_tutorial_indexed_fasta_io_solution1 -lrt -lz -lbz2 +[ 75%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution4 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution4 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 75%] Built target demo_dox_align_profile_profile_seq_frac_score +[ 75%] Built target demo_tutorial_indexed_fasta_io_solution1 make -f demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build.make demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/DependInfo.cmake --color= @@ -100598,14 +100672,8 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/tutorial/background_and_motivation/example.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_background_and_motivation_example.dir/tutorial/background_and_motivation/example.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/background_and_motivation/example.cpp -[ 75%] Linking CXX executable ../bin/demo_tutorial_alphabets_assignment_1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/tutorial/alphabets/assignment_1.cpp.o -o ../bin/demo_tutorial_alphabets_assignment_1 -lrt -lz -lbz2 -[ 75%] Linking CXX executable ../bin/demo_tutorial_seed_and_extend_solution4 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o -o ../bin/demo_tutorial_seed_and_extend_solution4 -lrt -lz -lbz2 -[ 75%] Built target demo_tutorial_alphabets_assignment_1 +[ 75%] Built target demo_tutorial_seed_and_extend_solution4 make -f demos/CMakeFiles/demo_tutorial_basics_base.dir/build.make demos/CMakeFiles/demo_tutorial_basics_base.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_base.dir/DependInfo.cmake --color= @@ -100617,8 +100685,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object demos/CMakeFiles/demo_tutorial_basics_base.dir/tutorial/basics/base.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_basics_base.dir/tutorial/basics/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/basics/base.cpp +[ 75%] Linking CXX executable ../bin/demo_tutorial_alphabets_assignment_1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/tutorial/alphabets/assignment_1.cpp.o -o ../bin/demo_tutorial_alphabets_assignment_1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 75%] Built target demo_tutorial_seed_and_extend_solution4 +[ 75%] Built target demo_tutorial_alphabets_assignment_1 make -f demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/DependInfo.cmake --color= @@ -100646,11 +100717,14 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/tutorial/gff_and_gtf_io/base.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/tutorial/gff_and_gtf_io/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/base.cpp -[ 75%] Linking CXX executable ../bin/demo_tutorial_background_and_motivation_example +[ 76%] Linking CXX executable ../bin/demo_tutorial_basics_base +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_base.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_basics_base.dir/tutorial/basics/base.cpp.o -o ../bin/demo_tutorial_basics_base -lrt -lz -lbz2 +[ 76%] Linking CXX executable ../bin/demo_tutorial_background_and_motivation_example cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_background_and_motivation_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_background_and_motivation_example.dir/tutorial/background_and_motivation/example.cpp.o -o ../bin/demo_tutorial_background_and_motivation_example -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 75%] Built target demo_tutorial_background_and_motivation_example +[ 76%] Built target demo_tutorial_basics_base make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/DependInfo.cmake --color= @@ -100660,13 +100734,10 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 76%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/tutorial/index_iterators/index_search.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_search.dir/tutorial/index_iterators/index_search.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp -[ 77%] Linking CXX executable ../bin/demo_tutorial_basics_base -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_base.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_basics_base.dir/tutorial/basics/base.cpp.o -o ../bin/demo_tutorial_basics_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target demo_tutorial_basics_base +[ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/tutorial/index_iterators/index_search.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_search.dir/tutorial/index_iterators/index_search.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp +[ 77%] Built target demo_tutorial_background_and_motivation_example make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/DependInfo.cmake --color= @@ -100751,6 +100822,10 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ +[ 77%] Linking CXX executable ../bin/demo_tutorial_index_iterators_iterator_solution1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/tutorial/index_iterators/iterator_solution1.cpp.o -o ../bin/demo_tutorial_index_iterators_iterator_solution1 -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]': @@ -100765,6 +100840,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ +[ 77%] Built target demo_tutorial_index_iterators_iterator_solution1 +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/depend In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDownChar(seqan::Iter > >&, TValue) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder; TValue = char]': @@ -100779,6 +100856,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -100797,6 +100876,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >; TSpec = seqan::TopDown<>]': @@ -100812,6 +100893,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ +Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_example_with_own_function +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::String >; TIndexSpec = void; TSpec = seqan::Preorder]': @@ -100827,6 +100911,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/tutorial/parsing_command_line_arguments/example_with_own_function.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/tutorial/parsing_command_line_arguments/example_with_own_function.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example_with_own_function.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search.cpp:3: @@ -100873,22 +100960,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 77%] Linking CXX executable ../bin/demo_tutorial_index_iterators_iterator_solution1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/tutorial/index_iterators/iterator_solution1.cpp.o -o ../bin/demo_tutorial_index_iterators_iterator_solution1 -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target demo_tutorial_index_iterators_iterator_solution1 -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/depend.internal". -Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_example_with_own_function -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/tutorial/parsing_command_line_arguments/example_with_own_function.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/tutorial/parsing_command_line_arguments/example_with_own_function.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example_with_own_function.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, @@ -100975,11 +101046,8 @@ [ 77%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_search cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_search.dir/tutorial/index_iterators/index_search.cpp.o -o ../bin/demo_tutorial_index_iterators_index_search -lrt -lz -lbz2 -[ 77%] Linking CXX executable ../bin/demo_tutorial_bed_io_solution1 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_solution1.dir/link.txt --verbose=1 [ 77%] Built target demo_tutorial_index_iterators_index_search -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_solution1.dir/tutorial/bed_io/solution1.cpp.o -o ../bin/demo_tutorial_bed_io_solution1 -lrt -lz -lbz2 make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/DependInfo.cmake --color= @@ -100991,6 +101059,9 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/tutorial/pattern_matching/find_index_multiple.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/tutorial/pattern_matching/find_index_multiple.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp +[ 77%] Linking CXX executable ../bin/demo_tutorial_bed_io_solution1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_solution1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_solution1.dir/tutorial/bed_io/solution1.cpp.o -o ../bin/demo_tutorial_bed_io_solution1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target demo_tutorial_bed_io_solution1 make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/depend @@ -101663,6 +101734,15 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, @@ -101709,15 +101789,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:3: @@ -101821,6 +101892,24 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = seqan::Index > > >; TSource = seqan::Index > > >; typename seqan::DisableIf > >::Type = void]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Index > > >; TSource = seqan::Index > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Index > > >; seqan::Holder >::THostValue = seqan::Index > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:89:84: required from 'seqan::Finder, TSpecFinder>::Finder(const TIndex&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; seqan::Finder, TSpecFinder>::TIndex = seqan::Index > > >]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:18:48: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index > > >& seqan::Index > > >::operator=(const seqan::Index > > >&)' is deprecated [-Wdeprecated-copy] + 118 | target = source; + | ~~~~~~~^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index > > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' + 429 | Index(Index const &other): + | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, @@ -102002,6 +102091,27 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index > > >; TSource = seqan::Index > > >; typename seqan::DisableIf > >::Type = void]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index > > >; TValue2 = seqan::Index > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index > > >; typename seqan::Reference > >::Type = seqan::Index > > >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(seqan::Finder, TSpecFinder>&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; typename seqan::Parameter_ >::Type = seqan::Index > > >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = seqan::Finder > > > >; typename seqan::Parameter_::Type>::Type = seqan::Index > > >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:569:26: required from 'typename seqan::InfixOnValue::Type seqan::infix(seqan::Finder&) [with THaystack = seqan::Index > > >; TSpec = const seqan::Tag; typename seqan::InfixOnValue::Type = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:24:105: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index > > >& seqan::Index > > >::operator=(const seqan::Index > > >&)' is deprecated [-Wdeprecated-copy] + 110 | target = source; + | ~~~~~~~^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index > > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' + 429 | Index(Index const &other): + | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:3: @@ -102033,24 +102143,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, const TSource&) [with TTarget = seqan::Index > > >; TSource = seqan::Index > > >; typename seqan::DisableIf > >::Type = void]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:889:15: required from 'void seqan::assignValue(seqan::Holder >&, const TSource&) [with TValue = seqan::Index > > >; TSource = seqan::Index > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:135:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Index > > >; seqan::Holder >::THostValue = seqan::Index > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:89:84: required from 'seqan::Finder, TSpecFinder>::Finder(const TIndex&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; seqan::Finder, TSpecFinder>::TIndex = seqan::Index > > >]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:18:48: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:118:12: warning: implicitly-declared 'seqan::Index > > >& seqan::Index > > >::operator=(const seqan::Index > > >&)' is deprecated [-Wdeprecated-copy] - 118 | target = source; - | ~~~~~~~^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index > > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' - 429 | Index(Index const &other): - | ^~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/without_positions.cpp:3: @@ -102082,27 +102174,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:72, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h: In instantiation of 'typename seqan::DisableIf > >::Type seqan::assign(TTarget&, TSource&) [with TTarget = seqan::Index > > >; TSource = seqan::Index > > >; typename seqan::DisableIf > >::Type = void]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:645:15: required from 'void seqan::create(seqan::Holder >&, TValue2&) [with TValue = seqan::Index > > >; TValue2 = seqan::Index > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:594:19: required from 'void seqan::create(seqan::Holder >&) [with TValue = seqan::Index > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/holder_tristate.h:863:15: required from 'typename seqan::Reference > >::Type seqan::value(seqan::Holder >&) [with TValue = seqan::Index > > >; typename seqan::Reference > >::Type = seqan::Index > > >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/find_index.h:115:21: required from 'typename seqan::Parameter_ >::Type seqan::container(seqan::Finder, TSpecFinder>&) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecFinder = const seqan::Tag; typename seqan::Parameter_ >::Type = seqan::Index > > >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:904:21: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = seqan::Finder > > > >; typename seqan::Parameter_::Type>::Type = seqan::Index > > >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/find/find_base.h:569:26: required from 'typename seqan::InfixOnValue::Type seqan::infix(seqan::Finder&) [with THaystack = seqan::Index > > >; TSpec = const seqan::Tag; typename seqan::InfixOnValue::Type = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:24:105: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/fundamental_transport.h:110:12: warning: implicitly-declared 'seqan::Index > > >& seqan::Index > > >::operator=(const seqan::Index > > >&)' is deprecated [-Wdeprecated-copy] - 110 | target = source; - | ~~~~~~~^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:429:9: note: because 'seqan::Index > > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' - 429 | Index(Index const &other): - | ^~~~~ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSeqHValue = seqan::ConsensusScoreSequenceEntry >, seqan::Alloc<> > >; TSeqVValue = seqan::ConsensusScoreSequenceEntry, seqan::Alloc<> >, seqan::InfixSegment> >; TSeqVIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TScoringScheme = seqan::Score >, seqan::Score > > >; TDPCell = seqan::DPCell_ >; TColumnDescriptor = seqan::MetaColumnDescriptor, seqan::Tag >; TDPProfile = seqan::DPProfile_ >, seqan::Tag, seqan::TracebackOn, seqan::Tag > >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSeqHValue = seqan::ConsensusScoreSequenceEntry >, seqan::Alloc<> > >; TSeqVValue = seqan::ConsensusScoreSequenceEntry, seqan::Alloc<> >, seqan::InfixSegment> >; TSeqVIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TScoringScheme = seqan::Score >, seqan::Score > > >; TColumnDescriptor = seqan::MetaColumnDescriptor, seqan::Tag >; TDPProfile = seqan::DPProfile_ >, seqan::Tag, seqan::TracebackOn, seqan::Tag > >, seqan::Tag >]' @@ -102135,11 +102206,8 @@ [ 77%] Linking CXX executable ../bin/demo_dox_index_open_save cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_open_save.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_open_save.dir/dox/index/open_save.cpp.o -o ../bin/demo_dox_index_open_save -lrt -lz -lbz2 -[ 77%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment1_solution -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/tutorial/pattern_matching/assignment1_solution.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target demo_tutorial_pattern_matching_assignment1_solution +[ 77%] Built target demo_dox_index_open_save make -f demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/DependInfo.cmake --color= @@ -102151,8 +102219,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/tutorial/vcf_io/example1.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_vcf_io_example1.dir/tutorial/vcf_io/example1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/vcf_io/example1.cpp +[ 77%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment1_solution +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/tutorial/pattern_matching/assignment1_solution.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target demo_dox_index_open_save +[ 77%] Built target demo_tutorial_pattern_matching_assignment1_solution make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/DependInfo.cmake --color= @@ -102164,9 +102235,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/tutorial/file_io_overview/solution3.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/tutorial/file_io_overview/solution3.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/file_io_overview/solution3.cpp -[ 77%] Linking CXX executable ../bin/demo_dox_index_getOccurrences_getFrequency_range_getFibre -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.o -o ../bin/demo_dox_index_getOccurrences_getFrequency_range_getFibre -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: @@ -102193,19 +102261,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target demo_dox_index_getOccurrences_getFrequency_range_getFibre -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/depend.internal". -Scanning dependencies of target demo_tutorial_iterators_assignment_1_solution -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/tutorial/iterators/assignment_1_solution.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/tutorial/iterators/assignment_1_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_1_solution.cpp +[ 77%] Linking CXX executable ../bin/demo_dox_index_getOccurrences_getFrequency_range_getFibre +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/dox/index/getOccurrences_getFrequency_range_getFibre.cpp.o -o ../bin/demo_dox_index_getOccurrences_getFrequency_range_getFibre -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: @@ -102314,6 +102372,13 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 77%] Built target demo_dox_index_getOccurrences_getFrequency_range_getFibre +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: @@ -102341,6 +102406,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +Scanning dependencies of target demo_tutorial_iterators_assignment_1_solution +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 77%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/tutorial/iterators/assignment_1_solution.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/tutorial/iterators/assignment_1_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_1_solution.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/find_index_multiple.cpp:3: @@ -103033,6 +103104,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 78%] Linking CXX executable ../bin/demo_tutorial_file_io_overview_example1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_file_io_overview_example1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_file_io_overview_example1.dir/tutorial/file_io_overview/example1.cpp.o -o ../bin/demo_tutorial_file_io_overview_example1 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads.cpp:3: @@ -103052,14 +103126,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -[ 78%] Linking CXX executable ../bin/demo_tutorial_file_io_overview_example1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_file_io_overview_example1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_file_io_overview_example1.dir/tutorial/file_io_overview/example1.cpp.o -o ../bin/demo_tutorial_file_io_overview_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 78%] Built target demo_tutorial_file_io_overview_example1 make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/depend.internal". +Scanning dependencies of target demo_tutorial_fragment_store_access_aligned_reads2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 78%] Building CXX object demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/tutorial/fragment_store/access_aligned_reads2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/tutorial/fragment_store/access_aligned_reads2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -103090,14 +103169,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/depend.internal". -Scanning dependencies of target demo_tutorial_fragment_store_access_aligned_reads2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 78%] Building CXX object demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/tutorial/fragment_store/access_aligned_reads2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/tutorial/fragment_store/access_aligned_reads2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -103439,33 +103510,6 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' @@ -103498,9 +103542,8 @@ from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -103551,25 +103594,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -103601,6 +103625,34 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/access_aligned_reads2.cpp:3: @@ -103627,6 +103679,25 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/base.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -103727,9 +103798,6 @@ [ 79%] Linking CXX executable ../bin/demo_tutorial_fragment_store_base cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_fragment_store_base.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_fragment_store_base.dir/tutorial/fragment_store/base.cpp.o -o ../bin/demo_tutorial_fragment_store_base -lrt -lz -lbz2 -[ 79%] Linking CXX executable ../bin/demo_tutorial_file_io_overview_solution3 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/tutorial/file_io_overview/solution3.cpp.o -o ../bin/demo_tutorial_file_io_overview_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target demo_tutorial_fragment_store_base make -f demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/depend @@ -103743,6 +103811,9 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/iterators/sequence_iterator_demo.cpp +[ 79%] Linking CXX executable ../bin/demo_tutorial_file_io_overview_solution3 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/tutorial/file_io_overview/solution3.cpp.o -o ../bin/demo_tutorial_file_io_overview_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target demo_tutorial_file_io_overview_solution3 make -f demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/depend @@ -103788,36 +103859,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_dox_find_finder_index.dir/dox/find/finder_index.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_find_finder_index.dir/dox/find/finder_index.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp -[ 79%] Linking CXX executable ../bin/demo_tutorial_iterators_sequence_iterator_demo -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o -o ../bin/demo_tutorial_iterators_sequence_iterator_demo -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 79%] Built target demo_tutorial_iterators_sequence_iterator_demo -make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/depend.internal". -Scanning dependencies of target demo_tutorial_genome_annotations_assignment_1_hint -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp -[ 79%] Linking CXX executable ../bin/demo_tutorial_generic_programming_example_hashing -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/tutorial/generic_programming/example_hashing.cpp.o -o ../bin/demo_tutorial_generic_programming_example_hashing -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 79%] Built target demo_tutorial_generic_programming_example_hashing -make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/depend.internal". -Scanning dependencies of target demo_tutorial_index_iterators_iterator_solution2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:3: @@ -103837,8 +103878,7 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ -[ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp +[ 79%] Linking CXX executable ../bin/demo_tutorial_iterators_sequence_iterator_demo In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -103866,6 +103906,15 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o -o ../bin/demo_tutorial_iterators_sequence_iterator_demo -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 79%] Built target demo_tutorial_iterators_sequence_iterator_demo +make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/demos/tutorial/fragment_store/display_aligned_reads.cpp:3: @@ -103933,6 +103982,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +Scanning dependencies of target demo_tutorial_genome_annotations_assignment_1_hint +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -104018,6 +104073,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 79%] Linking CXX executable ../bin/demo_tutorial_generic_programming_example_hashing +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/tutorial/generic_programming/example_hashing.cpp.o -o ../bin/demo_tutorial_generic_programming_example_hashing -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 79%] Built target demo_tutorial_generic_programming_example_hashing +make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/depend.internal". +Scanning dependencies of target demo_tutorial_index_iterators_iterator_solution2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -104367,6 +104438,50 @@ [ 79%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_find_index_multiple cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/tutorial/pattern_matching/find_index_multiple.cpp.o -o ../bin/demo_tutorial_pattern_matching_find_index_multiple -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 79%] Built target demo_tutorial_pattern_matching_find_index_multiple +make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/depend.internal". +Scanning dependencies of target demo_tutorial_sequences_example_comparisons +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/tutorial/sequences/example_comparisons.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/tutorial/sequences/example_comparisons.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_comparisons.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::String >; TIndexSpec = void; TSpec = seqan::ParentLinks<>; TDfsOrder = seqan::Preorder_]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >; TSpec = seqan::ParentLinks<>]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:15:23: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1838:27: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] + 1838 | oldParentDesc = nodeUp(it); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' + 222 | VertexEsa(VertexEsa const &other): + | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:14:39: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:2: @@ -104396,63 +104511,125 @@ | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::String >; TIndexSpec = void; TSpec = seqan::ParentLinks<>; TDfsOrder = seqan::Preorder_]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1880:20: required from 'bool seqan::goDown(seqan::Iter > >&) [with TIndex = seqan::Index > >; TSpec = seqan::ParentLinks<>]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:15:23: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1838:27: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] - 1838 | oldParentDesc = nodeUp(it); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(seqan::Iter, seqan::VSTree >&) [with TText = seqan::String >; TIndexSpec = seqan::IndexEsa<>; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:10:62: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] + 1731 | it._parentDesc = value(it); + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 79%] Built target demo_tutorial_pattern_matching_find_index_multiple -make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/depend.internal". +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >; TSpec = seqan::TopDown<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(seqan::Iter, seqan::VSTree >&) [with TText = seqan::String >; TIndexSpec = seqan::IndexEsa<>; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:10:62: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' + 222 | VertexEsa(VertexEsa const &other): + | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:14:39: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:14:39: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -Scanning dependencies of target demo_tutorial_sequences_example_comparisons -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/tutorial/sequences/example_comparisons.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/tutorial/sequences/example_comparisons.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_comparisons.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1491:22: required from 'void seqan::goRoot(seqan::Iter, seqan::VSTree >&) [with TText = seqan::String >; TIndexSpec = seqan::IndexEsa<>; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:10:62: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1731:24: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] - 1731 | it._parentDesc = value(it); - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' - 222 | VertexEsa(VertexEsa const &other): - | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGff_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:11:39: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:2: @@ -104561,48 +104738,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > >; TSpec = seqan::TopDown<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > >; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1492:14: required from 'void seqan::goRoot(seqan::Iter, seqan::VSTree >&) [with TText = seqan::String >; TIndexSpec = seqan::IndexEsa<>; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:10:62: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' - 222 | VertexEsa(VertexEsa const &other): - | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:14:39: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:2: @@ -104630,30 +104765,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:14:39: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution2.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' /build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here @@ -104672,6 +104788,29 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGtf_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:11:39: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:2: @@ -104726,28 +104865,23 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGff_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:11:39: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:2: @@ -104775,29 +104909,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:2: @@ -104852,46 +104963,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGtf_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:11:39: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_hint.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/dox/find/finder_index.cpp:2: @@ -105018,27 +105089,27 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 79%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_base.dir/tutorial/iterators/base.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_base.dir/tutorial/iterators/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/iterators/base.cpp -[ 79%] Linking CXX executable ../bin/demo_tutorial_index_iterators_iterator_solution2 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o -o ../bin/demo_tutorial_index_iterators_iterator_solution2 -lrt -lz -lbz2 [ 79%] Linking CXX executable ../bin/demo_tutorial_fragment_store_access_aligned_reads cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/tutorial/fragment_store/access_aligned_reads.cpp.o -o ../bin/demo_tutorial_fragment_store_access_aligned_reads -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 79%] Built target demo_tutorial_index_iterators_iterator_solution2 +[ 79%] Built target demo_tutorial_fragment_store_access_aligned_reads make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/depend.internal". Scanning dependencies of target demo_tutorial_genome_annotations_assignment_3_solution +[ 79%] Linking CXX executable ../bin/demo_tutorial_index_iterators_iterator_solution2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/link.txt --verbose=1 make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/tutorial/index_iterators/iterator_solution2.cpp.o -o ../bin/demo_tutorial_index_iterators_iterator_solution2 -lrt -lz -lbz2 [ 80%] Building CXX object demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/tutorial/genome_annotations/assignment_3_solution.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/tutorial/genome_annotations/assignment_3_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 80%] Built target demo_tutorial_fragment_store_access_aligned_reads +[ 80%] Built target demo_tutorial_index_iterators_iterator_solution2 make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/DependInfo.cmake --color= @@ -105089,34 +105160,35 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGff_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:11:39: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGff_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:11:39: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -105134,11 +105206,11 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGff_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:10:39: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -105156,12 +105228,12 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGtf_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:11:39: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ @@ -105178,28 +105250,44 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGtf_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGff_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:11:39: required from here +/build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:10:39: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:2: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:3: + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': @@ -105247,23 +105335,6 @@ 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_3_solution.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_1_solution.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' @@ -105305,6 +105376,17 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 80%] Built target demo_tutorial_fragment_store_access_aligned_reads2 +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/depend.internal". +Scanning dependencies of target demo_tutorial_gff_and_gtf_io_solution2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_4_solution.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGff_]': @@ -105327,13 +105409,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 80%] Built target demo_tutorial_fragment_store_access_aligned_reads2 -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/depend.internal". +[ 80%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_4_solution.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': @@ -105357,12 +105434,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -Scanning dependencies of target demo_tutorial_gff_and_gtf_io_solution2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 80%] Building CXX object demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_4_solution.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGtf_]': @@ -105386,9 +105457,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 80%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_1_hint -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_1_hint -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/demos/tutorial/genome_annotations/assignment_4_solution.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': @@ -105406,6 +105474,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 80%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_1_hint +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/tutorial/genome_annotations/assignment_1_hint.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_1_hint -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 80%] Built target demo_tutorial_genome_annotations_assignment_1_hint make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/depend @@ -105422,19 +105493,6 @@ [ 81%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_sequence_count_characters cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/unassigned_or_unused/tutorial_sequence/count_characters.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_sequence_count_characters -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 81%] Built target demo_unassigned_or_unused_tutorial_sequence_count_characters -make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/depend.internal". -Scanning dependencies of target demo_dox_index_UNUSED_shape_hash_next -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 81%] Building CXX object demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/dox/index/UNUSED_shape_hash_next.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/dox/index/UNUSED_shape_hash_next.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/UNUSED_shape_hash_next.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:47, from /build/seqan2-2.4.0+dfsg/demos/tutorial/gff_and_gtf_io/solution2.cpp:1: @@ -105486,6 +105544,13 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 81%] Built target demo_unassigned_or_unused_tutorial_sequence_count_characters +make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:45, @@ -105507,6 +105572,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +Scanning dependencies of target demo_dox_index_UNUSED_shape_hash_next +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 81%] Building CXX object demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/dox/index/UNUSED_shape_hash_next.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/dox/index/UNUSED_shape_hash_next.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/UNUSED_shape_hash_next.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/dox/index/UNUSED_shape_hash_next.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': @@ -105532,41 +105603,41 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/graph/graph_hmm.cpp -[ 81%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_1_solution -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/tutorial/genome_annotations/assignment_1_solution.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_1_solution -lrt -lz -lbz2 [ 81%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_3_solution +[ 81%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_1_solution cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/link.txt --verbose=1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/tutorial/genome_annotations/assignment_3_solution.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_3_solution -lrt -lz -lbz2 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/tutorial/genome_annotations/assignment_1_solution.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 81%] Built target demo_tutorial_genome_annotations_assignment_1_solution -make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/depend.internal". -[ 81%] Linking CXX executable ../bin/demo_tutorial_consensus_alignment_without_positions -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/tutorial/consensus_alignment/without_positions.cpp.o -o ../bin/demo_tutorial_consensus_alignment_without_positions -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 81%] Built target demo_tutorial_genome_annotations_assignment_3_solution +make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/depend +[ 81%] Built target demo_tutorial_genome_annotations_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/DependInfo.cmake --color= -Scanning dependencies of target demo_tutorial_index_iterators_iterator_solution3 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/depend.internal". -[ 81%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/tutorial/index_iterators/iterator_solution3.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/tutorial/index_iterators/iterator_solution3.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/depend.internal". Scanning dependencies of target demo_tutorial_graph_solution_1 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 82%] Building CXX object demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/graph/solution_1.cpp +Scanning dependencies of target demo_tutorial_index_iterators_iterator_solution3 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 82%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/tutorial/index_iterators/iterator_solution3.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/tutorial/index_iterators/iterator_solution3.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp +[ 82%] Linking CXX executable ../bin/demo_tutorial_consensus_alignment_without_positions +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/tutorial/consensus_alignment/without_positions.cpp.o -o ../bin/demo_tutorial_consensus_alignment_without_positions -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 82%] Built target demo_tutorial_consensus_alignment_without_positions make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/depend @@ -105583,6 +105654,9 @@ [ 82%] Linking CXX executable ../bin/demo_tutorial_genome_annotations_assignment_4_solution cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/tutorial/genome_annotations/assignment_4_solution.cpp.o -o ../bin/demo_tutorial_genome_annotations_assignment_4_solution -lrt -lz -lbz2 +[ 82%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_solution2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 82%] Built target demo_tutorial_genome_annotations_assignment_4_solution make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/depend @@ -105590,15 +105664,6 @@ cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/depend.internal". -Scanning dependencies of target demo_dox_seeds_seeds_chaining -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 82%] Building CXX object demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_chaining.cpp -[ 82%] Linking CXX executable ../bin/demo_tutorial_gff_and_gtf_io_solution2 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/tutorial/gff_and_gtf_io/solution2.cpp.o -o ../bin/demo_tutorial_gff_and_gtf_io_solution2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 82%] Built target demo_tutorial_gff_and_gtf_io_solution2 make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/depend @@ -105606,6 +105671,12 @@ cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/depend.internal". +Scanning dependencies of target demo_dox_seeds_seeds_chaining +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 82%] Building CXX object demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_chaining.cpp Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build @@ -105628,15 +105699,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/tutorial/parsing_command_line_arguments/assignment4_solution.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/tutorial/parsing_command_line_arguments/assignment4_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment4_solution.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ [ 83%] Linking CXX executable ../bin/demo_tutorial_fragment_store_display_aligned_reads cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/tutorial/fragment_store/display_aligned_reads.cpp.o -o ../bin/demo_tutorial_fragment_store_display_aligned_reads -lrt -lz -lbz2 @@ -105653,6 +105715,15 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/tutorial/index_iterators/index_assignment1.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/tutorial/index_iterators/index_assignment1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_solution3.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_goDown(seqan::Iter >, seqan::VSTree > >&, seqan::VSTreeIteratorTraits) [with TText = seqan::String >; TIndexSpec = void; TSpec = seqan::ParentLinks<>; TDfsOrder = seqan::Preorder_]': @@ -105667,6 +105738,69 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:183, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h: In instantiation of 'int seqan::_globalAlignment(seqan::Gaps&, seqan::Gaps&, const MyersHirschberg&) [with TSequenceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; seqan::MyersHirschberg = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:95:28: required from 'int seqan::globalAlignment(seqan::Align&, const MyersHirschberg&) [with TSequence = seqan::String, seqan::Alloc<> >; TAlignSpec = seqan::Tag; seqan::MyersHirschberg = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:26:57: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:348:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 348 | finger1 = col_; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:183, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:368:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 368 | finger2 = col_; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:183, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:370:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 370 | finger1 = col_; + | ~~~~~~~~^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:183, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:398:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 398 | finger1 = begin(matrix_); + | ~~~~~~~~^~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' + 105 | Iter(Iter const & other_) : + | ^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:183, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:423:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] + 423 | it_ = finger1; + | ~~~~^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' + 105 | Iter(Iter const & other_) : + | ^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -105767,69 +105901,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:183, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h: In instantiation of 'int seqan::_globalAlignment(seqan::Gaps&, seqan::Gaps&, const MyersHirschberg&) [with TSequenceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; seqan::MyersHirschberg = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_specialized.h:95:28: required from 'int seqan::globalAlignment(seqan::Align&, const MyersHirschberg&) [with TSequence = seqan::String, seqan::Alloc<> >; TAlignSpec = seqan::Tag; seqan::MyersHirschberg = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:26:57: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:348:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 348 | finger1 = col_; - | ~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' - 105 | Iter(Iter const & other_) : - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:183, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:368:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 368 | finger2 = col_; - | ~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' - 105 | Iter(Iter const & other_) : - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:183, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:370:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 370 | finger1 = col_; - | ~~~~~~~~^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' - 105 | Iter(Iter const & other_) : - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:183, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:398:21: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 398 | finger1 = begin(matrix_); - | ~~~~~~~~^~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' - 105 | Iter(Iter const & other_) : - | ^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:183, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/align/global_alignment_myers_hirschberg_impl.h:423:25: warning: implicitly-declared 'constexpr seqan::Iter, seqan::CountingIteratorImpl_ > >& seqan::Iter, seqan::CountingIteratorImpl_ > >::operator=(const seqan::Iter, seqan::CountingIteratorImpl_ > >&)' is deprecated [-Wdeprecated-copy] - 423 | it_ = finger1; - | ~~~~^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:55, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_position.h:105:5: note: because 'seqan::Iter, seqan::CountingIteratorImpl_ > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TContainer = seqan::Matrix]' - 105 | Iter(Iter const & other_) : - | ^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, from /build/seqan2-2.4.0+dfsg/demos/dox/seeds/seeds_chaining.cpp:2: @@ -105843,51 +105914,35 @@ [ 83%] Linking CXX executable ../bin/demo_tutorial_graph_solution_1 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_solution_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o -o ../bin/demo_tutorial_graph_solution_1 -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 83%] Linking CXX executable ../bin/demo_tutorial_graph_graph_hmm cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_graph_hmm.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o -o ../bin/demo_tutorial_graph_graph_hmm -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 83%] Built target demo_tutorial_graph_solution_1 make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/DependInfo.cmake --color= +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o -o ../bin/demo_tutorial_graph_graph_hmm -lrt -lz -lbz2 Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/depend.internal". +Scanning dependencies of target demo_tutorial_index_iterators_index_assignment2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/tutorial/index_iterators/index_assignment2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/tutorial/index_iterators/index_assignment2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 83%] Built target demo_tutorial_graph_graph_hmm make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/DependInfo.cmake --color= -Scanning dependencies of target demo_tutorial_index_iterators_index_assignment2 Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/depend.internal". -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/tutorial/index_iterators/index_assignment2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/tutorial/index_iterators/index_assignment2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp Scanning dependencies of target demo_tutorial_index_iterators_index_bidirectional_search make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/tutorial/index_iterators/index_bidirectional_search.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/tutorial/index_iterators/index_bidirectional_search.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp -[ 83%] Linking CXX executable ../bin/demo_dox_seeds_seeds_chaining -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_seeds_seeds_chaining.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o -o ../bin/demo_dox_seeds_seeds_chaining -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target demo_dox_seeds_seeds_chaining -make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/depend.internal". -Scanning dependencies of target demo_tutorial_consensus_alignment_with_positions -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': @@ -105929,6 +105984,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +[ 83%] Linking CXX executable ../bin/demo_dox_seeds_seeds_chaining +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_seeds_seeds_chaining.dir/link.txt --verbose=1 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]': @@ -105959,6 +106016,7 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_seeds_seeds_chaining.dir/dox/seeds/seeds_chaining.cpp.o -o ../bin/demo_dox_seeds_seeds_chaining -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > > >; TSpec = seqan::BottomUp<>]': @@ -106016,9 +106074,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -[ 83%] Linking CXX executable ../bin/demo_tutorial_alignment_scoring_scheme_simple -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/tutorial/alignment/scoring_scheme_simple.cpp.o -o ../bin/demo_tutorial_alignment_scoring_scheme_simple -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:3: @@ -106040,7 +106095,23 @@ 143 | operator = (Segment const & source) | ^~~~~~~~ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target demo_tutorial_alignment_scoring_scheme_simple +[ 83%] Built target demo_dox_seeds_seeds_chaining +make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/depend.internal". +Scanning dependencies of target demo_tutorial_consensus_alignment_with_positions +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp +[ 83%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 83%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/DependInfo.cmake --color= @@ -106052,11 +106123,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/tutorial/index_iterators/index_search2.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/tutorial/index_iterators/index_search2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search2.cpp -[ 83%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/tutorial/pairwise_sequence_alignment/alignment_global_assignment3.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 -lrt -lz -lbz2 +[ 83%] Linking CXX executable ../bin/demo_tutorial_alignment_scoring_scheme_simple +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/tutorial/alignment/scoring_scheme_simple.cpp.o -o ../bin/demo_tutorial_alignment_scoring_scheme_simple -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 +[ 83%] Built target demo_tutorial_alignment_scoring_scheme_simple make -f demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build.make demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/DependInfo.cmake --color= @@ -106084,15 +106155,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/tutorial/modifiers/modreverse.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_modifiers_modreverse.dir/tutorial/modifiers/modreverse.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/modreverse.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:3: @@ -106119,15 +106181,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:3: @@ -106506,42 +106559,15 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:22:47: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:21:40: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 125 | data_iterator(other_.data_iterator) - | ^ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:3: @@ -106569,48 +106595,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > > >; TSpec = seqan::BottomUp<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > > >; TSpec = seqan::BottomUp<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1605:14: required from 'void seqan::goBegin(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >; TIndexSpec = void; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:453:20: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' - 222 | VertexEsa(VertexEsa const &other): - | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:22:47: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:3: @@ -106644,32 +106628,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:203:24: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 203 | *I = *refPrev; | ~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:21:40: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 351 | return TIterator(me, begin(me, Standard())); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -106692,26 +106650,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:22:47: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:3: @@ -106766,90 +106704,94 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::HistoryStackFM_ >; TTargetSpec = seqan::Alloc<>; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::String >, seqan::Alloc<> >&; TSource = seqan::HistoryStackFM_ >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:494:16: required from 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > > >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bifm_stree.h:92:17: required from 'bool seqan::_goDownString(seqan::Iter > >, seqan::VSTree > >&, const TString&, TSize&, TDirection) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig; TSpec = seqan::ParentLinks<>; TString = seqan::String, seqan::Alloc<> >; TSize = long unsigned int; TDirection = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:271:25: required from 'bool seqan::_goDownObject(seqan::Iter >, seqan::VSTree > >&, const TObject&, seqan::True, TDirection) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::ParentLinks<>; TObject = seqan::String, seqan::Alloc<> >; TDirection = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:300:25: required from 'bool seqan::goDown(seqan::Iter >, seqan::VSTree > >&, const TObject&, const Fwd&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::ParentLinks<>; TObject = seqan::String, seqan::Alloc<> >; seqan::Fwd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:17:38: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::HistoryStackFM_ >::HistoryStackFM_(const seqan::HistoryStackFM_ >&)' is deprecated [-Wdeprecated-copy] - 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value - | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:172, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:70:5: note: because 'seqan::HistoryStackFM_ >' has user-provided 'const seqan::HistoryStackFM_& seqan::HistoryStackFM_::operator=(const seqan::HistoryStackFM_&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 70 | operator=(HistoryStackFM_ const & _origin) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:21:40: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:22:47: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index > > >; TSpec = seqan::BottomUp<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index > > >; TSpec = seqan::BottomUp<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:1605:14: required from 'void seqan::goBegin(seqan::Iter >, seqan::VSTree > >&) [with TText = seqan::StringSet > >; TIndexSpec = void; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:453:20: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:137, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' + 222 | VertexEsa(VertexEsa const &other): + | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::HistoryStackFM_ >*; TParam = seqan::HistoryStackFM_ >]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::HistoryStackFM_ >*; TParam = seqan::HistoryStackFM_ >]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::HistoryStackFM_ >; TTargetSpec = seqan::Alloc<>; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::String >, seqan::Alloc<> >&; TSource = seqan::HistoryStackFM_ >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:494:16: required from 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > > >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bifm_stree.h:92:17: required from 'bool seqan::_goDownString(seqan::Iter > >, seqan::VSTree > >&, const TString&, TSize&, TDirection) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig; TSpec = seqan::ParentLinks<>; TString = seqan::String, seqan::Alloc<> >; TSize = long unsigned int; TDirection = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:271:25: required from 'bool seqan::_goDownObject(seqan::Iter >, seqan::VSTree > >&, const TObject&, seqan::True, TDirection) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::ParentLinks<>; TObject = seqan::String, seqan::Alloc<> >; TDirection = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:300:25: required from 'bool seqan::goDown(seqan::Iter >, seqan::VSTree > >&, const TObject&, const Fwd&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::ParentLinks<>; TObject = seqan::String, seqan::Alloc<> >; seqan::Fwd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:17:38: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::HistoryStackFM_ >::HistoryStackFM_(const seqan::HistoryStackFM_ >&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:172, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:70:5: note: because 'seqan::HistoryStackFM_ >' has user-provided 'const seqan::HistoryStackFM_& seqan::HistoryStackFM_::operator=(const seqan::HistoryStackFM_&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 70 | operator=(HistoryStackFM_ const & _origin) + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:22:47: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::HistoryStackFM_ >*; TParam = seqan::HistoryStackFM_ >&]': -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::HistoryStackFM_ >*; TParam = seqan::HistoryStackFM_ >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::HistoryStackFM_ >; TTargetSpec = seqan::Alloc<>; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::TagGenerous_]' -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::String >, seqan::Alloc<> >&; TSource = seqan::HistoryStackFM_ >&]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:494:16: required from 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > > >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bifm_stree.h:92:17: required from 'bool seqan::_goDownString(seqan::Iter > >, seqan::VSTree > >&, const TString&, TSize&, TDirection) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig; TSpec = seqan::ParentLinks<>; TString = seqan::String, seqan::Alloc<> >; TSize = long unsigned int; TDirection = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:271:25: required from 'bool seqan::_goDownObject(seqan::Iter >, seqan::VSTree > >&, const TObject&, seqan::True, TDirection) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::ParentLinks<>; TObject = seqan::String, seqan::Alloc<> >; TDirection = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:300:25: required from 'bool seqan::goDown(seqan::Iter >, seqan::VSTree > >&, const TObject&, const Fwd&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::ParentLinks<>; TObject = seqan::String, seqan::Alloc<> >; seqan::Fwd = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:17:38: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::HistoryStackFM_ >::HistoryStackFM_(const seqan::HistoryStackFM_ >&)' is deprecated [-Wdeprecated-copy] - 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:172, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:70:5: note: because 'seqan::HistoryStackFM_ >' has user-provided 'const seqan::HistoryStackFM_& seqan::HistoryStackFM_::operator=(const seqan::HistoryStackFM_&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 70 | operator=(HistoryStackFM_ const & _origin) + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter >, seqan::InfixSegment>, seqan::AdaptorIterator > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:22:47: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' + 143 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, @@ -106906,6 +106848,24 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:63: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:21:40: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:125:49: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 125 | data_iterator(other_.data_iterator) + | ^ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment1.cpp:3: @@ -106961,6 +106921,117 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:21:40: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 351 | return TIterator(me, begin(me, Standard())); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::HistoryStackFM_ >; TTargetSpec = seqan::Alloc<>; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::String >, seqan::Alloc<> >&; TSource = seqan::HistoryStackFM_ >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:494:16: required from 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > > >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bifm_stree.h:92:17: required from 'bool seqan::_goDownString(seqan::Iter > >, seqan::VSTree > >&, const TString&, TSize&, TDirection) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig; TSpec = seqan::ParentLinks<>; TString = seqan::String, seqan::Alloc<> >; TSize = long unsigned int; TDirection = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:271:25: required from 'bool seqan::_goDownObject(seqan::Iter >, seqan::VSTree > >&, const TObject&, seqan::True, TDirection) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::ParentLinks<>; TObject = seqan::String, seqan::Alloc<> >; TDirection = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:300:25: required from 'bool seqan::goDown(seqan::Iter >, seqan::VSTree > >&, const TObject&, const Fwd&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::ParentLinks<>; TObject = seqan::String, seqan::Alloc<> >; seqan::Fwd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:17:38: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1342:26: warning: implicitly-declared 'constexpr seqan::HistoryStackFM_ >::HistoryStackFM_(const seqan::HistoryStackFM_ >&)' is deprecated [-Wdeprecated-copy] + 1342 | TTargetValue temp_copy(std::forward(_value)); //temp copy because resize could invalidate _value + | ^~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:172, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:70:5: note: because 'seqan::HistoryStackFM_ >' has user-provided 'const seqan::HistoryStackFM_& seqan::HistoryStackFM_::operator=(const seqan::HistoryStackFM_&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 70 | operator=(HistoryStackFM_ const & _origin) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:117:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:351:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Iterator >::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; seqan::Rooted = const seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:392:25: required from 'typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type seqan::begin(const T&, seqan::Tag) [with T = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Rooted_; typename seqan::DisableIf::Type> >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/iter_stream.h:515:17: required from 'typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type seqan::directionIterator(TContainer&, const TDirection&) [with TContainer = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TDirection = seqan::Tag; typename seqan::DisableIf >, typename seqan::Iterator >::Type>::Type = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_stream.h:1085:87: required from 'typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type seqan::write(TTarget&, const TContainer&) [with TTarget = seqan::Iter, seqan::StreamIterator > >; TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::EnableIf >, seqan::And >, seqan::Not::Type> > > > >, void>::Type = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:789:10: required from 'TStream& seqan::operator<<(TStream&, const seqan::Segment&) [with TStream = std::basic_ostream; THost = const seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:21:40: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::HistoryStackFM_ >*; TParam = seqan::HistoryStackFM_ >]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::HistoryStackFM_ >*; TParam = seqan::HistoryStackFM_ >]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1348:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::HistoryStackFM_ >; TTargetSpec = seqan::Alloc<>; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::String >, seqan::Alloc<> >&; TSource = seqan::HistoryStackFM_ >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:494:16: required from 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > > >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bifm_stree.h:92:17: required from 'bool seqan::_goDownString(seqan::Iter > >, seqan::VSTree > >&, const TString&, TSize&, TDirection) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig; TSpec = seqan::ParentLinks<>; TString = seqan::String, seqan::Alloc<> >; TSize = long unsigned int; TDirection = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:271:25: required from 'bool seqan::_goDownObject(seqan::Iter >, seqan::VSTree > >&, const TObject&, seqan::True, TDirection) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::ParentLinks<>; TObject = seqan::String, seqan::Alloc<> >; TDirection = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:300:25: required from 'bool seqan::goDown(seqan::Iter >, seqan::VSTree > >&, const TObject&, const Fwd&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::ParentLinks<>; TObject = seqan::String, seqan::Alloc<> >; seqan::Fwd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:17:38: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::HistoryStackFM_ >::HistoryStackFM_(const seqan::HistoryStackFM_ >&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:172, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:70:5: note: because 'seqan::HistoryStackFM_ >' has user-provided 'const seqan::HistoryStackFM_& seqan::HistoryStackFM_::operator=(const seqan::HistoryStackFM_&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 70 | operator=(HistoryStackFM_ const & _origin) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, TParam&&) [with TIterator = seqan::HistoryStackFM_ >*; TParam = seqan::HistoryStackFM_ >&]': +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:305:28: required from 'void seqan::valueConstruct(TIterator, TParam&&) [with TIterator = seqan::HistoryStackFM_ >*; TParam = seqan::HistoryStackFM_ >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1354:27: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >, seqan::Alloc<> >; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h:1366:54: required from 'void seqan::appendValue(seqan::String&, TValue&&, seqan::Tag) [with TTargetValue = seqan::HistoryStackFM_ >; TTargetSpec = seqan::Alloc<>; TValue = seqan::HistoryStackFM_ >&; TExpand = seqan::TagGenerous_]' +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/sequence_interface.h:937:16: required from 'void seqan::appendValue(TContainer&&, TSource&&) [with TContainer = seqan::String >, seqan::Alloc<> >&; TSource = seqan::HistoryStackFM_ >&]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:494:16: required from 'void seqan::_historyPush(seqan::Iter >, seqan::VSTree > > >&) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bifm_stree.h:92:17: required from 'bool seqan::_goDownString(seqan::Iter > >, seqan::VSTree > >&, const TString&, TSize&, TDirection) [with TText = seqan::String, seqan::Alloc<> >; TOccSpec = void; TIndexSpec = seqan::FastFMIndexConfig; TSpec = seqan::ParentLinks<>; TString = seqan::String, seqan::Alloc<> >; TSize = long unsigned int; TDirection = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:271:25: required from 'bool seqan::_goDownObject(seqan::Iter >, seqan::VSTree > >&, const TObject&, seqan::True, TDirection) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::ParentLinks<>; TObject = seqan::String, seqan::Alloc<> >; TDirection = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_bidirectional_stree.h:300:25: required from 'bool seqan::goDown(seqan::Iter >, seqan::VSTree > >&, const TObject&, const Fwd&) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::FMIndex >; TSpec = seqan::ParentLinks<>; TObject = seqan::String, seqan::Alloc<> >; seqan::Fwd = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:17:38: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/array_construct_destruct.h:254:9: warning: implicitly-declared 'constexpr seqan::HistoryStackFM_ >::HistoryStackFM_(const seqan::HistoryStackFM_ >&)' is deprecated [-Wdeprecated-copy] + 254 | new( (void*) & value(it) ) TNonConstValue(std::forward(param_)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:172, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_fm_stree.h:70:5: note: because 'seqan::HistoryStackFM_ >' has user-provided 'const seqan::HistoryStackFM_& seqan::HistoryStackFM_::operator=(const seqan::HistoryStackFM_&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 70 | operator=(HistoryStackFM_ const & _origin) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: @@ -107204,15 +107275,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search2.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: @@ -107267,6 +107329,15 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search2.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: @@ -107322,9 +107393,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -[ 83%] Linking CXX executable ../bin/demo_tutorial_modifiers_modreverse -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_modreverse.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_modreverse.dir/tutorial/modifiers/modreverse.cpp.o -o ../bin/demo_tutorial_modifiers_modreverse -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_bidirectional_search.cpp:2: @@ -107380,19 +107448,33 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target demo_tutorial_modifiers_modreverse -make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/depend.internal". -Scanning dependencies of target demo_dox_graph_algorithms_bellman_ford_algorithm -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/dox/graph_algorithms/bellman_ford_algorithm.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/dox/graph_algorithms/bellman_ford_algorithm.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/bellman_ford_algorithm.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_search2.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]': @@ -107453,33 +107535,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:173:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:198:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:658:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:461:21: required from 'void seqan::_indexRequireBottomUpIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:452:43: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Postorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_algs_multi.h:109:41: required from 'seqan::Iter > >::Iter(TSTree&) [with TSTree = seqan::Index > > >]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:18:54: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:41, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: @@ -107588,6 +107643,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +[ 83%] Linking CXX executable ../bin/demo_tutorial_modifiers_modreverse +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_modreverse.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_modreverse.dir/tutorial/modifiers/modreverse.cpp.o -o ../bin/demo_tutorial_modifiers_modreverse -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: @@ -107615,6 +107673,7 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: @@ -107669,6 +107728,18 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +[ 83%] Built target demo_tutorial_modifiers_modreverse +make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/depend.internal". +Scanning dependencies of target demo_dox_graph_algorithms_bellman_ford_algorithm +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 83%] Building CXX object demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/dox/graph_algorithms/bellman_ford_algorithm.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/dox/graph_algorithms/bellman_ford_algorithm.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/graph_algorithms/bellman_ford_algorithm.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: @@ -107885,17 +107956,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:5: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: @@ -108005,6 +108065,17 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 82 | inline Triple(Triple const &_p) | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:5: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/index_assignment2.cpp:3: @@ -108372,19 +108443,6 @@ [ 83%] Linking CXX executable ../bin/demo_dox_graph_algorithms_bellman_ford_algorithm cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/dox/graph_algorithms/bellman_ford_algorithm.cpp.o -o ../bin/demo_dox_graph_algorithms_bellman_ford_algorithm -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target demo_dox_graph_algorithms_bellman_ford_algorithm -make -f demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/depend.internal". -Scanning dependencies of target demo_tutorial_indices_assignment_2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/tutorial/indices/assignment_2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indices_assignment_2.dir/tutorial/indices/assignment_2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, @@ -108406,6 +108464,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 83%] Built target demo_dox_graph_algorithms_bellman_ford_algorithm +make -f demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:55, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, @@ -108428,6 +108491,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/depend.internal". +Scanning dependencies of target demo_tutorial_indices_assignment_2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, from /build/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:4: @@ -108448,6 +108517,8 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ +[ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/tutorial/indices/assignment_2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_indices_assignment_2.dir/tutorial/indices/assignment_2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, @@ -108955,6 +109026,15 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_assignment2.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, @@ -109198,44 +109278,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_assignment2.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSeqHValue = seqan::ConsensusScoreSequenceEntry >, seqan::Alloc<> > >; TSeqVValue = seqan::ConsensusScoreSequenceEntry, seqan::Alloc<> >, seqan::InfixSegment> >; TSeqVIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TScoringScheme = seqan::Score >, seqan::Score > > >; TDPCell = seqan::DPCell_ >; TColumnDescriptor = seqan::MetaColumnDescriptor, seqan::Tag >; TDPProfile = seqan::DPProfile_ >, seqan::Tag, seqan::TracebackOn, seqan::Tag > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSeqHValue = seqan::ConsensusScoreSequenceEntry >, seqan::Alloc<> > >; TSeqVValue = seqan::ConsensusScoreSequenceEntry, seqan::Alloc<> >, seqan::InfixSegment> >; TSeqVIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TScoringScheme = seqan::Score >, seqan::Score > > >; TColumnDescriptor = seqan::MetaColumnDescriptor, seqan::Tag >; TDPProfile = seqan::DPProfile_ >, seqan::Tag, seqan::TracebackOn, seqan::Tag > >, seqan::Tag >]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::String >, seqan::Alloc<> >; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score >, seqan::Score > > >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::String >, seqan::Alloc<> >; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score >, seqan::Score > > >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::String >, seqan::Alloc<> >; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::WeightedConsensusScore >, seqan::Score > >; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' -/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = seqan::Gaps >, seqan::Alloc<> >, seqan::Tag >; TReadGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TConsensusScore = seqan::Score >, seqan::Score > > >; TAlignConfig = seqan::AlignConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(seqan::FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = seqan::FragmentStoreConfig]' -/build/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(seqan::FragmentStore&, const seqan::ConsensusAlignmentOptions&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:38: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] - 647 | return Iter >(container(left), hostIterator(left) - right); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' - 143 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, - from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' - 116 | Iter(typename Parameter_::Type container_, TIterator it_) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/demos/tutorial/index_iterators/iterator_assignment2.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(seqan::Iter > >&) [with TIndex = seqan::Index > >; TSpec = seqan::Preorder]': @@ -109267,6 +109309,35 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_base.h:222:9: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 222 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const seqan::Iter >&, int) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:382:27: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, TDPCell&, TDPCell&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSeqHValue = seqan::ConsensusScoreSequenceEntry >, seqan::Alloc<> > >; TSeqVValue = seqan::ConsensusScoreSequenceEntry, seqan::Alloc<> >, seqan::InfixSegment> >; TSeqVIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TScoringScheme = seqan::Score >, seqan::Score > > >; TDPCell = seqan::DPCell_ >; TColumnDescriptor = seqan::MetaColumnDescriptor, seqan::Tag >; TDPProfile = seqan::DPProfile_ >, seqan::Tag, seqan::TracebackOn, seqan::Tag > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:453:18: required from 'void seqan::_computeTrack(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSeqHValue&, const TSeqVValue&, const TSeqVIterator&, const TSeqVIterator&, const TScoringScheme&, const TColumnDescriptor&, const TDPProfile&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSeqHValue = seqan::ConsensusScoreSequenceEntry >, seqan::Alloc<> > >; TSeqVValue = seqan::ConsensusScoreSequenceEntry, seqan::Alloc<> >, seqan::InfixSegment> >; TSeqVIterator = seqan::Iter, seqan::Alloc<> >, seqan::InfixSegment>, seqan::AdaptorIterator*, seqan::Tag > >; TScoringScheme = seqan::Score >, seqan::Score > > >; TColumnDescriptor = seqan::MetaColumnDescriptor, seqan::Tag >; TDPProfile = seqan::DPProfile_ >, seqan::Tag, seqan::TracebackOn, seqan::Tag > >, seqan::Tag >]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:515:18: required from 'void seqan::_computeAlignmentImpl(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const seqan::DPProfile_&, const NavigateColumnWise&) [with TDPScout = seqan::DPScout_ >, seqan::If > >, seqan::Terminator_<>, seqan::Tag > >; TDPScoreMatrixNavigator = seqan::DPMatrixNavigator_ >, seqan::Tag, seqan::String >, seqan::Alloc<> > >, seqan::Tag, seqan::Tag >; TDPTraceMatrixNavigator = seqan::DPMatrixNavigator_, seqan::String >, seqan::DPTraceMatrix, seqan::Tag > > >, seqan::Tag >; TSequenceH = seqan::String >, seqan::Alloc<> >; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoringScheme = seqan::Score >, seqan::Score > > >; TBand = seqan::DPBandConfig >; TAlignmentAlgo = seqan::GlobalAlignment_ >; TGapCosts = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; seqan::NavigateColumnWise = seqan::Tag]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_algorithm_impl.h:1417:26: required from 'typename seqan::Value::Type seqan::_computeAlignment(seqan::DPContext&, TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const seqan::DPBandConfig&, const seqan::DPProfile_&) [with TDPScoreValue = seqan::DPCell_ >; TTraceValue = unsigned char; TScoreMatHost = seqan::String >, seqan::Alloc<> >; TTraceMatHost = seqan::String; TTraceTarget = seqan::String, seqan::Alloc<> >; TScoutState = seqan::DPScoutState_ >; TSequenceH = seqan::String >, seqan::Alloc<> >; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreScheme = seqan::Score >, seqan::Score > > >; TBandSwitch = seqan::Tag; TAlignmentAlgorithm = seqan::GlobalAlignment_ >; TGapScheme = seqan::Tag; TTraceFlag = seqan::TracebackOn, seqan::Tag > >; TExecPolicy = seqan::Tag; typename seqan::Value::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:287:29: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(seqan::DPContext, TTraceValue, TScoreMat, TTraceMat>&, seqan::String&, seqan::DPScoutState_&, const TSequenceH&, const TSequenceV&, const seqan::Score&, const seqan::AlignConfig2&) [with TScoreValue = int; TGapSpec = seqan::Tag; TTraceValue = unsigned char; TScoreMat = seqan::String >, seqan::Alloc<> >; TTraceMat = seqan::String; TTraceSegment = seqan::TraceSegment_; TSpec = seqan::Alloc<>; TDPScoutStateSpec = seqan::Tag; TSequenceH = seqan::String >, seqan::Alloc<> >; TSequenceV = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TScoreValue2 = int; TScoreSpec = seqan::WeightedConsensusScore >, seqan::Score > >; TDPType = seqan::GlobalAlignment_<>; TBand = seqan::DPBandConfig >; TFreeEndGaps = seqan::FreeEndGaps_; TTraceConfig = seqan::TracebackOn, seqan::Tag > >; typename seqan::Value >::Type = int]' +/build/seqan2-2.4.0+dfsg/include/seqan/align/dp_setup.h:308:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:657:36: required from 'void seqan::_readToProfileAlignment(TProfileGaps&, TReadGaps&, const TConsensusScore&, const TAlignConfig&, int&, int&, bool) [with TProfileGaps = seqan::Gaps >, seqan::Alloc<> >, seqan::Tag >; TReadGaps = seqan::Gaps, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TConsensusScore = seqan::Score >, seqan::Score > > >; TAlignConfig = seqan::AlignConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1209:36: required from 'void seqan::AnsonMyersRealignmentRound_::run(unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:685:18: required from 'void seqan::AnsonMyersRealigner_::run(unsigned int, unsigned int, unsigned int&) [with TFragmentStore = seqan::FragmentStore<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/realign/realign_base.h:1801:18: required from 'void seqan::reAlignment(seqan::FragmentStore&, unsigned int, unsigned int, unsigned int, bool, unsigned int, unsigned int, bool, bool) [with TSpec = void; TConfig = seqan::FragmentStoreConfig]' +/build/seqan2-2.4.0+dfsg/include/seqan/consensus/consensus_aligner_interface.h:145:24: required from 'void seqan::consensusAlignment(seqan::FragmentStore&, const seqan::ConsensusAlignmentOptions&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:51:38: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:647:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] + 647 | return Iter >(container(left), hostIterator(left) - right); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:96, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:37, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' + 143 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, + from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:36, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/consensus_alignment/with_positions.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' + 116 | Iter(typename Parameter_::Type container_, TIterator it_) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/tutorial/indices/assignment_2.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': @@ -109354,14 +109425,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/tutorial/iterators/assignment_2_solution.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/tutorial/iterators/assignment_2_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/iterators/assignment_2_solution.cpp -[ 83%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_1.dir/tutorial/iterators/assignment_1.cpp.o -o ../bin/demo_tutorial_iterators_assignment_1 -lrt -lz -lbz2 [ 83%] Linking CXX executable ../bin/demo_tutorial_indices_fm_index cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_indices_fm_index.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_indices_fm_index.dir/tutorial/indices/fm_index.cpp.o -o ../bin/demo_tutorial_indices_fm_index -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target demo_tutorial_iterators_assignment_1 +[ 83%] Built target demo_tutorial_indices_fm_index make -f demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/DependInfo.cmake --color= @@ -109373,8 +109441,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/tutorial/journaled_set/base.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_base.dir/tutorial/journaled_set/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/base.cpp +[ 83%] Linking CXX executable ../bin/demo_tutorial_iterators_assignment_1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_assignment_1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_iterators_assignment_1.dir/tutorial/iterators/assignment_1.cpp.o -o ../bin/demo_tutorial_iterators_assignment_1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target demo_tutorial_indices_fm_index +[ 83%] Built target demo_tutorial_iterators_assignment_1 make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/DependInfo.cmake --color= @@ -109723,22 +109794,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 83%] Linking CXX executable ../bin/demo_dox_arg_parse_argument_parser -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_arg_parse_argument_parser.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_arg_parse_argument_parser.dir/dox/arg_parse/argument_parser.cpp.o -o ../bin/demo_dox_arg_parse_argument_parser -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target demo_dox_arg_parse_argument_parser -make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/depend.internal". -Scanning dependencies of target demo_tutorial_q_gram_index_index_assignment5 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment5.cpp +[ 83%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_assignment1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/tutorial/index_iterators/index_assignment1.cpp.o -o ../bin/demo_tutorial_index_iterators_index_assignment1 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:44, @@ -109785,6 +109843,16 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 83%] Linking CXX executable ../bin/demo_dox_arg_parse_argument_parser +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_arg_parse_argument_parser.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_arg_parse_argument_parser.dir/dox/arg_parse/argument_parser.cpp.o -o ../bin/demo_dox_arg_parse_argument_parser -lrt -lz -lbz2 +[ 83%] Built target demo_tutorial_index_iterators_index_assignment1 +make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:3: @@ -109812,6 +109880,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +Scanning dependencies of target demo_tutorial_q_gram_index_index_assignment5 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_assignment5.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:3: @@ -109840,9 +109914,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 83%] Linking CXX executable ../bin/demo_tutorial_index_iterators_index_assignment1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/tutorial/index_iterators/index_assignment1.cpp.o -o ../bin/demo_tutorial_index_iterators_index_assignment1 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:3: @@ -109871,6 +109942,7 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -109900,6 +109972,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>; TIterator = seqan::Iter, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::JournaledStringIterSpec > >; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Journaled, seqan::SortedArray, seqan::Alloc<> > >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +[ 83%] Built target demo_dox_arg_parse_argument_parser +make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -109923,6 +110001,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +Scanning dependencies of target demo_tutorial_journaled_set_solution_online_search_assignment1 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/tutorial/journaled_set/solution_online_search_assignment1.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/tutorial/journaled_set/solution_online_search_assignment1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:3: @@ -109951,16 +110035,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target demo_tutorial_index_iterators_index_assignment1 -make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/depend.internal". -Scanning dependencies of target demo_tutorial_journaled_set_solution_online_search_assignment1 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment4.cpp:3: @@ -109989,9 +110063,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Building CXX object demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/tutorial/journaled_set/solution_online_search_assignment1.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/tutorial/journaled_set/solution_online_search_assignment1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -110340,9 +110411,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 84%] Linking CXX executable ../bin/demo_tutorial_q_gram_index_index_assignment5 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o -o ../bin/demo_tutorial_q_gram_index_index_assignment5 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:3: @@ -110371,13 +110439,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 84%] Built target demo_tutorial_q_gram_index_index_assignment5 -make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_set/solution_online_search_assignment1.cpp:3: @@ -110406,12 +110467,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -Scanning dependencies of target demo_dox_align_gaps_example -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 84%] Building CXX object demos/CMakeFiles/demo_dox_align_gaps_example.dir/dox/align/gaps_example.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_gaps_example.dir/dox/align/gaps_example.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/align/gaps_example.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -110519,6 +110574,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 84%] Linking CXX executable ../bin/demo_tutorial_q_gram_index_index_assignment5 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/tutorial/q_gram_index/index_assignment5.cpp.o -o ../bin/demo_tutorial_q_gram_index_index_assignment5 -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 84%] Built target demo_tutorial_q_gram_index_index_assignment5 +make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/depend.internal". +Scanning dependencies of target demo_dox_align_gaps_example +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 84%] Building CXX object demos/CMakeFiles/demo_dox_align_gaps_example.dir/dox/align/gaps_example.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_align_gaps_example.dir/dox/align/gaps_example.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/align/gaps_example.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/index_supermaxrepeats.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': @@ -111206,11 +111277,14 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 84%] Building CXX object demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/tutorial/metafunctions/assignment1_solution.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/tutorial/metafunctions/assignment1_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/metafunctions/assignment1_solution.cpp -[ 84%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example_with_struct +[ 86%] Linking CXX executable ../bin/demo_tutorial_journaled_set_solution_online_search_assignment4 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/tutorial/journaled_set/solution_online_search_assignment4.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_assignment4 -lrt -lz -lbz2 +[ 86%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example_with_struct cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/tutorial/parsing_command_line_arguments/example_with_struct.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example_with_struct -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 84%] Built target demo_tutorial_parsing_command_line_arguments_example_with_struct +[ 86%] Built target demo_tutorial_journaled_set_solution_online_search_assignment4 make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/DependInfo.cmake --color= @@ -111220,11 +111294,21 @@ make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 84%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/tutorial/sequences/example_conversions_move.cpp.o +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/tutorial/sequences/example_conversions_move.cpp.o +[ 86%] Built target demo_tutorial_parsing_command_line_arguments_example_with_struct cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/tutorial/sequences/example_conversions_move.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_conversions_move.cpp -[ 86%] Linking CXX executable ../bin/demo_tutorial_journaled_set_solution_online_search_assignment4 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/tutorial/journaled_set/solution_online_search_assignment4.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_assignment4 -lrt -lz -lbz2 +make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/depend.internal". +Scanning dependencies of target demo_tutorial_metafunctions_base +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/metafunctions/base.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': @@ -111266,13 +111350,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 86%] Built target demo_tutorial_journaled_set_solution_online_search_assignment4 -make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:2: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': @@ -111298,12 +111375,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -Scanning dependencies of target demo_tutorial_metafunctions_base -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 86%] Building CXX object demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/metafunctions/base.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree.h:77, from /build/seqan2-2.4.0+dfsg/demos/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/journaled_string_tree/journaled_string_tree_traverser_node.h: In instantiation of 'TSize seqan::impl::expandNode(seqan::TraverserImpl >&, TTraversalNode*, TSize, TObserver&, const TProxySelector&) [with TJst = seqan::JournaledStringTree, seqan::Alloc<> > >; TSpec = void; TTraversalNode = seqan::JstTraversalNode, seqan::Alloc<> > > >; TSize = long unsigned int; TObserver = std::tuple, seqan::Alloc >, seqan::Myers > > >&>; TProxySelector = seqan::Tag]': @@ -111514,11 +111585,14 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_packed.h:163:14: note: because 'seqan::String >' has user-provided 'seqan::String >& seqan::String >::operator=(const seqan::String >&) [with TValue = bool; THostspec = seqan::Alloc<>]' 163 | String & operator =(String const & source) | ^~~~~~~~ +[ 86%] Linking CXX executable ../bin/demo_tutorial_metafunctions_base +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_metafunctions_base.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o -o ../bin/demo_tutorial_metafunctions_base -lrt -lz -lbz2 [ 86%] Linking CXX executable ../bin/demo_tutorial_metafunctions_assignment1_solution cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/tutorial/metafunctions/assignment1_solution.cpp.o -o ../bin/demo_tutorial_metafunctions_assignment1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 86%] Built target demo_tutorial_metafunctions_assignment1_solution +[ 86%] Built target demo_tutorial_metafunctions_base make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/DependInfo.cmake --color= @@ -111530,11 +111604,8 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 86%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorial_sequence/sequence_all_strings.cpp -[ 86%] Linking CXX executable ../bin/demo_tutorial_metafunctions_base -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_metafunctions_base.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_metafunctions_base.dir/tutorial/metafunctions/base.cpp.o -o ../bin/demo_tutorial_metafunctions_base -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 86%] Built target demo_tutorial_metafunctions_base +[ 86%] Built target demo_tutorial_metafunctions_assignment1_solution make -f demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/DependInfo.cmake --color= @@ -111644,6 +111715,16 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/assignment1.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/seeds/solution1.cpp:2: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ [ 88%] Linking CXX executable ../bin/demo_tutorial_sequences_example_conversions_move cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/tutorial/sequences/example_conversions_move.cpp.o -o ../bin/demo_tutorial_sequences_example_conversions_move -lrt -lz -lbz2 @@ -111660,16 +111741,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/assignment1_solution.cpp -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/seeds.h:50, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/seeds/solution1.cpp:2: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ [ 88%] Linking CXX executable ../bin/demo_tutorial_seeds_solution1 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seeds_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_seeds_solution1.dir/tutorial/seeds/solution1.cpp.o -o ../bin/demo_tutorial_seeds_solution1 -lrt -lz -lbz2 @@ -111730,46 +111801,49 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 88%] Linking CXX executable ../bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp.o -o ../bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 -lrt -lz -lbz2 [ 88%] Linking CXX executable ../bin/demo_tutorial_modifiers_assignment1 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o -o ../bin/demo_tutorial_modifiers_assignment1 -lrt -lz -lbz2 +[ 88%] Linking CXX executable ../bin/demo_tutorial_modifiers_assignment1_solution +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o -o ../bin/demo_tutorial_modifiers_assignment1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 88%] Built target demo_tutorial_modifiers_assignment1 +[ 88%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 make -f demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/depend.internal". +[ 88%] Linking CXX executable ../bin/demo_tutorial_consensus_alignment_with_positions +[ 88%] Built target demo_tutorial_modifiers_assignment1 +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/link.txt --verbose=1 +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/DependInfo.cmake --color= +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o -o ../bin/demo_tutorial_consensus_alignment_with_positions -lrt -lz -lbz2 Scanning dependencies of target demo_tutorial_modifiers_modview +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/depend.internal". make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/tutorial/modifiers/modview.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_modifiers_modview.dir/tutorial/modifiers/modview.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/modifiers/modview.cpp -[ 88%] Linking CXX executable ../bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/tutorial/journaled_string_tree/journaled_string_tree_base_assignment1.cpp.o -o ../bin/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 -lrt -lz -lbz2 -[ 88%] Linking CXX executable ../bin/demo_tutorial_consensus_alignment_with_positions -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/tutorial/consensus_alignment/with_positions.cpp.o -o ../bin/demo_tutorial_consensus_alignment_with_positions -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 88%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/depend.internal". Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 89%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 89%] Built target demo_tutorial_consensus_alignment_with_positions +[ 88%] Built target demo_tutorial_modifiers_assignment1_solution make -f demos/CMakeFiles/demo_dox_index_sufarray.dir/build.make demos/CMakeFiles/demo_dox_index_sufarray.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_sufarray.dir/DependInfo.cmake --color= +[ 89%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_sufarray.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_sufarray.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_sufarray.dir/depend.internal". Scanning dependencies of target demo_dox_index_sufarray @@ -111778,11 +111852,8 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 89%] Building CXX object demos/CMakeFiles/demo_dox_index_sufarray.dir/dox/index/sufarray.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_dox_index_sufarray.dir/dox/index/sufarray.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/dox/index/sufarray.cpp -[ 89%] Linking CXX executable ../bin/demo_tutorial_modifiers_assignment1_solution -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o -o ../bin/demo_tutorial_modifiers_assignment1_solution -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 89%] Built target demo_tutorial_modifiers_assignment1_solution +[ 89%] Built target demo_tutorial_consensus_alignment_with_positions make -f demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/DependInfo.cmake --color= @@ -111911,13 +111982,10 @@ cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/tutorial/journaled_set/solution_online_search_assignment2.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_assignment2 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 89%] Linking CXX executable ../bin/demo_dox_index_sufarray [ 89%] Built target demo_tutorial_journaled_set_solution_online_search_assignment2 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/depend -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_sufarray.dir/link.txt --verbose=1 make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/DependInfo.cmake --color= -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_sufarray.dir/dox/index/sufarray.cpp.o -o ../bin/demo_dox_index_sufarray -lrt -lz -lbz2 Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/depend.internal". Scanning dependencies of target demo_tutorial_parsing_command_line_arguments_example_with_modifyString @@ -111926,6 +111994,9 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 89%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/example_with_modifyString.cpp +[ 89%] Linking CXX executable ../bin/demo_dox_index_sufarray +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dox_index_sufarray.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_dox_index_sufarray.dir/dox/index/sufarray.cpp.o -o ../bin/demo_dox_index_sufarray -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 89%] Built target demo_dox_index_sufarray make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/depend @@ -111952,6 +112023,9 @@ Scanning dependencies of target demo_unassigned_or_unused_tutorials_custim_io_solution2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 90%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/unassigned_or_unused/tutorials_custim_io/solution2.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/unassigned_or_unused/tutorials_custim_io/solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution2.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, from /build/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/assignment1.cpp:4: /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h: In instantiation of 'bool seqan::convertAlignment(const seqan::Graph >&, seqan::Align&) [with TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = void; TSpec = const seqan::Tag; TSource = seqan::String, seqan::Alloc<> >; TSpec2 = seqan::Tag]': @@ -111965,9 +112039,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 90%] Building CXX object demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/unassigned_or_unused/tutorials_custim_io/solution2.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/unassigned_or_unused/tutorials_custim_io/solution2.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/unassigned_or_unused/tutorials_custim_io/solution2.cpp [ 90%] Linking CXX executable ../bin/demo_tutorial_journaled_set_solution_online_search_finder cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/tutorial/journaled_set/solution_online_search_finder.cpp.o -o ../bin/demo_tutorial_journaled_set_solution_online_search_finder -lrt -lz -lbz2 @@ -112143,6 +112214,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 90%] Linking CXX executable ../bin/demo_tutorial_blast_io_write_assignment +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/tutorial/blast_io/write_assignment.cpp.o -o ../bin/demo_tutorial_blast_io_write_assignment -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/workflows/knime_node.cpp:3: @@ -112218,22 +112292,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, - from /build/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/consensus.cpp:4: -/build/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h: In instantiation of 'bool seqan::convertAlignment(const seqan::Graph >&, seqan::Align&) [with TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = void; TSpec = const seqan::Tag; TSource = seqan::String, seqan::Alloc<> >; TSpec2 = seqan::Tag]': -/build/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:579:21: required from 'void seqan::globalMsaAlignment(seqan::Align&, const TScore&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TScore = seqan::Score >]' -/build/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/consensus.cpp:40:57: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:994:57: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] - 994 | for(TSize i = 0; i, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' - 91 | Iter(Iter const & other) : - | ^~~~ -[ 90%] Linking CXX executable ../bin/demo_tutorial_blast_io_write_assignment -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/tutorial/blast_io/write_assignment.cpp.o -o ../bin/demo_tutorial_blast_io_write_assignment -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 90%] Built target demo_tutorial_blast_io_write_assignment make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/depend @@ -112247,6 +112305,19 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 90%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/tutorial/pairwise_sequence_alignment/alignment_local.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/tutorial/pairwise_sequence_alignment/alignment_local.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/alignment_local.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_msa.h:44, + from /build/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/consensus.cpp:4: +/build/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h: In instantiation of 'bool seqan::convertAlignment(const seqan::Graph >&, seqan::Align&) [with TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = void; TSpec = const seqan::Tag; TSource = seqan::String, seqan::Alloc<> >; TSpec2 = seqan::Tag]': +/build/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_msa.h:579:21: required from 'void seqan::globalMsaAlignment(seqan::Align&, const TScore&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TScore = seqan::Score >]' +/build/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/consensus.cpp:40:57: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/graph_msa/graph_align_tcoffee_base.h:994:57: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] + 994 | for(TSize i = 0; i, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' + 91 | Iter(Iter const & other) : + | ^~~~ [ 90%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution2 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/unassigned_or_unused/tutorials_custim_io/solution2.cpp.o -o ../bin/demo_unassigned_or_unused_tutorials_custim_io_solution2 -lrt -lz -lbz2 @@ -112266,19 +112337,6 @@ [ 90%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/tutorial/pairwise_sequence_alignment/alignment_global_overlap.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 90%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/depend.internal". -Scanning dependencies of target demo_tutorial_pattern_matching_assignment2_solution -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 90%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/tutorial/pattern_matching/assignment2_solution.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/tutorial/pattern_matching/assignment2_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment2_solution.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/consensus.cpp:3: @@ -112299,6 +112357,7 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, from /build/seqan2-2.4.0+dfsg/demos/tutorial/multiple_sequence_alignment/consensus.cpp:3: @@ -112323,6 +112382,18 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ +[ 90%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/depend.internal". +Scanning dependencies of target demo_tutorial_pattern_matching_assignment2_solution +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 90%] Building CXX object demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/tutorial/pattern_matching/assignment2_solution.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/tutorial/pattern_matching/assignment2_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment2_solution.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/dox/index/textAt_indexText_saAt_indexRequire.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': @@ -112866,6 +112937,7 @@ cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/tutorial/pairwise_sequence_alignment/assignment5.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5.cpp [ 90%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_local cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/tutorial/pairwise_sequence_alignment/alignment_local.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_local -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality2.cpp:2: @@ -112890,12 +112962,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/tutorial/pairwise_sequence_alignment/alignment_local.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_local -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 90%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_local make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/depend.internal". +Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5_step1 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 91%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality2.cpp:2: @@ -112921,14 +113000,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/depend.internal". -Scanning dependencies of target demo_tutorial_pairwise_sequence_alignment_assignment5_step1 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 91%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/demos/tutorial/sequences/example_functionality2.cpp:1: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': @@ -112979,11 +113050,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 91%] Building CXX object demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/pairwise_sequence_alignment/assignment5_step3.cpp -[ 91%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard -lrt -lz -lbz2 +[ 91%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_standard +[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step1 make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/DependInfo.cmake --color= @@ -112995,11 +113066,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 91%] Building CXX object demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/tutorial/a_first_example/example_tags_for_print.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/tutorial/a_first_example/example_tags_for_print.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/a_first_example/example_tags_for_print.cpp -[ 91%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/pairwise_sequence_alignment/assignment5_step1.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step1 -lrt -lz -lbz2 +[ 91%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/tutorial/pairwise_sequence_alignment/alignment_global_standard.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step1 +[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_standard make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/DependInfo.cmake --color= @@ -113126,11 +113197,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ -[ 91%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step4 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step4 -lrt -lz -lbz2 +[ 91%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_file_io_example1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/unassigned_or_unused/tutorial_file_io/example1.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_file_io_example1 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step4 +[ 91%] Built target demo_unassigned_or_unused_tutorial_file_io_example1 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/DependInfo.cmake --color= @@ -113142,11 +113213,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 91%] Building CXX object demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/tutorial/parsing_command_line_arguments/assignment3_solution.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/tutorial/parsing_command_line_arguments/assignment3_solution.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/parsing_command_line_arguments/assignment3_solution.cpp -[ 91%] Linking CXX executable ../bin/demo_unassigned_or_unused_tutorial_file_io_example1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/unassigned_or_unused/tutorial_file_io/example1.cpp.o -o ../bin/demo_unassigned_or_unused_tutorial_file_io_example1 -lrt -lz -lbz2 +[ 91%] Linking CXX executable ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step4 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/tutorial/pairwise_sequence_alignment/assignment5_step4.cpp.o -o ../bin/demo_tutorial_pairwise_sequence_alignment_assignment5_step4 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 91%] Built target demo_unassigned_or_unused_tutorial_file_io_example1 +[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step4 make -f demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make demos/CMakeFiles/demo_howto_scores_init_score.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_scores_init_score.dir/DependInfo.cmake --color= @@ -113273,9 +113344,6 @@ [ 92%] Linking CXX executable ../bin/demo_tutorial_pattern_matching_assignment1 cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/tutorial/pattern_matching/assignment1.cpp.o -o ../bin/demo_tutorial_pattern_matching_assignment1 -lrt -lz -lbz2 -[ 92%] Linking CXX executable ../bin/demo_tutorial_workflows_knime_node -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_workflows_knime_node.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_workflows_knime_node.dir/tutorial/workflows/knime_node.cpp.o -o ../bin/demo_tutorial_workflows_knime_node -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 92%] Built target demo_tutorial_pattern_matching_assignment1 make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/depend @@ -113289,8 +113357,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 92%] Building CXX object demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/tutorial/q_gram_index/index_qgram.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/tutorial/q_gram_index/index_qgram.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/q_gram_index/index_qgram.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 92%] Built target demo_tutorial_workflows_knime_node In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/interval_tree.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::addInterval(TGraph&, TPropertyMap&, TInterval) [with TGraph = seqan::Graph > >; TPropertyMap = seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc<> >; TInterval = seqan::IntervalAndCargo > >]': @@ -113324,9 +113390,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ -make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/interval_tree.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc<> >; TValue = int; TCargo = seqan::String >]': @@ -113340,8 +113403,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/interval_tree.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:1453:23: warning: implicitly-declared 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>& seqan::IntervalTreeNode > >, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode > >, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] @@ -113362,12 +113423,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ -Scanning dependencies of target demo_tutorial_bed_io_solution3 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 92%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution3.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:56, from /build/seqan2-2.4.0+dfsg/demos/tutorial/simple_rna_seq/interval_tree.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h: In instantiation of 'void seqan::findIntervals(seqan::String&, const seqan::Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue) [with TSpec = seqan::Directed >; TPropertyMap = seqan::String > >, seqan::StorePointsOnly>, seqan::Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = seqan::String >]': @@ -113436,6 +113491,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode > >, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ +[ 92%] Linking CXX executable ../bin/demo_tutorial_workflows_knime_node +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_workflows_knime_node.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_workflows_knime_node.dir/tutorial/workflows/knime_node.cpp.o -o ../bin/demo_tutorial_workflows_knime_node -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 92%] Built target demo_tutorial_workflows_knime_node +make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/depend.internal". +Scanning dependencies of target demo_tutorial_bed_io_solution3 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 92%] Building CXX object demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o -c /build/seqan2-2.4.0+dfsg/demos/tutorial/bed_io/solution3.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/demos/tutorial/pattern_matching/assignment3.cpp:3: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': @@ -113510,9 +113581,6 @@ [ 93%] Linking CXX executable ../bin/demo_tutorial_simple_rna_seq_interval_tree cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/tutorial/simple_rna_seq/interval_tree.cpp.o -o ../bin/demo_tutorial_simple_rna_seq_interval_tree -lrt -lz -lbz2 -[ 93%] Linking CXX executable ../bin/demo_tutorial_bed_io_solution3 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_solution3.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o -o ../bin/demo_tutorial_bed_io_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 93%] Built target demo_tutorial_simple_rna_seq_interval_tree make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/depend @@ -113526,6 +113594,9 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 93%] Building CXX object apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/bs_tools && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -ffloat-store -ffp-contract=off -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/four2three.dir/four2three.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.cpp +[ 93%] Linking CXX executable ../bin/demo_tutorial_bed_io_solution3 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_bed_io_solution3.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_bed_io_solution3.dir/tutorial/bed_io/solution3.cpp.o -o ../bin/demo_tutorial_bed_io_solution3 -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 93%] Built target demo_tutorial_bed_io_solution3 make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/depend @@ -113566,17 +113637,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, - from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, - from /build/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:45: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.cpp:37: @@ -113749,6 +113809,17 @@ [ 94%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment3_solution cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/tutorial/parsing_command_line_arguments/assignment3_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment3_solution -lrt -lz -lbz2 +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus/overlap_info_computation.h:38, + from /build/seqan2-2.4.0+dfsg/include/seqan/consensus.h:65, + from /build/seqan2-2.4.0+dfsg/apps/bs_tools/casbar.cpp:45: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/apps/bs_tools/four2three.cpp:37: @@ -114016,6 +114087,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 94%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment6_solution +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/tutorial/parsing_command_line_arguments/assignment6_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment6_solution -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:90, from /build/seqan2-2.4.0+dfsg/include/seqan/store.h:38, from /build/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:41: @@ -114075,6 +114149,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 94%] Built target demo_tutorial_parsing_command_line_arguments_assignment6_solution +make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/fiona_illumina.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/fiona_illumina.dir/depend.internal". +Scanning dependencies of target fiona_illumina +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 94%] Building CXX object apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona && /usr/bin/c++ -DFIONA_ILLUMINA -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/fiona_illumina.dir/fiona.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:87, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:37: @@ -114093,9 +114180,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps, seqan::Alloc<> >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ -[ 94%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_assignment6_solution -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/tutorial/parsing_command_line_arguments/assignment6_solution.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_assignment6_solution -lrt -lz -lbz2 +[ 95%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/tutorial/parsing_command_line_arguments/example1.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example1 -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:38: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': @@ -114113,13 +114200,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 94%] Built target demo_tutorial_parsing_command_line_arguments_assignment6_solution -make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/fiona_illumina.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/fiona_illumina.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:39: @@ -114146,15 +114226,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 95%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example1 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/tutorial/parsing_command_line_arguments/example1.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example1 -lrt -lz -lbz2 -Scanning dependencies of target fiona_illumina -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 95%] Building CXX object apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona && /usr/bin/c++ -DFIONA_ILLUMINA -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/fiona_illumina.dir/fiona.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target demo_tutorial_parsing_command_line_arguments_example1 make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/depend @@ -114222,6 +114293,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 95%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example1_detailed +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/tutorial/parsing_command_line_arguments/example1_detailed.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example1_detailed -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 95%] Built target demo_tutorial_parsing_command_line_arguments_example1_detailed +make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/compute_gain.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/compute_gain.dir/depend.internal". +Scanning dependencies of target compute_gain +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 95%] Building CXX object apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/compute_gain.dir/compute_gain.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/fiona/compute_gain.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:39: @@ -114249,22 +114336,15 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 95%] Linking CXX executable ../bin/demo_tutorial_parsing_command_line_arguments_example1_detailed -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wno-unused-parameter -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/tutorial/parsing_command_line_arguments/example1_detailed.cpp.o -o ../bin/demo_tutorial_parsing_command_line_arguments_example1_detailed -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 95%] Built target demo_tutorial_parsing_command_line_arguments_example1_detailed -make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/compute_gain.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/compute_gain.dir/depend.internal". -Scanning dependencies of target compute_gain -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 95%] Building CXX object apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/compute_gain.dir/compute_gain.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/fiona/compute_gain.cpp +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:27: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/bs_tools/bisar.cpp:39: @@ -114316,15 +114396,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:27: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -114628,6 +114699,15 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/gaps_iterator_anchor.h:112:18: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 112 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -114656,6 +114736,15 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] + 320 | const_cast(indexText(me).data_begin) + | ^ +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here + 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { + | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -114684,15 +114773,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -114721,15 +114801,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h: In function 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:320:30: warning: 'bool seqan::indexCreate(seqan::Index >&, PizzaChiliCompressed)' is deprecated: The PizzaChiliIndex is outdated and is not maintained anymore. [-Wdeprecated-declarations] - 320 | const_cast(indexText(me).data_begin) - | ^ -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here - 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { - | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/dfi/dfi.cpp:26: @@ -115368,6 +115439,23 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 143 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:115: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:115: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -115395,23 +115483,51 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:115: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:578:18: required from 'bool seqan::loadReadsNoNames(seqan::FragmentStore&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:5438:64: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:115: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' +/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:5533:75: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -115471,34 +115587,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 134 | VertexSA(VertexSA const & other) : | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:578:18: required from 'bool seqan::loadReadsNoNames(seqan::FragmentStore&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:5438:64: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:115: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:105, from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:115: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]': @@ -115531,40 +115619,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' -/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:5533:75: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:115: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:115: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -115631,51 +115685,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:578:18: required from 'bool seqan::loadReadsNoNames(seqan::FragmentStore&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = seqan::String >]' -/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:5438:64: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:115: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown<>]': -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void; TSpec = seqan::TopDown<>]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' -/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:5533:75: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] - 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' - 134 | VertexSA(VertexSA const & other) : - | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: /build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown >]': @@ -115760,13 +115769,30 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:115: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:115: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagFasta_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' @@ -115788,6 +115814,23 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:138, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown<>]': +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2236:15: required from 'void seqan::clear(seqan::Iter >&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:312:10: required from 'void seqan::goRoot(seqan::Iter >, seqan::VSTree >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void; TSpec = seqan::TopDown<>]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:212:19: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' +/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:5533:75: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:2230:19: warning: implicitly-declared 'constexpr seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] + 2230 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:142, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:134:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' + 134 | VertexSA(VertexSA const & other) : + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -115816,6 +115859,34 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:46, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Embl_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: recursively required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList, seqan::TagList > > > > > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:578:18: required from 'bool seqan::loadReadsNoNames(seqan::FragmentStore&, TFileName&, const FionaOptions&) [with TFSSpec = void; TFSConfig = FionaStoreConfig; TFileName = seqan::String >]' +/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:5438:64: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:115: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:41, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:114: @@ -116419,6 +116490,31 @@ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' +/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' +/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:5533:75: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] + 534 | *cb->cur = pool.undefinedValue; + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:114: +/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' + 82 | inline Triple(Triple const &_p) + | ^~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, + from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, + from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' @@ -116469,31 +116565,6 @@ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:633:42: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:904:28: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:786:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7.h:312:20: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_skew7_multi.h:367:49: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_sa_stree.h:195:17: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:211:42: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/include/seqan/index/index_esa_stree.h:349:25: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' -/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:4874:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' -/build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:5533:75: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h:534:34: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] - 534 | *cb->cur = pool.undefinedValue; - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_aggregate.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:98, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:114: -/build/seqan2-2.4.0+dfsg/include/seqan/basic/triple_packed.h:82:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' - 82 | inline Triple(Triple const &_p) - | ^~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/pipe.h:74, - from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:42, - from /build/seqan2-2.4.0+dfsg/apps/fiona/fiona.cpp:117: /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; seqan::Handler::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:622:44: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; seqan::Handler, seqan::Tag >::TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /build/seqan2-2.4.0+dfsg/include/seqan/pipe/pool_base.h:881:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' @@ -118171,6 +118242,22 @@ /build/seqan2-2.4.0+dfsg/include/seqan/misc/interval_tree.h:288:5: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 288 | IntervalTreeNode(IntervalTreeNode const & other) : | ^~~~~~~~~~~~~~~~ +[ 96%] Linking CXX executable ../../bin/fx_fastq_stats +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -o ../../bin/fx_fastq_stats -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 96%] Built target fx_fastq_stats +make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/insegt /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/depend.internal". +Scanning dependencies of target insegt +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 96%] Building CXX object apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/insegt.dir/insegt.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -118222,9 +118309,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_qgram_openaddressing.h:143:9: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 143 | Index(Index const &other): | ^~~~~ -[ 96%] Linking CXX executable ../../bin/fx_fastq_stats -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -o ../../bin/fx_fastq_stats -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -118255,11 +118339,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 96%] Built target fx_fastq_stats -make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/insegt /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/apps/gustaf/gustaf.cpp:24: @@ -118306,14 +118385,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/align/align_base.h:104:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 104 | Align & operator=(Align const & other) | ^~~~~~~~ -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/depend.internal". -Scanning dependencies of target insegt -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 96%] Building CXX object apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.1.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/insegt.dir/insegt.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/apps/gustaf/gustaf.cpp:24: @@ -118897,51 +118968,51 @@ 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_genome.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:16: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGtf_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:848:15: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' +/build/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:26: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_genome.cpp:38: + from /build/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:13: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, - from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_genome.cpp:40: + from /build/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:14: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:16: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::TagGtf_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::True]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:257:14: required from 'seqan::FormattedFile::FormattedFile(const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/apps/insegt/overlap_module.h:848:15: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' -/build/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:199:26: required from here + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_genome.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:13: + from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_genome.cpp:38: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/apps/insegt/insegt.cpp:14: + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, + from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_genome.cpp:40: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ @@ -119846,6 +119917,9 @@ [ 97%] Linking CXX executable ../../bin/fiona cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fiona.dir/fiona.cpp.o -o ../../bin/fiona -lrt -lz -lbz2 +[ 97%] Linking CXX executable ../../bin/fiona_illumina +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona_illumina.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fiona_illumina.dir/fiona.cpp.o -o ../../bin/fiona_illumina -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 97%] Built target fiona make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/depend @@ -119853,22 +119927,19 @@ cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_simulator.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_simulator.dir/depend.internal". -Scanning dependencies of target mason_simulator -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 97%] Building CXX object apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp -[ 97%] Linking CXX executable ../../bin/fiona_illumina -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona_illumina.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/fiona_illumina.dir/fiona.cpp.o -o ../../bin/fiona_illumina -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 97%] Built target fiona_illumina make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/depend +Scanning dependencies of target mason_simulator +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/build make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_tests.dir/depend.internal". Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_tests.dir/depend.internal". +[ 97%] Building CXX object apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp Scanning dependencies of target mason_tests make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/build @@ -120154,6 +120225,63 @@ 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 159 | TLowcase lowcaseFileName(fileName); + | ^~~~~~~~~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' + 150 | ModifiedString(typename Parameter_::Type host): + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/apps/mason2/fragment_generation.h:52, from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:43: @@ -120180,6 +120308,29 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': +/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' +/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' +/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] + 443 | return me; + | ^~ +In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, + from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, + from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: +/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' + 117 | operator = (Segment const & source) + | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/apps/mason2/fragment_generation.h:52, @@ -120282,6 +120433,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 97%] Linking CXX executable ../../bin/insegt +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/insegt.dir/insegt.cpp.o -o ../../bin/insegt -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/seq_io.h:45, from /build/seqan2-2.4.0+dfsg/apps/mason2/fragment_generation.h:52, @@ -120310,34 +120464,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_iterator.h:80, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:86, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -120440,6 +120566,19 @@ /build/seqan2-2.4.0+dfsg/include/seqan/basic/iterator_adaptor.h:116:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 97%] Built target insegt +make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/micro_razers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/depend.internal". +Scanning dependencies of target micro_razers +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 97%] Building CXX object apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/basic/basic_fundamental.h:82, from /build/seqan2-2.4.0+dfsg/include/seqan/basic.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:74, @@ -120463,35 +120602,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:49, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 159 | TLowcase lowcaseFileName(fileName); - | ^~~~~~~~~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' - 150 | ModifiedString(typename Parameter_::Type host): - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:94, from /build/seqan2-2.4.0+dfsg/apps/mason2/fragment_generation.h:51, from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:43: @@ -120551,29 +120661,6 @@ 116 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': -/build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' -/build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:739:17: required from 'bool seqan::open(seqan::FormattedFile&, const char*, int) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void]' -/build/seqan2-2.4.0+dfsg/include/seqan/bam_io/bam_index_bai.h:699:35: required from here -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h:443:12: warning: implicitly-declared 'constexpr seqan::Segment::Segment(const seqan::Segment&)' is deprecated [-Wdeprecated-copy] - 443 | return me; - | ^~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/bam_io.h:47, - from /build/seqan2-2.4.0+dfsg/apps/mason2/sequencing.h:43, - from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_tests.cpp:40: -/build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' - 117 | operator = (Segment const & source) - | ^~~~~~~~ -In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/apps/mason2/fragment_generation.h:51, from /build/seqan2-2.4.0+dfsg/apps/mason2/mason_simulator.cpp:43: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = seqan::String, seqan::Alloc<> >; TSpec = seqan::InfixSegment; typename seqan::Pointer_ >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': @@ -120595,22 +120682,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_infix.h:143:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 143 | operator = (Segment const & source) | ^~~~~~~~ -[ 97%] Linking CXX executable ../../bin/insegt -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/insegt.dir/insegt.cpp.o -o ../../bin/insegt -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target insegt -make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/micro_razers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/depend.internal". -Scanning dependencies of target micro_razers -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 97%] Building CXX object apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:194, from /build/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:30, from /build/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:37: @@ -120621,11 +120692,11 @@ /build/seqan2-2.4.0+dfsg/include/seqan/index/index_pizzachili.h:307:1: note: declared here 307 | indexCreate(Index >& me, PizzaChiliCompressed const) { | ^~~~~~~~~~~ -[ 97%] Linking CXX executable ../../bin/mason_frag_sequencing -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -o ../../bin/mason_frag_sequencing -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 +[ 97%] Linking CXX executable ../../bin/mason_tests +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_tests.dir/mason_tests.cpp.o -o ../../bin/mason_tests -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target mason_frag_sequencing +[ 97%] Built target mason_tests make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= @@ -120637,11 +120708,11 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 97%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_feature_projection.cpp -[ 97%] Linking CXX executable ../../bin/mason_tests -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_tests.dir/mason_tests.cpp.o -o ../../bin/mason_tests -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 +[ 97%] Linking CXX executable ../../bin/mason_frag_sequencing +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -o ../../bin/mason_frag_sequencing -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target mason_tests +[ 97%] Built target mason_frag_sequencing make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= @@ -120653,9 +120724,6 @@ make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 97%] Building CXX object apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/bam2roi.dir/bam2roi.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/ngs_roi/bam2roi.cpp -[ 97%] Linking CXX executable ../../bin/mason_materializer -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -o ../../bin/mason_materializer -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -120683,13 +120751,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target mason_materializer -make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -120717,12 +120778,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -Scanning dependencies of target roi_plot_thumbnails -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 97%] Building CXX object apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_plot_thumbnails.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -120828,6 +120883,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 97%] Linking CXX executable ../../bin/mason_materializer +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -o ../../bin/mason_materializer -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:37: /build/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, seqan::Segment, unsigned int, TReadSet&, const TMyersPatterns&, const seqan::RazerSOptions&, seqan::SwiftSemiGlobalHamming) [with TMatch = seqan::ReadMatch; TGenome = seqan::String, seqan::Alloc<> >; TReadSet = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TMyersPatterns = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TSpec = seqan::RazerSSpec<>; seqan::SwiftSemiGlobalHamming = seqan::Tag >]': /build/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:1717:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, seqan::Pattern >&, TVerifier&, TCounts&, char, seqan::RazerSOptions&) [with TMatches = seqan::String >; TGenome = seqan::String, seqan::Alloc<> >; TReadIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >; TSwiftSpec = seqan::Tag >; TVerifier = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >, seqan::Alloc<> >; TCounts = seqan::String >; TSpec = seqan::RazerSSpec<>]' @@ -120902,6 +120960,13 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 97%] Built target mason_materializer +make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend.internal". In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/find.h:45, @@ -120930,6 +120995,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +Scanning dependencies of target roi_plot_thumbnails +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 97%] Building CXX object apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/ngs_roi/roi_plot_thumbnails.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/index.h:222, from /build/seqan2-2.4.0+dfsg/apps/micro_razers/../razers/razers.h:30, from /build/seqan2-2.4.0+dfsg/apps/micro_razers/micro_razers.cpp:37: @@ -121552,9 +121623,6 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -[ 97%] Linking CXX executable ../../bin/gustaf -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/gustaf.dir/gustaf.cpp.o -o ../../bin/gustaf -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/bam2roi.cpp:40: @@ -121581,19 +121649,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target gustaf -make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend.internal". -Scanning dependencies of target pair_align_lib -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 97%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.cpp +[ 97%] Linking CXX executable ../../bin/gustaf +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/gustaf.dir/gustaf.cpp.o -o ../../bin/gustaf -lrt -lz -lbz2 In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/arg_parse.h:46, from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/bam2roi.cpp:40: @@ -121649,6 +121707,9 @@ /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 97%] Built target gustaf +make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, @@ -121671,6 +121732,16 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend.internal". +Scanning dependencies of target pair_align_lib +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 97%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.cpp [ 97%] Linking CXX executable ../../bin/mason_variator cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_variator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_variator.dir/mason_variator.cpp.o -o ../../bin/mason_variator -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 @@ -121777,8 +121848,8 @@ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -o ../../bin/mason_splicing -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 97%] Built target mason_splicing -[ 97%] Building CXX object apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/razers/param_tabs.cpp +[ 97%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_spliced.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, @@ -121873,24 +121944,6 @@ cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/cmake -P CMakeFiles/pair_align_lib.dir/cmake_clean_target.cmake cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align_lib.dir/link.txt --verbose=1 /usr/bin/ar qc libpair_align_lib.a CMakeFiles/pair_align_lib.dir/pair_align_lib.cpp.o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -/usr/bin/ranlib libpair_align_lib.a -[ 97%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_spliced.cpp -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target pair_align_lib -make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/depend -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/CMakeFiles/pair_align.dir/depend.internal". -Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/CMakeFiles/pair_align.dir/depend.internal". -Scanning dependencies of target pair_align -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/build -make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 98%] Building CXX object apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp -[100%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, from /build/seqan2-2.4.0+dfsg/include/seqan/gff_io.h:47, from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_spliced.h:51, @@ -121971,12 +122024,12 @@ /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 98%] Building CXX object apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.2.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -121986,26 +122039,27 @@ 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, - from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' @@ -122016,25 +122070,29 @@ 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' @@ -122046,17 +122104,51 @@ 443 | return me; | ^~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, - from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, - from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: + from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, + from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, + from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, + from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ +[ 98%] Building CXX object apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/razers/param_tabs.cpp +/usr/bin/ranlib libpair_align_lib.a +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 98%] Built target pair_align_lib +make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/depend +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/CMakeFiles/pair_align.dir/depend.internal". +Dependee "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/CMakeFiles/pair_align.dir/depend.internal". +Scanning dependencies of target pair_align +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/build +make[4]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[100%] Building CXX object apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.8\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan2-2.4.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp +[100%] Linking CXX executable ../../bin/mason_simulator +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -o ../../bin/mason_simulator -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 +[100%] Linking CXX executable ../../bin/roi_plot_thumbnails +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -o ../../bin/roi_plot_thumbnails -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[100%] Built target mason_simulator +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[100%] Built target roi_plot_thumbnails +[100%] Linking CXX executable ../../bin/roi_feature_projection +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -o ../../bin/roi_feature_projection -lrt -lz -lbz2 +make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[100%] Built target roi_feature_projection In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/formatted_file.h:722:37: required from 'bool seqan::_open(seqan::FormattedFile&, const char*, int, TThrowExceptions) [with TFileFormat = seqan::Tag; TDirection = seqan::Tag; TSpec = void; TThrowExceptions = seqan::False]' @@ -122066,27 +122158,26 @@ 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: + from /build/seqan2-2.4.0+dfsg/include/seqan/score.h:43, + from /build/seqan2-2.4.0+dfsg/include/seqan/graph_align.h:45, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:59, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h: In instantiation of 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Sam_]': /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:114:36: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList >]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:120:35: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::TagSelector&) [with TFilename = seqan::Segment; TTagList = seqan::TagList, seqan::TagList > >]' @@ -122097,29 +122188,25 @@ 159 | TLowcase lowcaseFileName(fileName); | ^~~~~~~~~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:75, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:59, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:150:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' 150 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:95, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(seqan::Segment&) [with THost = const char*; TSpec = seqan::PrefixSegment; typename seqan::Pointer_ >::Type = seqan::Segment]': /build/seqan2-2.4.0+dfsg/include/seqan/modifier/modifier_view.h:151:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment; TFunctor = seqan::FunctorLowcase; typename seqan::Parameter_::Type = seqan::Segment]' /build/seqan2-2.4.0+dfsg/include/seqan/stream/guess_format.h:159:14: required from 'bool seqan::guessFormatFromFilename(const TFilename&, seqan::Tag) [with TFilename = seqan::Segment; TFormat_ = seqan::Bam_]' @@ -122131,29 +122218,13 @@ 443 | return me; | ^~ In file included from /build/seqan2-2.4.0+dfsg/include/seqan/sequence.h:98, - from /build/seqan2-2.4.0+dfsg/include/seqan/file.h:58, - from /build/seqan2-2.4.0+dfsg/include/seqan/stream.h:62, - from /build/seqan2-2.4.0+dfsg/include/seqan/bed_io.h:45, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.h:42, - from /build/seqan2-2.4.0+dfsg/apps/ngs_roi/project_interval.cpp:36: + from /build/seqan2-2.4.0+dfsg/include/seqan/modifier.h:47, + from /build/seqan2-2.4.0+dfsg/include/seqan/align.h:57, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/lib/pair_align_lib.h:41, + from /build/seqan2-2.4.0+dfsg/apps/pair_align/pair_align.cpp:16: /build/seqan2-2.4.0+dfsg/include/seqan/sequence/segment_prefix.h:117:5: note: because 'seqan::Segment' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const char*]' 117 | operator = (Segment const & source) | ^~~~~~~~ -[100%] Linking CXX executable ../../bin/mason_simulator -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -o ../../bin/mason_simulator -lrt -lz -lbz2 libmason_sim.a -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[100%] Built target mason_simulator -[100%] Linking CXX executable ../../bin/roi_plot_thumbnails -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -o ../../bin/roi_plot_thumbnails -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[100%] Built target roi_plot_thumbnails -[100%] Linking CXX executable ../../bin/roi_feature_projection -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -o ../../bin/roi_feature_projection -lrt -lz -lbz2 -make[4]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[100%] Built target roi_feature_projection [100%] Linking CXX executable ../../bin/bam2roi cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam2roi.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/seqan2-2.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -pedantic -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/bam2roi.dir/bam2roi.cpp.o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -o ../../bin/bam2roi -lrt -lz -lbz2 @@ -122197,1266 +122268,1274 @@ make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake --color= make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake --color= cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/seqan_library.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 0%] Built target seqan_library -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build +make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build'. +make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build +[ 0%] Built target seqan_library +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build +[ 0%] Built target pair_align_global_1011 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake --color= +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend +[ 0%] Built target pair_align_global_0000 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build'. +make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 0%] Built target pair_align_global_1001 -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/build -[ 0%] Built target pair_align_global_1111 -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend -[ 0%] Built target pair_align_global_0000 -[ 0%] Built target pair_align_global_1101 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake --color= -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend -[ 0%] Built target pair_align_global_1110 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake --color= make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 0%] Built target pair_align_global_1101 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake --color= make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend -[ 0%] Built target pair_align_global_1011 make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake --color= +make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 0%] Built target pair_align_global_1110 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake --color= -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake --color= +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 0%] Built target pair_align_global_1111 +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_sim.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build'. +make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 0%] Built target pair_align_global_0001 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 1%] Built target mason_sim +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake --color= -[ 1%] Built target pair_align_global_0011 -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build -[ 1%] Built target pair_align_global_0001 +make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build'. +make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_sim.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend +[ 0%] Built target pair_align_global_0010 make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 1%] Built target pair_align_global_0101 -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake --color= +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build +[ 0%] Built target pair_align_global_0011 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build'. +make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target pair_align_global_1010 -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target pair_align_global_0111 -[ 2%] Built target pair_align_global_0010 -[ 2%] Built target pair_align_global_1100 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake --color= +[ 0%] Built target pair_align_global_0101 make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend -make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build +[ 0%] Built target pair_align_global_0100 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake --color= -make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend +[ 1%] Built target mason_sim +[ 2%] Built target pair_align_global_1010 +make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend +[ 2%] Built target pair_align_global_1100 +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake --color= +make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/param_chooser /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= -[ 2%] Built target pair_align_global_0110 -make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/param_chooser /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend -make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/param_chooser /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= -[ 2%] Built target pair_align_global_0100 -make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend +[ 2%] Built target pair_align_global_0111 make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= +make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'. +make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_evaluate.dir/build'. +make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target pair_align_global_1000 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build +make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target test_funcs_param_chooser make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build'. +make[3]: Nothing to be done for 'apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build +make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build +[ 2%] Built target pair_align_global_0110 +[ 2%] Built target pair_align_global_1000 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/param_chooser/CMakeFiles/param_chooser.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target rabema_evaluate -make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'. +make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_do_search.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 2%] Built target pair_align_lcs +[ 2%] Built target pair_align_local +make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend +make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_do_search.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= -[ 2%] Built target pair_align_local -[ 2%] Built target rabema_build_gold_standard +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= +[ 2%] Built target test_funcs_param_chooser make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend -make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/razers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= [ 2%] Built target param_chooser +make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/razers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build [ 2%] Built target rabema_do_search make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend -make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/sak /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sak /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= -make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/rep_sep /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rep_sep /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/razers/CMakeFiles/razers.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3.dir/build'. +make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/sam2matrix /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= -make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target rabema_prepare_sam make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend +make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 2%] Built target razers3 -make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/samcat /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= -[ 2%] Built target razers3_simulate_reads -[ 3%] Built target razers -make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3_quality2prob.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/rep_sep/CMakeFiles/rep_sep.dir/build'. +make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_evaluate.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build +make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build +make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'. +make[3]: Nothing to be done for 'apps/razers/CMakeFiles/razers.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Built target rep_sep -make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 3%] Built target razers3_quality2prob -make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build +make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/sak/CMakeFiles/sak.dir/build'. +make[3]: Nothing to be done for 'apps/rep_sep/CMakeFiles/rep_sep.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/samcat/CMakeFiles/samcat.dir/build'. +make[3]: Nothing to be done for 'apps/razers3/CMakeFiles/razers3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 4%] Built target sam2matrix +[ 2%] Built target razers3_quality2prob +[ 2%] Built target rabema_build_gold_standard +[ 2%] Built target rabema_evaluate +[ 2%] Built target rabema_prepare_sam +make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend +[ 3%] Built target razers +make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/sak /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sak /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= +make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend +[ 3%] Built target rep_sep +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/sam2matrix /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend +[ 3%] Built target razers3_simulate_reads +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/samcat /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/searchjoin /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake --color= make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/searchjoin /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake --color= +[ 3%] Built target razers3 make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/seqan_tcoffee /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= -make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend -make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/searchjoin /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake --color= +make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/sgip /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= -make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/snp_store /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/seqcons2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake --color= -[ 4%] Built target sak -make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend -[ 4%] Built target samcat -make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/searchjoin/CMakeFiles/s4_join.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/splazers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/sgip/CMakeFiles/sgip.dir/build'. +make[3]: Nothing to be done for 'apps/sak/CMakeFiles/sak.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/stellar /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'apps/samcat/CMakeFiles/samcat.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build +make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/searchjoin/CMakeFiles/s4_search.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/snp_store/CMakeFiles/snp_store.dir/build'. +make[3]: Nothing to be done for 'apps/searchjoin/CMakeFiles/s4_join.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/sgip/CMakeFiles/sgip.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 4%] Built target sam2matrix make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build -[ 4%] Built target s4_join make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/seqcons2/CMakeFiles/seqcons2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build -[ 4%] Built target sgip -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 4%] Built target sak +make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend +make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend [ 4%] Built target s4_search -make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build +[ 4%] Built target samcat +[ 4%] Built target seqcons2 +make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/splazers/CMakeFiles/splazers.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 5%] Built target snp_store +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/snp_store /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= +[ 4%] Built target s4_join make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/stellar/CMakeFiles/stellar.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/tree_recon /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/tree_recon /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= -[ 5%] Built target seqan_tcoffee +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/splazers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/depend -[ 5%] Built target splazers +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/stellar /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= +[ 4%] Built target sgip make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/tree_recon /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/tree_recon /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= +[ 4%] Built target seqan_tcoffee +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/yara /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_mapper.dir/DependInfo.cmake --color= make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/depend -make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/yara /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake --color= -[ 5%] Built target seqcons2 -make -f tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/depend +make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/DependInfo.cmake --color= -make -f tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/DependInfo.cmake --color= -[ 5%] Built target stellar make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/build +make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/build +make[3]: Nothing to be done for 'apps/splazers/CMakeFiles/splazers.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/tree_recon/CMakeFiles/tree_recon.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build +make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build +make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/build +make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/yara/CMakeFiles/yara_indexer.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build'. +make[3]: Nothing to be done for 'apps/tree_recon/CMakeFiles/tree_recon.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/snp_store/CMakeFiles/snp_store.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/stellar/CMakeFiles/stellar.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/yara/CMakeFiles/yara_mapper.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_variable_length.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build'. +make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_local_equal_length.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 5%] Built target tree_recon -[ 6%] Built target yara_mapper -[ 6%] Built target yara_indexer -[ 6%] Built target test_align_simd_local_equal_length +[ 4%] Built target splazers +[ 4%] Built target yara_indexer +[ 5%] Built target snp_store +make -f tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/depend +make -f tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/depend +[ 5%] Built target stellar make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/depend -make -f tests/align_extend/CMakeFiles/test_align_extend.dir/build.make tests/align_extend/CMakeFiles/test_align_extend.dir/depend +[ 5%] Built target tree_recon +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align.dir/DependInfo.cmake --color= +make -f tests/align_extend/CMakeFiles/test_align_extend.dir/build.make tests/align_extend/CMakeFiles/test_align_extend.dir/depend make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_extend /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_extend /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_extend/CMakeFiles/test_align_extend.dir/DependInfo.cmake --color= -[ 7%] Built target test_align_simd_local_variable_length +[ 6%] Built target yara_mapper make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 6%] Built target test_align_simd_local_equal_length make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_extend /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_extend /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_extend/CMakeFiles/test_align_extend.dir/DependInfo.cmake --color= cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Built target test_align_simd_global_equal_length -[ 7%] Built target test_align_simd_global_variable_length -make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/DependInfo.cmake --color= +[ 7%] Built target test_align_simd_local_variable_length make -f tests/align_profile/CMakeFiles/test_align_profile.dir/build.make tests/align_profile/CMakeFiles/test_align_profile.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_profile /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_profile /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_profile/CMakeFiles/test_align_profile.dir/DependInfo.cmake --color= -make -f tests/align_split/CMakeFiles/test_align_split.dir/build.make tests/align_split/CMakeFiles/test_align_split.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_split /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_split /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_split/CMakeFiles/test_align_split.dir/DependInfo.cmake --color= -make -f tests/alignment_free/CMakeFiles/test_alignment_free.dir/build.make tests/alignment_free/CMakeFiles/test_alignment_free.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/alignment_free /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/alignment_free /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/alignment_free/CMakeFiles/test_alignment_free.dir/DependInfo.cmake --color= -[ 7%] Built target test_align +make -f tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build.make tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build'. +make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_equal_length.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align_simd_global_variable_length.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/align_extend/CMakeFiles/test_align_extend.dir/build.make tests/align_extend/CMakeFiles/test_align_extend.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/arg_parse /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/arg_parse /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/DependInfo.cmake --color= -make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/align/CMakeFiles/test_align.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/align_extend/CMakeFiles/test_align_extend.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build'. +[ 7%] Built target test_align_simd_global_variable_length make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build'. +make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_algorithm.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/alignment_free/CMakeFiles/test_alignment_free.dir/build.make tests/alignment_free/CMakeFiles/test_alignment_free.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_interface.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 7%] Built target test_align_simd_global_equal_length make -f tests/align_profile/CMakeFiles/test_align_profile.dir/build.make tests/align_profile/CMakeFiles/test_align_profile.dir/build -make -f tests/align_split/CMakeFiles/test_align_split.dir/build.make tests/align_split/CMakeFiles/test_align_split.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/align_profile/CMakeFiles/test_align_profile.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 7%] Built target test_align_extend +make -f tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build.make tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build +make -f tests/align_split/CMakeFiles/test_align_split.dir/build.make tests/align_split/CMakeFiles/test_align_split.dir/depend +make -f tests/alignment_free/CMakeFiles/test_alignment_free.dir/build.make tests/alignment_free/CMakeFiles/test_alignment_free.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/alignment_free/CMakeFiles/test_alignment_free.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/align_split/CMakeFiles/test_align_split.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 7%] Built target test_align_parallel_algorithm +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/align_profile/CMakeFiles/test_align_profile.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build'. +make[3]: Nothing to be done for 'tests/align_parallel/CMakeFiles/test_align_parallel_data_structures.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/align_split /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_split /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/align_split/CMakeFiles/test_align_split.dir/DependInfo.cmake --color= [ 7%] Built target test_align_parallel_interface -[ 7%] Built target test_align_extend -[ 8%] Built target test_align_parallel_data_structures -[ 8%] Built target test_alignment_free +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/arg_parse /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/arg_parse /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/DependInfo.cmake --color= make -f tests/arg_parse/CMakeFiles/test_arg_parse.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/alignment_free /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/alignment_free /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/alignment_free/CMakeFiles/test_alignment_free.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/bam_io/CMakeFiles/test_bam_io.dir/build.make tests/bam_io/CMakeFiles/test_bam_io.dir/depend cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/arg_parse /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/arg_parse /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/arg_parse/CMakeFiles/test_arg_parse.dir/DependInfo.cmake --color= +[ 7%] Built target test_align +[ 7%] Built target test_align_parallel_algorithm +make -f tests/bam_io/CMakeFiles/test_bam_io.dir/build.make tests/bam_io/CMakeFiles/test_bam_io.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/bam_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bam_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bam_io/CMakeFiles/test_bam_io.dir/DependInfo.cmake --color= make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_exception.dir/DependInfo.cmake --color= +[ 7%] Built target test_align_profile make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/depend -[ 8%] Built target test_align_profile -[ 8%] Built target test_align_split -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/DependInfo.cmake --color= -make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/bam_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bam_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bam_io/CMakeFiles/test_bam_io.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/DependInfo.cmake --color= -make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/depend -make -f tests/basic/CMakeFiles/test_basic_concept.dir/build.make tests/basic/CMakeFiles/test_basic_concept.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/DependInfo.cmake --color= -[ 8%] Built target test_arg_parse_version_check -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_concept.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/DependInfo.cmake --color= make -f tests/arg_parse/CMakeFiles/test_arg_parse.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/alignment_free/CMakeFiles/test_alignment_free.dir/build.make tests/alignment_free/CMakeFiles/test_alignment_free.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/arg_parse/CMakeFiles/test_arg_parse.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 8%] Built target test_align_parallel_data_structures +make -f tests/align_split/CMakeFiles/test_align_split.dir/build.make tests/align_split/CMakeFiles/test_align_split.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build.make tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_exception.dir/build'. +make[3]: Nothing to be done for 'tests/alignment_free/CMakeFiles/test_alignment_free.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_container.dir/build.make tests/basic/CMakeFiles/test_basic_container.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_container.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'tests/align_split/CMakeFiles/test_align_split.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/bam_io/CMakeFiles/test_bam_io.dir/build.make tests/bam_io/CMakeFiles/test_bam_io.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build +make -f tests/bam_io/CMakeFiles/test_bam_io.dir/build.make tests/bam_io/CMakeFiles/test_bam_io.dir/build +make -f tests/basic/CMakeFiles/test_basic_exception.dir/build.make tests/basic/CMakeFiles/test_basic_exception.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build'. +make[3]: Nothing to be done for 'tests/arg_parse/CMakeFiles/test_arg_parse_version_check.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 8%] Built target test_arg_parse make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/bam_io/CMakeFiles/test_bam_io.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_math.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/build +make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_exception.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_concept.dir/build.make tests/basic/CMakeFiles/test_basic_concept.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_fundamental.dir/build'. +make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 8%] Built target test_alignment_free +[ 8%] Built target test_align_split +make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_concept.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 8%] Built target test_arg_parse -make -f tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make tests/basic/CMakeFiles/test_basic_aggregate.dir/depend -[ 8%] Built target test_basic_math +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_math.dir/DependInfo.cmake --color= +make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/depend +[ 8%] Built target test_arg_parse_version_check make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_aggregate.dir/DependInfo.cmake --color= -make -f tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make tests/basic/CMakeFiles/test_basic_alphabet.dir/depend +make -f tests/basic/CMakeFiles/test_basic_concept.dir/build.make tests/basic/CMakeFiles/test_basic_concept.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_fundamental.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_concept.dir/DependInfo.cmake --color= +make -f tests/basic/CMakeFiles/test_basic_container.dir/build.make tests/basic/CMakeFiles/test_basic_container.dir/depend +[ 8%] Built target test_bam_io +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_container.dir/DependInfo.cmake --color= +make -f tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make tests/basic/CMakeFiles/test_basic_aggregate.dir/depend +[ 8%] Built target test_basic_metaprogramming [ 8%] Built target test_basic_exception +make -f tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make tests/basic/CMakeFiles/test_basic_alphabet.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_alphabet.dir/DependInfo.cmake --color= -[ 9%] Built target test_basic_fundamental -[ 9%] Built target test_bam_io make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/depend -[ 9%] Built target test_basic_metaprogramming -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_container.dir/build.make tests/basic/CMakeFiles/test_basic_container.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_aggregate.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_container.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_allocator.dir/DependInfo.cmake --color= make -f tests/basic/CMakeFiles/test_basic_parallelism.dir/build.make tests/basic/CMakeFiles/test_basic_parallelism.dir/depend -make -f tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make tests/basic/CMakeFiles/test_basic_smart_pointer.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_parallelism.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/DependInfo.cmake --color= -make -f tests/basic/CMakeFiles/test_basic_proxy.dir/build.make tests/basic/CMakeFiles/test_basic_proxy.dir/depend -[ 9%] Built target test_basic_concept -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_proxy.dir/DependInfo.cmake --color= -make -f tests/basic/CMakeFiles/test_basic_iterator.dir/build.make tests/basic/CMakeFiles/test_basic_iterator.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/basic/CMakeFiles/test_basic_math.dir/build.make tests/basic/CMakeFiles/test_basic_math.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_iterator.dir/DependInfo.cmake --color= -make -f tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make tests/basic/CMakeFiles/test_basic_alphabet.dir/build +make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_math.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 9%] Built target test_basic_container +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/basic/CMakeFiles/test_basic_concept.dir/build.make tests/basic/CMakeFiles/test_basic_concept.dir/build +make -f tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make tests/basic/CMakeFiles/test_basic_fundamental.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_alphabet.dir/build'. +make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_concept.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make tests/basic/CMakeFiles/test_basic_aggregate.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_aggregate.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_allocator.dir/build'. +make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_fundamental.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_parallelism.dir/build.make tests/basic/CMakeFiles/test_basic_parallelism.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_parallelism.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/basic/CMakeFiles/test_basic_container.dir/build.make tests/basic/CMakeFiles/test_basic_container.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_container.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make tests/basic/CMakeFiles/test_basic_alphabet.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build'. +make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_alphabet.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_proxy.dir/build.make tests/basic/CMakeFiles/test_basic_proxy.dir/build +[ 8%] Built target test_basic_concept +make -f tests/basic/CMakeFiles/test_basic_allocator.dir/build.make tests/basic/CMakeFiles/test_basic_allocator.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_proxy.dir/build'. +make -f tests/basic/CMakeFiles/test_basic_parallelism.dir/build.make tests/basic/CMakeFiles/test_basic_parallelism.dir/build +make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_allocator.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/basic/CMakeFiles/test_basic_iterator.dir/build.make tests/basic/CMakeFiles/test_basic_iterator.dir/build +[ 8%] Built target test_basic_math make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_iterator.dir/build'. +make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_parallelism.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 9%] Built target test_basic_fundamental +[ 10%] Built target test_basic_aggregate +make -f tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make tests/basic/CMakeFiles/test_basic_smart_pointer.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/basic/CMakeFiles/test_basic_proxy.dir/build.make tests/basic/CMakeFiles/test_basic_proxy.dir/depend +[ 10%] Built target test_basic_container +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_proxy.dir/DependInfo.cmake --color= +make -f tests/basic/CMakeFiles/test_basic_iterator.dir/build.make tests/basic/CMakeFiles/test_basic_iterator.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/basic/CMakeFiles/test_basic_iterator.dir/DependInfo.cmake --color= +[ 10%] Built target test_basic_alphabet make -f tests/bed_io/CMakeFiles/test_bed_io.dir/build.make tests/bed_io/CMakeFiles/test_bed_io.dir/depend -[ 9%] Built target test_basic_alphabet -[ 9%] Built target test_basic_parallelism -make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/depend +[ 10%] Built target test_basic_allocator make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/bed_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/DependInfo.cmake --color= +[ 10%] Built target test_basic_parallelism +make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/depend make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/depend -[ 9%] Built target test_basic_allocator -[ 10%] Built target test_basic_iterator -[ 10%] Built target test_basic_aggregate make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/blast /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/blast/CMakeFiles/test_blast.dir/DependInfo.cmake --color= -make -f tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build.make tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/bed_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/bed_io/CMakeFiles/test_bed_io.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build +make -f tests/basic/CMakeFiles/test_basic_proxy.dir/build.make tests/basic/CMakeFiles/test_basic_proxy.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 11%] Built target test_basic_smart_pointer +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/consensus /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_proxy.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build.make tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/depend make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/basic/CMakeFiles/test_basic_iterator.dir/build.make tests/basic/CMakeFiles/test_basic_iterator.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/consensus_v2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus_v2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/DependInfo.cmake --color= -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/consensus /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/consensus/CMakeFiles/test_consensus.dir/DependInfo.cmake --color= -make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/depend -[ 11%] Built target test_basic_proxy make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/find /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/find/CMakeFiles/test_find.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/gff_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/DependInfo.cmake --color= -make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/depend -make -f tests/graph_align/CMakeFiles/test_graph_align.dir/build.make tests/graph_align/CMakeFiles/test_graph_align.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_align/CMakeFiles/test_graph_align.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_algorithms /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'tests/basic/CMakeFiles/test_basic_iterator.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 11%] Built target test_basic_smart_pointer make -f tests/bed_io/CMakeFiles/test_bed_io.dir/build.make tests/bed_io/CMakeFiles/test_bed_io.dir/build +[ 11%] Built target test_basic_proxy +make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/bed_io/CMakeFiles/test_bed_io.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/gff_io/CMakeFiles/test_gff_io.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/consensus/CMakeFiles/test_consensus.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 11%] Built target test_bed_io -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/gff_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/gff_io/CMakeFiles/test_gff_io.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/blast/CMakeFiles/test_blast.dir/build.make tests/blast/CMakeFiles/test_blast.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/consensus/CMakeFiles/test_consensus.dir/build.make tests/consensus/CMakeFiles/test_consensus.dir/build +[ 11%] Built target test_basic_iterator +[ 11%] Built target test_bed_io make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build'. +make[3]: Nothing to be done for 'tests/blast/CMakeFiles/test_blast.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build.make tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build -[ 11%] Built target test_gff_io make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/blast/CMakeFiles/test_blast.dir/build'. +make[3]: Nothing to be done for 'tests/consensus/CMakeFiles/test_consensus.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/find/CMakeFiles/test_find.dir/build.make tests/find/CMakeFiles/test_find.dir/build -make -f tests/graph_align/CMakeFiles/test_graph_align.dir/build.make tests/graph_align/CMakeFiles/test_graph_align.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/find/CMakeFiles/test_find.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_algorithms /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/graph_align/CMakeFiles/test_graph_align.dir/build'. +make[3]: Nothing to be done for 'tests/find/CMakeFiles/test_find.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/consensus_v2/CMakeFiles/test_consensus_v2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/gff_io/CMakeFiles/test_gff_io.dir/build.make tests/gff_io/CMakeFiles/test_gff_io.dir/build +[ 11%] Built target test_blast [ 11%] Built target test_consensus +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/gff_io/CMakeFiles/test_gff_io.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/graph_align/CMakeFiles/test_graph_align.dir/build.make tests/graph_align/CMakeFiles/test_graph_align.dir/depend +[ 12%] Built target test_find make -f tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make tests/graph_msa/CMakeFiles/test_graph_msa.dir/depend -make -f tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_utils.dir/depend -[ 12%] Built target test_graph_algorithms +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_align/CMakeFiles/test_graph_align.dir/DependInfo.cmake --color= +make -f tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_msa /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_msa/CMakeFiles/test_graph_msa.dir/DependInfo.cmake --color= +make -f tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_utils.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 12%] Built target test_consensus_v2 +[ 12%] Built target test_gff_io make -f tests/graph_types/CMakeFiles/test_graph_types_types.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_types.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_utils.dir/DependInfo.cmake --color= make -f tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_types.dir/DependInfo.cmake --color= -[ 13%] Built target test_find -[ 13%] Built target test_consensus_v2 make -f tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_derived.dir/depend -[ 12%] Built target test_graph_align -[ 13%] Built target test_blast -make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/DependInfo.cmake --color= +make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/graph_align/CMakeFiles/test_graph_align.dir/build.make tests/graph_align/CMakeFiles/test_graph_align.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_derived.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_swift.dir/build.make tests/index/CMakeFiles/test_index_swift.dir/depend cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_swift.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/graph_types/CMakeFiles/test_graph_types_derived.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/graph_align/CMakeFiles/test_graph_align.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make tests/graph_msa/CMakeFiles/test_graph_msa.dir/build -make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/graph_msa/CMakeFiles/test_graph_msa.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 13%] Built target test_graph_algorithms +make -f tests/index/CMakeFiles/test_index_swift.dir/build.make tests/index/CMakeFiles/test_index_swift.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_swift.dir/DependInfo.cmake --color= +make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build +make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 13%] Built target test_graph_align make -f tests/graph_types/CMakeFiles/test_graph_types_types.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_types.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_utils.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_types.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_iterators.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build.make tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_derived.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_swift.dir/build.make tests/index/CMakeFiles/test_index_swift.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/graph_types/CMakeFiles/test_graph_types_property_map.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/build [ 13%] Built target test_graph_msa +[ 13%] Built target test_graph_types_property_map +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_swift.dir/build.make tests/index/CMakeFiles/test_index_swift.dir/build +[ 13%] Built target test_graph_types_utils +[ 15%] Built target test_graph_types_types +make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_swift.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 15%] Built target test_graph_types_iterators make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_find2_index_approx.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 13%] Built target test_graph_types_utils -[ 15%] Built target test_graph_types_types +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find2_index_approx.dir/DependInfo.cmake --color= make -f tests/index/CMakeFiles/test_find_backtracking.dir/build.make tests/index/CMakeFiles/test_find_backtracking.dir/depend -[ 15%] Built target test_graph_types_iterators +[ 15%] Built target test_graph_types_derived make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_find_backtracking.dir/DependInfo.cmake --color= make -f tests/index/CMakeFiles/test_index_repeats.dir/build.make tests/index/CMakeFiles/test_index_repeats.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/DependInfo.cmake --color= make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/depend -[ 16%] Built target test_index_swift -[ 16%] Built target test_graph_types_property_map make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_repeats.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_view.dir/DependInfo.cmake --color= -[ 16%] Built target test_find2_index_approx make -f tests/index/CMakeFiles/test_index_creation.dir/build.make tests/index/CMakeFiles/test_index_creation.dir/depend +make -f tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_vstree.dir/DependInfo.cmake --color= -[ 16%] Built target test_graph_types_derived -make -f tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_creation.dir/DependInfo.cmake --color= +[ 16%] Built target test_index_swift make -f tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/DependInfo.cmake --color= -make -f tests/index/CMakeFiles/test_index_bifm.dir/build.make tests/index/CMakeFiles/test_index_bifm.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_bifm.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/build +make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build +make -f tests/index/CMakeFiles/test_find2_index_approx.dir/build.make tests/index/CMakeFiles/test_find2_index_approx.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/index/CMakeFiles/test_find_backtracking.dir/build.make tests/index/CMakeFiles/test_find_backtracking.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_repeats.dir/build.make tests/index/CMakeFiles/test_index_repeats.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_vstree.dir/build'. +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_view.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build'. +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_find2_index_approx.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_find_backtracking.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_repeats.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_repeats.dir/build.make tests/index/CMakeFiles/test_index_repeats.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_view.dir/build.make tests/index/CMakeFiles/test_index_view.dir/build make -f tests/index/CMakeFiles/test_index_creation.dir/build.make tests/index/CMakeFiles/test_index_creation.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 16%] Built target test_index_vstree -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_view.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_vstree.dir/build.make tests/index/CMakeFiles/test_index_vstree.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 16%] Built target test_index_view make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_repeats.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_creation.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 16%] Built target test_index_sa_bwtwalk +[ 16%] Built target test_find2_index_approx +[ 16%] Built target test_find_backtracking make -f tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build -make -f tests/index/CMakeFiles/test_index_bifm.dir/build.make tests/index/CMakeFiles/test_index_bifm.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_bifm.dir/build'. +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_vstree.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_bifm.dir/build.make tests/index/CMakeFiles/test_index_bifm.dir/depend [ 16%] Built target test_index_repeats -[ 16%] Built target test_find_backtracking make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/depend -[ 16%] Built target test_index_view make -f tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna.dir/depend -[ 17%] Built target test_index_crosscompare_char_dfi -[ 17%] Built target test_index_bifm +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_bifm.dir/DependInfo.cmake --color= +[ 16%] Built target test_index_creation make -f tests/index/CMakeFiles/test_index_finder.dir/build.make tests/index/CMakeFiles/test_index_finder.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_dna.dir/DependInfo.cmake --color= -make -f tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_qgram.dir/DependInfo.cmake --color= -make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/depend +make -f tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_finder.dir/DependInfo.cmake --color= +[ 16%] Built target test_index_vstree +[ 16%] Built target test_index_sa_bwtwalk +make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/DependInfo.cmake --color= -make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_shapes.dir/DependInfo.cmake --color= +make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/depend +[ 17%] Built target test_index_crosscompare_char_dfi make -f tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/DependInfo.cmake --color= -[ 17%] Built target test_index_creation -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/DependInfo.cmake --color= -make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/DependInfo.cmake --color= -make -f tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_crosscompare_char.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/build +make -f tests/index/CMakeFiles/test_index_bifm.dir/build.make tests/index/CMakeFiles/test_index_bifm.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build'. +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_bifm.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_qgram.dir/build.make tests/index/CMakeFiles/test_index_qgram.dir/build +make -f tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/index/CMakeFiles/test_index_finder.dir/build.make tests/index/CMakeFiles/test_index_finder.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_qgram.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_char.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/build +make -f tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_char.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build'. +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_finder.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build.make tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_finder.dir/build'. +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 17%] Built target test_index_bifm make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_drawing.dir/build'. +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_shapes.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_char.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_shapes.dir/build.make tests/index/CMakeFiles/test_index_shapes.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_shapes.dir/build'. +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 17%] Built target test_index_shapes +[ 17%] Built target test_index_qgram [ 17%] Built target test_index_crosscompare_dna +make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/depend make -f tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build.make tests/index/CMakeFiles/test_index_fm_sparse_string.dir/depend -[ 18%] Built target test_index_fm_rank_dictionary make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/depend +[ 17%] Built target test_index_finder make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_drawing.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm_sparse_string.dir/DependInfo.cmake --color= -[ 18%] Built target test_index_qgram make -f tests/index/CMakeFiles/test_index_base.dir/build.make tests/index/CMakeFiles/test_index_base.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/build -[ 18%] Built target test_index_crosscompare_dna_dfi +[ 18%] Built target test_index_fm_rank_dictionary +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_fm.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/index/CMakeFiles/test_index_base.dir/DependInfo.cmake --color= +[ 18%] Built target test_index_shapes make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/depend -[ 18%] Built target test_index_crosscompare_char +[ 18%] Built target test_index_crosscompare_dna_dfi make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/depend -[ 18%] Built target test_index_drawing -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_fm.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_set /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_set/CMakeFiles/test_journaled_set.dir/DependInfo.cmake --color= -[ 18%] Built target test_index_finder +make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/DependInfo.cmake --color= -make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/depend -[ 18%] Built target test_index_fm +[ 18%] Built target test_index_crosscompare_char +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/DependInfo.cmake --color= make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build.make tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/index/CMakeFiles/test_index_drawing.dir/build.make tests/index/CMakeFiles/test_index_drawing.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/DependInfo.cmake --color= -make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/depend +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_drawing.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_fm_sparse_string.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/DependInfo.cmake --color= +make -f tests/index/CMakeFiles/test_index_fm.dir/build.make tests/index/CMakeFiles/test_index_fm.dir/build make -f tests/index/CMakeFiles/test_index_base.dir/build.make tests/index/CMakeFiles/test_index_base.dir/build -make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_base.dir/build'. +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_fm.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build'. +make -f tests/journaled_set/CMakeFiles/test_journaled_set.dir/build.make tests/journaled_set/CMakeFiles/test_journaled_set.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_set/CMakeFiles/test_journaled_set.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build.make tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'tests/index/CMakeFiles/test_index_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 18%] Built target test_journaled_set -make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build +[ 18%] Built target test_index_drawing make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_traverser.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 18%] Built target test_journaled_string_tree_find +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree_find.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build.make tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_delta_map.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 18%] Built target test_index_fm_sparse_string +make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/depend +[ 18%] Built target test_index_base +[ 18%] Built target test_index_fm +make -f tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build.make tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/depend +[ 18%] Built target test_journaled_set +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/DependInfo.cmake --color= make -f tests/map/CMakeFiles/test_map.dir/build.make tests/map/CMakeFiles/test_map.dir/depend -make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/depend +[ 19%] Built target test_journaled_string_tree_traverser +[ 19%] Built target test_delta_map +[ 19%] Built target test_journaled_string_tree_find make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/map /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/map /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/map/CMakeFiles/test_map.dir/DependInfo.cmake --color= +make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/depend +make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/misc /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/misc/CMakeFiles/test_misc.dir/DependInfo.cmake --color= -[ 18%] Built target test_delta_map -make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 18%] Built target test_index_fm_sparse_string -[ 18%] Built target test_index_base +make -f tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build.make tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build -[ 19%] Built target test_journaled_string_tree_traverser cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/modifier /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier/CMakeFiles/test_modifier.dir/DependInfo.cmake --color= -make -f tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build.make tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/DependInfo.cmake --color= +make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build.make tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build +make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_journaled_string_tree.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/modifier_cyclic_shape /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build.make tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build -make -f tests/map/CMakeFiles/test_map.dir/build.make tests/map/CMakeFiles/test_map.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/map/CMakeFiles/test_map.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/multiple_translation_units /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/DependInfo.cmake --color= +make -f tests/map/CMakeFiles/test_map.dir/build.make tests/map/CMakeFiles/test_map.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/journaled_string_tree/CMakeFiles/test_basic_observable.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/modifier/CMakeFiles/test_modifier.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/map/CMakeFiles/test_map.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/misc/CMakeFiles/test_misc.dir/build.make tests/misc/CMakeFiles/test_misc.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/misc/CMakeFiles/test_misc.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 19%] Built target test_journaled_string_tree -make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/depend -make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/modifier/CMakeFiles/test_modifier.dir/build.make tests/modifier/CMakeFiles/test_modifier.dir/build make -f tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build.make tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parallel/CMakeFiles/test_parallel.dir/DependInfo.cmake --color= -[ 19%] Built target test_misc -make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/depend -make -f tests/pipe/CMakeFiles/test_pipe.dir/build.make tests/pipe/CMakeFiles/test_pipe.dir/depend -[ 19%] Built target test_map +make[3]: Nothing to be done for 'tests/modifier/CMakeFiles/test_modifier.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/modifier_cyclic_shape/CMakeFiles/test_modifier_cyclic_shape.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/parallel/CMakeFiles/test_parallel.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build +[ 19%] Built target test_journaled_string_tree +make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/depend [ 19%] Built target test_basic_observable make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/pipe/CMakeFiles/test_pipe.dir/build.make tests/pipe/CMakeFiles/test_pipe.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/parse_lm /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/parse_lm/CMakeFiles/test_parse_lm.dir/DependInfo.cmake --color= +[ 19%] Built target test_map make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/pipe /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/pipe /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/pipe/CMakeFiles/test_pipe.dir/DependInfo.cmake --color= -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/multiple_translation_units /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/DependInfo.cmake --color= [ 19%] Built target test_modifier make -f tests/platform/CMakeFiles/test_platform.dir/build.make tests/platform/CMakeFiles/test_platform.dir/depend +[ 19%] Built target test_modifier_cyclic_shape +[ 19%] Built target test_misc make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/platform /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/platform /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/platform/CMakeFiles/test_platform.dir/DependInfo.cmake --color= make -f tests/random/CMakeFiles/test_random.dir/build.make tests/random/CMakeFiles/test_random.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/random /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/random /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/random/CMakeFiles/test_random.dir/DependInfo.cmake --color= -make -f tests/parallel/CMakeFiles/test_parallel.dir/build.make tests/parallel/CMakeFiles/test_parallel.dir/build +[ 20%] Built target test_parallel make -f tests/realign/CMakeFiles/test_realign.dir/build.make tests/realign/CMakeFiles/test_realign.dir/depend +make -f tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build.make tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/parallel/CMakeFiles/test_parallel.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 19%] Built target test_modifier_cyclic_shape +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/random /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/random /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/random/CMakeFiles/test_random.dir/DependInfo.cmake --color= +make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/realign /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/realign /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/realign/CMakeFiles/test_realign.dir/DependInfo.cmake --color= -make -f tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build.make tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build.make tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/reduced_aminoacid /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/reduced_aminoacid /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/build -[ 20%] Built target test_parallel -make -f tests/platform/CMakeFiles/test_platform.dir/build.make tests/platform/CMakeFiles/test_platform.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/parse_lm/CMakeFiles/test_parse_lm.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/rna_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/DependInfo.cmake --color= +[ 20%] Built target test_multiple_translation_units +make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/roi_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/pipe/CMakeFiles/test_pipe.dir/build.make tests/pipe/CMakeFiles/test_pipe.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/random/CMakeFiles/test_random.dir/build.make tests/random/CMakeFiles/test_random.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/platform/CMakeFiles/test_platform.dir/build'. +make[3]: Nothing to be done for 'tests/random/CMakeFiles/test_random.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/multiple_translation_units/CMakeFiles/test_multiple_translation_units.dir/build'. +make[3]: Nothing to be done for 'tests/pipe/CMakeFiles/test_pipe.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/pipe/CMakeFiles/test_pipe.dir/build.make tests/pipe/CMakeFiles/test_pipe.dir/build -[ 20%] Built target test_multiple_translation_units +make -f tests/parse_lm/CMakeFiles/test_parse_lm.dir/build.make tests/parse_lm/CMakeFiles/test_parse_lm.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/platform/CMakeFiles/test_platform.dir/build.make tests/platform/CMakeFiles/test_platform.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/realign/CMakeFiles/test_realign.dir/build.make tests/realign/CMakeFiles/test_realign.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/platform/CMakeFiles/test_platform.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/parse_lm/CMakeFiles/test_parse_lm.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build.make tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/rna_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/rna_io/CMakeFiles/test_rna_io.dir/DependInfo.cmake --color= -[ 20%] Built target test_parse_lm -make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/depend -make[3]: Nothing to be done for 'tests/pipe/CMakeFiles/test_pipe.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/build +[ 20%] Built target test_random +make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/realign/CMakeFiles/test_realign.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/random/CMakeFiles/test_random.dir/build.make tests/random/CMakeFiles/test_random.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/reduced_aminoacid/CMakeFiles/test_reduced_aminoacid.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 20%] Built target test_platform -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/roi_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/roi_io/CMakeFiles/test_roi_io.dir/DependInfo.cmake --color= +[ 20%] Built target test_pipe make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/random/CMakeFiles/test_random.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/rna_io/CMakeFiles/test_rna_io.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/rna_io/CMakeFiles/test_rna_io.dir/build.make tests/rna_io/CMakeFiles/test_rna_io.dir/build -[ 20%] Built target test_realign make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/rna_io/CMakeFiles/test_rna_io.dir/build'. +make[3]: Nothing to be done for 'tests/roi_io/CMakeFiles/test_roi_io.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 20%] Built target test_pipe make -f tests/score/CMakeFiles/test_score.dir/build.make tests/score/CMakeFiles/test_score.dir/depend +[ 20%] Built target test_parse_lm +[ 20%] Built target test_realign make -f tests/seeds/CMakeFiles/test_seeds_combination.dir/build.make tests/seeds/CMakeFiles/test_seeds_combination.dir/depend -[ 21%] Built target test_reduced_aminoacid make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/score /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/score /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/score/CMakeFiles/test_score.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Built target test_random -make -f tests/roi_io/CMakeFiles/test_roi_io.dir/build.make tests/roi_io/CMakeFiles/test_roi_io.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_combination.dir/DependInfo.cmake --color= +[ 20%] Built target test_platform make -f tests/seeds/CMakeFiles/test_seeds_extension.dir/build.make tests/seeds/CMakeFiles/test_seeds_extension.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/roi_io/CMakeFiles/test_roi_io.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_combination.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_extension.dir/DependInfo.cmake --color= make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/depend +[ 21%] Built target test_rna_io +[ 21%] Built target test_reduced_aminoacid make -f tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build.make tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/depend +make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/depend +[ 21%] Built target test_roi_io make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_base.dir/DependInfo.cmake --color= -[ 21%] Built target test_rna_io +make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/DependInfo.cmake --color= -make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/depend -make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 21%] Built target test_roi_io -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/seeds/CMakeFiles/test_seeds_combination.dir/build.make tests/seeds/CMakeFiles/test_seeds_combination.dir/build -make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/score/CMakeFiles/test_score.dir/build.make tests/score/CMakeFiles/test_score.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_combination.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/DependInfo.cmake --color= +make -f tests/seeds/CMakeFiles/test_seeds_extension.dir/build.make tests/seeds/CMakeFiles/test_seeds_extension.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/score/CMakeFiles/test_score.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/seeds/CMakeFiles/test_seeds_combination.dir/build.make tests/seeds/CMakeFiles/test_seeds_combination.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build'. +make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_extension.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_combination.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/seeds/CMakeFiles/test_seeds_extension.dir/build.make tests/seeds/CMakeFiles/test_seeds_extension.dir/build make -f tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build.make tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build -[ 21%] Built target test_seeds_seed_base -[ 21%] Built target test_score -make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_extension.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build +make -f tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_global_chaining.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_chained.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_diagonal.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build +[ 21%] Built target test_score make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_set_unordered.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 22%] Built target test_seeds_combination +[ 22%] Built target test_seeds_extension make -f tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/depend make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/depend -[ 22%] Built target test_seeds_extension -make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/depend -[ 22%] Built target test_seeds_seed_chained +[ 22%] Built target test_seeds_seed_base +[ 22%] Built target test_seeds_global_chaining make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/DependInfo.cmake --color= +[ 22%] Built target test_seeds_seed_diagonal +[ 22%] Built target test_seeds_seed_chained make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/DependInfo.cmake --color= +make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/depend make -f tests/seq_io/CMakeFiles/test_seq_io.dir/build.make tests/seq_io/CMakeFiles/test_seq_io.dir/depend -[ 22%] Built target test_seeds_seed_set_unordered -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/DependInfo.cmake --color= make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seq_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/DependInfo.cmake --color= -[ 22%] Built target test_seeds_seed_diagonal +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/sequence /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_stringset_v2.dir/DependInfo.cmake --color= -[ 22%] Built target test_seeds_global_chaining make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/seq_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/seq_io/CMakeFiles/test_seq_io.dir/DependInfo.cmake --color= make -f tests/sequence/CMakeFiles/test_sequence.dir/build.make tests/sequence/CMakeFiles/test_sequence.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/sequence /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_sequence_v2.dir/DependInfo.cmake --color= -make -f tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build.make tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/depend +[ 22%] Built target test_seeds_seed_set_unordered make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/sequence /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence/CMakeFiles/test_sequence.dir/DependInfo.cmake --color= +make -f tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build.make tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/sequence_journaled /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence_journaled /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/build +make -f tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/seq_io/CMakeFiles/test_seq_io.dir/build.make tests/seq_io/CMakeFiles/test_seq_io.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/sequence/CMakeFiles/test_stringset_v2.dir/build'. +make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/seq_io/CMakeFiles/test_seq_io.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build.make tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build -make -f tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build.make tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build +make -f tests/sequence/CMakeFiles/test_stringset_v2.dir/build.make tests/sequence/CMakeFiles/test_stringset_v2.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/sequence/CMakeFiles/test_sequence.dir/build.make tests/sequence/CMakeFiles/test_sequence.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make tests/sequence/CMakeFiles/test_sequence_v2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/sequence/CMakeFiles/test_sequence_v2.dir/build'. +make[3]: Nothing to be done for 'tests/sequence/CMakeFiles/test_stringset_v2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/sequence/CMakeFiles/test_sequence.dir/build.make tests/sequence/CMakeFiles/test_sequence.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_seed_set_base.dir/build'. +make[3]: Nothing to be done for 'tests/sequence/CMakeFiles/test_sequence_v2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build.make tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' @@ -123465,3011 +123544,3006 @@ make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_banded_chain_alignment_interface.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build.make tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build -[ 22%] Built target test_stringset_v2 -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/seeds/CMakeFiles/test_seeds_align_banded_chain_impl.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 22%] Built target test_sequence_v2 -[ 22%] Built target test_seq_io -make -f tests/simd/CMakeFiles/test_simd_vector.dir/build.make tests/simd/CMakeFiles/test_simd_vector.dir/depend [ 23%] Built target test_seeds_seed_set_base +[ 23%] Built target test_seq_io [ 23%] Built target test_seeds_align_banded_chain_impl +[ 23%] Built target test_seeds_banded_chain_alignment_interface +make -f tests/simd/CMakeFiles/test_simd_vector.dir/build.make tests/simd/CMakeFiles/test_simd_vector.dir/depend +[ 23%] Built target test_sequence_v2 +make -f tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build.make tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/depend +[ 23%] Built target test_sequence make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/simd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/simd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/simd/CMakeFiles/test_simd_vector.dir/DependInfo.cmake --color= -make -f tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build.make tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/depend -[ 23%] Built target test_seeds_banded_chain_alignment_interface make -f tests/statistics/CMakeFiles/test_statistics.dir/build.make tests/statistics/CMakeFiles/test_statistics.dir/depend +make -f tests/store/CMakeFiles/test_store.dir/build.make tests/store/CMakeFiles/test_store.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/simple_intervals_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/simple_intervals_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/statistics /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/statistics /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/statistics/CMakeFiles/test_statistics.dir/DependInfo.cmake --color= -make -f tests/simd/CMakeFiles/test_simd_vector.dir/build.make tests/simd/CMakeFiles/test_simd_vector.dir/build -[ 23%] Built target test_sequence_journaled -[ 23%] Built target test_sequence -make -f tests/store/CMakeFiles/test_store.dir/build.make tests/store/CMakeFiles/test_store.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/simd/CMakeFiles/test_simd_vector.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/store /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/store /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/store/CMakeFiles/test_store.dir/DependInfo.cmake --color= +[ 23%] Built target test_stringset_v2 make -f tests/stream/CMakeFiles/test_stream.dir/build.make tests/stream/CMakeFiles/test_stream.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/store /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/store /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/store/CMakeFiles/test_store.dir/DependInfo.cmake --color= +[ 23%] Built target test_sequence_journaled make -f tests/swift_local/CMakeFiles/test_find_swift.dir/build.make tests/swift_local/CMakeFiles/test_find_swift.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/stream /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/stream/CMakeFiles/test_stream.dir/DependInfo.cmake --color= make -f tests/tabix_io/CMakeFiles/test_tabix_io.dir/build.make tests/tabix_io/CMakeFiles/test_tabix_io.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/translation/CMakeFiles/test_translation.dir/build.make tests/translation/CMakeFiles/test_translation.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/swift_local /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/swift_local /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/swift_local/CMakeFiles/test_find_swift.dir/DependInfo.cmake --color= -make -f tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build.make tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/tabix_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/tabix_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/tabix_io/CMakeFiles/test_tabix_io.dir/DependInfo.cmake --color= -[ 24%] Built target test_simd_vector -make -f tests/translation/CMakeFiles/test_translation.dir/build.make tests/translation/CMakeFiles/test_translation.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/translation /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/translation /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/translation/CMakeFiles/test_translation.dir/DependInfo.cmake --color= -make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/simd/CMakeFiles/test_simd_vector.dir/build.make tests/simd/CMakeFiles/test_simd_vector.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build.make tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/store/CMakeFiles/test_store.dir/build.make tests/store/CMakeFiles/test_store.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/ucsc_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/DependInfo.cmake --color= -make -f tests/swift_local/CMakeFiles/test_find_swift.dir/build.make tests/swift_local/CMakeFiles/test_find_swift.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/store/CMakeFiles/test_store.dir/build'. +make[3]: Nothing to be done for 'tests/simd/CMakeFiles/test_simd_vector.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/statistics/CMakeFiles/test_statistics.dir/build.make tests/statistics/CMakeFiles/test_statistics.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/swift_local/CMakeFiles/test_find_swift.dir/build'. +make[3]: Nothing to be done for 'tests/simple_intervals_io/CMakeFiles/test_simple_intervals_io.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/store/CMakeFiles/test_store.dir/build.make tests/store/CMakeFiles/test_store.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/tabix_io/CMakeFiles/test_tabix_io.dir/build.make tests/tabix_io/CMakeFiles/test_tabix_io.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/statistics/CMakeFiles/test_statistics.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f tests/stream/CMakeFiles/test_stream.dir/build.make tests/stream/CMakeFiles/test_stream.dir/build -make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/store/CMakeFiles/test_store.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/stream/CMakeFiles/test_stream.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 23%] Built target test_simple_intervals_io make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 24%] Built target test_store -make -f tests/statistics/CMakeFiles/test_statistics.dir/build.make tests/statistics/CMakeFiles/test_statistics.dir/build +[ 24%] Built target test_simd_vector +make -f tests/translation/CMakeFiles/test_translation.dir/build.make tests/translation/CMakeFiles/test_translation.dir/build +make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build'. +make[3]: Nothing to be done for 'tests/translation/CMakeFiles/test_translation.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/statistics/CMakeFiles/test_statistics.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/tabix_io/CMakeFiles/test_tabix_io.dir/build.make tests/tabix_io/CMakeFiles/test_tabix_io.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/ucsc_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/DependInfo.cmake --color= +[ 24%] Built target test_statistics +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'tests/tabix_io/CMakeFiles/test_tabix_io.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 24%] Built target test_find_swift -make -f tests/translation/CMakeFiles/test_translation.dir/build.make tests/translation/CMakeFiles/test_translation.dir/build +make -f tests/swift_local/CMakeFiles/test_find_swift.dir/build.make tests/swift_local/CMakeFiles/test_find_swift.dir/build +[ 24%] Built target test_store +make -f tests/vcf_io/CMakeFiles/test_vcf_io.dir/build.make tests/vcf_io/CMakeFiles/test_vcf_io.dir/depend +[ 24%] Built target test_stream make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/translation/CMakeFiles/test_translation.dir/build'. +make[3]: Nothing to be done for 'tests/swift_local/CMakeFiles/test_find_swift.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 24%] Built target test_stream -[ 24%] Built target test_simple_intervals_io -[ 24%] Built target test_ucsc_io -make -f tests/vcf_io/CMakeFiles/test_vcf_io.dir/build.make tests/vcf_io/CMakeFiles/test_vcf_io.dir/depend +[ 24%] Built target test_translation +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/vcf_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/vcf_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/vcf_io/CMakeFiles/test_vcf_io.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/depend +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/depend -[ 25%] Built target test_tabix_io make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/tests/vcf_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/vcf_io /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/tests/vcf_io/CMakeFiles/test_vcf_io.dir/DependInfo.cmake --color= -[ 25%] Built target test_translation make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/depend -[ 25%] Built target test_statistics -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 25%] Built target test_tabix_io +make -f tests/vcf_io/CMakeFiles/test_vcf_io.dir/build.make tests/vcf_io/CMakeFiles/test_vcf_io.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build.make tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build +make[3]: Nothing to be done for 'tests/vcf_io/CMakeFiles/test_vcf_io.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 25%] Built target test_find_swift make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'tests/ucsc_io/CMakeFiles/test_ucsc_io.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build +[ 25%] Built target test_vcf_io make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/DependInfo.cmake --color= -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/DependInfo.cmake --color= make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution4.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f tests/vcf_io/CMakeFiles/test_vcf_io.dir/build.make tests/vcf_io/CMakeFiles/test_vcf_io.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build +[ 25%] Built target test_ucsc_io +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 26%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution4 -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'tests/vcf_io/CMakeFiles/test_vcf_io.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 26%] Built target demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_gff2.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_example1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 26%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution4 +[ 26%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution3 +[ 26%] Built target demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_generic_characters.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution3.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 26%] Built target demo_unassigned_or_unused_tutorial_sequence_count_generic_characters -[ 26%] Built target test_vcf_io make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_replace_as.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 26%] Built target demo_unassigned_or_unused_tutorials_custim_io_example1 -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/depend +make -f demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/depend +make -f demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/DependInfo.cmake --color= -[ 26%] Built target demo_unassigned_or_unused_tutorials_custim_io_parse_gff2 -[ 26%] Built target demo_unassigned_or_unused_tutorial_sequence_replace_as -[ 26%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution3 -make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 26%] Built target demo_unassigned_or_unused_tutorial_sequence_sequence_iterator_demo +[ 26%] Built target demo_unassigned_or_unused_tutorial_sequence_count_generic_characters make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/depend cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/depend +[ 26%] Built target demo_unassigned_or_unused_tutorial_sequence_replace_as +make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/depend +[ 26%] Built target demo_unassigned_or_unused_tutorial_file_io_mmap_string_example make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/depend +make -f demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_mmap_string_example.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build +make -f demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build +make -f demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_sam2svg.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 26%] Built target demo_unassigned_or_unused_tutorial_file_io_mmap_string_example +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_segmentalignment.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build'. +make -f demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_sample_seqs.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build +make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 26%] Built target demo_unassigned_or_unused_segmentalignment -[ 26%] Built target demo_unassigned_or_unused_sam2svg make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_modifier_modview.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_parse_lm_stellar.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build -[ 27%] Built target demo_unassigned_or_unused_parse_lm_stellar make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_qgram_counts.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_modifier_modreverse.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 26%] Built target demo_unassigned_or_unused_sample_seqs make -f demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build -make -f demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_node_predicate.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/DependInfo.cmake --color= -[ 27%] Built target demo_unassigned_or_unused_modifier_modview +[ 26%] Built target demo_unassigned_or_unused_sam2svg +[ 26%] Built target demo_unassigned_or_unused_segmentalignment +[ 26%] Built target demo_unassigned_or_unused_index_qgram_counts +make -f demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/depend +[ 27%] Built target demo_unassigned_or_unused_parse_lm_stellar make -f demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/depend -[ 27%] Built target demo_unassigned_or_unused_index_qgram_counts -[ 27%] Built target demo_unassigned_or_unused_sample_seqs +[ 27%] Built target demo_unassigned_or_unused_modifier_modview make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/DependInfo.cmake --color= [ 27%] Built target demo_unassigned_or_unused_modifier_modreverse -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build -make -f demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/depend -make -f demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/depend +[ 27%] Built target demo_unassigned_or_unused_index_node_predicate make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/depend +make -f demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/DependInfo.cmake --color= -[ 27%] Built target demo_unassigned_or_unused_index_node_predicate +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_mums.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_file_speed.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build +make -f demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_lcp.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build -[ 27%] Built target demo_unassigned_or_unused_index_mums make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_find.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_file_format.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 29%] Built target demo_unassigned_or_unused_file_speed +[ 27%] Built target demo_unassigned_or_unused_file_format +[ 27%] Built target demo_unassigned_or_unused_index_find make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 29%] Built target demo_unassigned_or_unused_index_find -make -f demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build -[ 29%] Built target demo_unassigned_or_unused_index_lcp +[ 27%] Built target demo_unassigned_or_unused_index_mums +[ 27%] Built target demo_unassigned_or_unused_file_readwrite +make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/depend +[ 27%] Built target demo_unassigned_or_unused_index_lcp make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/DependInfo.cmake --color= -[ 29%] Built target demo_unassigned_or_unused_file_format -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_file_readwrite.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 29%] Built target demo_unassigned_or_unused_file_speed +make -f demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/DependInfo.cmake --color= [ 29%] Built target demo_unassigned_or_unused_benchmark_stream -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_bamutil.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 29%] Built target demo_unassigned_or_unused_bamutil +make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/depend -[ 29%] Built target demo_unassigned_or_unused_file_readwrite -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 29%] Built target demo_unassigned_or_unused_bamutil -make -f demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_bam_print_alignments.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_bam_library_size.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_arg_align.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build +make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_alphabet.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_solution3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_example_functionality_2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 29%] Built target demo_unassigned_or_unused_arg_align -[ 29%] Built target demo_unassigned_or_unused_bam_library_size -make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/depend -make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/DependInfo.cmake --color= -[ 30%] Built target demo_tutorial_vcf_io_solution2 -make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/depend +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_solution2.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 30%] Built target demo_unassigned_or_unused_bam_print_alignments make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/depend +[ 30%] Built target demo_unassigned_or_unused_bam_library_size +[ 30%] Built target demo_unassigned_or_unused_arg_align +make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/DependInfo.cmake --color= -[ 31%] Built target demo_unassigned_or_unused_alphabet +make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/depend +[ 30%] Built target demo_unassigned_or_unused_alphabet make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/depend -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/depend -[ 31%] Built target demo_tutorial_vcf_io_solution3 +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/DependInfo.cmake --color= [ 31%] Built target demo_tutorial_string_sets_example_functionality_2 -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/depend +[ 31%] Built target demo_tutorial_vcf_io_solution3 +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/depend +[ 31%] Built target demo_tutorial_vcf_io_solution2 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/depend +[ 31%] Built target demo_tutorial_string_sets_assignment_3_workshop_solution +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build +make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build'. +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_2.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution4.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution5.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build +make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build'. +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 31%] Built target demo_tutorial_string_sets_assignment_2 -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution2.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 31%] Built target demo_tutorial_string_sets_assignment_3_workshop_solution -[ 32%] Built target demo_tutorial_string_sets_assignment_1_solution -make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/depend +[ 31%] Built target demo_tutorial_simple_rna_seq_genequant_solution5 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/depend -[ 32%] Built target demo_tutorial_simple_rna_seq_genequant_solution5 -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 31%] Built target demo_tutorial_string_sets_assignment_2_solution +[ 32%] Built target demo_tutorial_string_sets_assignment_1_solution [ 32%] Built target demo_tutorial_simple_rna_seq_genequant_solution4 -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/DependInfo.cmake --color= -[ 32%] Built target demo_tutorial_simple_rna_seq_genequant_solution2 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/depend +[ 32%] Built target demo_unassigned_or_unused_minimapper +[ 32%] Built target demo_tutorial_simple_rna_seq_genequant_solution2 +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/DependInfo.cmake --color= -[ 32%] Built target demo_tutorial_string_sets_assignment_2_solution -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/depend +make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/DependInfo.cmake --color= -[ 32%] Built target demo_tutorial_simple_rna_seq_genequant_solution3 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/depend +[ 32%] Built target demo_tutorial_simple_rna_seq_genequant_solution3 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_minimapper.dir/build'. +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build -[ 33%] Built target demo_tutorial_simple_rna_seq_genequant_solution1 -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_solution1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_in_depth_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment4.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 33%] Built target demo_unassigned_or_unused_find_wild -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 33%] Built target demo_unassigned_or_unused_minimapper -make -f demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_iterator.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_find_wild.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 33%] Built target demo_tutorial_simple_rna_seq_genequant_assignment3 +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/depend -[ 33%] Built target demo_tutorial_sequences_in_depth_base +make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment3.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 33%] Built target demo_tutorial_simple_rna_seq_genequant_solution1 +[ 33%] Built target demo_unassigned_or_unused_iterator [ 33%] Built target demo_tutorial_simple_rna_seq_genequant_assignment4 make -f demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/depend -make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/depend +[ 33%] Built target demo_unassigned_or_unused_find_wild make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 33%] Built target demo_tutorial_sequences_in_depth_base +make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/depend cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_sequences_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_base.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/DependInfo.cmake --color= -[ 33%] Built target demo_tutorial_simple_rna_seq_genequant_assignment1 +make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_base.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/depend make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/depend -[ 33%] Built target demo_unassigned_or_unused_iterator -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 33%] Built target demo_tutorial_sequences_in_depth_assignment_exact_generous_solution make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/depend +[ 33%] Built target demo_tutorial_simple_rna_seq_genequant_assignment1 make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build +[ 33%] Built target demo_tutorial_simple_rna_seq_genequant_assignment3 +make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_segments.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequences_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_base.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_base.dir/build'. +make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build -make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build -[ 33%] Built target demo_tutorial_sequences_example_segments make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sequences_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_base.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_base.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_conversions_copy.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 33%] Built target demo_tutorial_sequences_in_depth_assignment_exact_generous_solution -make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build -make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_5_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 33%] Built target demo_tutorial_sequences_example_segments make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_2_solution.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build +make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_1_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 33%] Built target demo_tutorial_sequences_base -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 33%] Built target demo_tutorial_sequences_assignment_2_solution -[ 33%] Built target demo_tutorial_sequences_example_conversions_copy -make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_3.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 33%] Built target demo_tutorial_sequences_assignment_3 +[ 33%] Built target demo_tutorial_sequences_example_conversions_copy +[ 33%] Built target demo_tutorial_sequences_base make -f demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/depend [ 34%] Built target demo_tutorial_sequences_assignment_5_solution -[ 34%] Built target demo_tutorial_sequences_assignment_1_solution -make -f demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_example1.dir/depend +make -f demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/depend +[ 34%] Built target demo_tutorial_sequences_assignment_2_solution make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seeds_example1.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_example1.dir/depend +[ 34%] Built target demo_tutorial_sequences_assignment_1_solution make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 34%] Built target demo_tutorial_sequences_assignment_3 +[ 34%] Built target demo_tutorial_sequence_io_solution3 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seeds_example1.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/depend +make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 34%] Built target demo_tutorial_sequence_io_solution3 -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build'. -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build +make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build -[ 34%] Built target demo_tutorial_sequence_io_base -make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build'. make -f demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build +[ 34%] Built target demo_tutorial_sequence_io_base +[ 34%] Built target demo_tutorial_sequence_io_example1 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seeds_example1.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_sequence_length.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 34%] Built target demo_tutorial_seed_and_extend_solution5 -[ 34%] Built target demo_tutorial_sequence_io_example1 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/DependInfo.cmake --color= -[ 34%] Built target demo_tutorial_seeds_example1 +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 34%] Built target demo_tutorial_seed_and_extend_solution6 -[ 35%] Built target demo_tutorial_seed_and_extend_solution2 +[ 34%] Built target demo_tutorial_seeds_example1 +make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/depend +[ 34%] Built target demo_tutorial_seed_and_extend_solution5 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/depend +[ 35%] Built target demo_tutorial_seed_and_extend_solution2 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/DependInfo.cmake --color= +[ 36%] Built target demo_unassigned_or_unused_sequence_length make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/depend +[ 36%] Built target demo_tutorial_seed_and_extend_example6 +make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/DependInfo.cmake --color= -[ 36%] Built target demo_unassigned_or_unused_sequence_length +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_reader_demo.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build +[ 36%] Built target demo_tutorial_seed_and_extend_example5 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution3.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 36%] Built target demo_tutorial_seed_and_extend_example6 [ 37%] Built target demo_tutorial_seed_and_extend_example3 -[ 37%] Built target demo_tutorial_seed_and_extend_example5 -make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/depend -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/depend -[ 37%] Built target demo_tutorial_seed_and_extend_example1 -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/DependInfo.cmake --color= +[ 37%] Built target demo_unassigned_or_unused_tutorials_custim_io_reader_demo make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/DependInfo.cmake --color= -[ 37%] Built target demo_tutorial_sam_and_bam_io_solution3 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/depend -make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/DependInfo.cmake --color= -[ 37%] Built target demo_unassigned_or_unused_tutorials_custim_io_reader_demo +make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/depend [ 37%] Built target demo_tutorial_seed_and_extend_example4 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/depend +[ 37%] Built target demo_tutorial_sam_and_bam_io_solution3 make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/DependInfo.cmake --color= +[ 38%] Built target demo_tutorial_simple_rna_seq_base make -f demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build +[ 38%] Built target demo_tutorial_sam_and_bam_io_solution2 +[ 38%] Built target demo_tutorial_seed_and_extend_example1 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_realignment_step2.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution2.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step1.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_base.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_realignment_step1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 37%] Built target demo_tutorial_sam_and_bam_io_solution2 -make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_solution1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_modifier_nested.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example1.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build +[ 38%] Built target demo_tutorial_sam_and_bam_io_solution1 +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_base.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_realignment_step2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 38%] Built target demo_tutorial_simple_rna_seq_base [ 39%] Built target demo_tutorial_sam_and_bam_io_example2 -[ 39%] Built target demo_tutorial_sam_and_bam_io_base -[ 39%] Built target demo_tutorial_sam_and_bam_io_example1 -make -f demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step1.dir/depend -[ 39%] Built target demo_tutorial_sam_and_bam_io_solution1 -make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_realignment_step1.dir/DependInfo.cmake --color= -[ 39%] Built target demo_unassigned_or_unused_modifier_nested +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/depend +[ 39%] Built target demo_unassigned_or_unused_modifier_nested make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 39%] Built target demo_tutorial_sam_and_bam_io_base make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/depend +[ 39%] Built target demo_tutorial_sam_and_bam_io_example1 [ 39%] Built target demo_tutorial_realignment_step2 make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build.make demos/CMakeFiles/demo_dox_index_length_countSequences.dir/depend -make -f demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_length_countSequences.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment6.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/DependInfo.cmake --color= +[ 39%] Built target demo_tutorial_realignment_step1 +make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_solution1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build.make demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_exact.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 39%] Built target demo_tutorial_q_gram_index_index_assignment6 +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_realignment_step1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_matrix.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build.make demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build +make -f demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_in_depth_example_overflow.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 39%] Built target demo_unassigned_or_unused_tutorial_file_io_solution1 -[ 39%] Built target demo_tutorial_q_gram_index_index_assignment6 -[ 39%] Built target demo_tutorial_realignment_step1 -make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/depend +make -f demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build.make demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build +make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_length_countSequences.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 39%] Built target demo_tutorial_pattern_matching_find_exact -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/depend -[ 39%] Built target demo_tutorial_sequences_in_depth_example_overflow make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 39%] Built target demo_tutorial_sequences_in_depth_example_overflow make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/DependInfo.cmake --color= -[ 39%] Built target demo_dox_index_length_countSequences make -f demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/depend [ 39%] Built target demo_tutorial_alignment_scoring_scheme_matrix -[ 39%] Built target demo_tutorial_graph_graph_dijkstra make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph.dir/DependInfo.cmake --color= +[ 39%] Built target demo_tutorial_graph_graph_dijkstra +[ 39%] Built target demo_dox_index_length_countSequences make -f demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/depend make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_align_assignment1.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build +[ 39%] Built target demo_tutorial_alignment_align_assignment1 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_example_tempSubclassing.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 39%] Built target demo_tutorial_alignment_align_assignment1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_graph.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3_solution.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 39%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 39%] Built target demo_tutorial_vcf_io_base -[ 39%] Built target demo_tutorial_pattern_matching_assignment3_solution make -f demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build +[ 40%] Built target demo_tutorial_a_first_example_example_tempSubclassing make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 40%] Built target demo_tutorial_a_first_example_example_tempSubclassing -[ 39%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 -[ 41%] Built target demo_tutorial_sequence_io_solution4 make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build +make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build +[ 40%] Built target demo_tutorial_alignment_graph make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 40%] Built target demo_tutorial_vcf_io_base +[ 40%] Built target demo_tutorial_pattern_matching_assignment3_solution make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/DependInfo.cmake --color= -[ 41%] Built target demo_tutorial_alignment_graph -[ 41%] Built target demo_tutorial_generic_programming_template_subclassing +make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build +make -f demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/depend make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/depend -make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/depend +[ 40%] Built target demo_tutorial_generic_programming_template_subclassing +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/depend +[ 41%] Built target demo_tutorial_sequence_io_solution4 make -f demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/depend make -f demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build.make demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build -[ 41%] Built target demo_tutorial_sequence_io_solution1 -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build make -f demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 41%] Built target demo_tutorial_sequence_io_solution1 make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_msa.dir/build'. -make -f demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build.make demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build -[ 41%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base +[ 41%] Built target demo_tutorial_multiple_sequence_alignment_msa +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build +[ 41%] Built target demo_howto_filter_similar_sequences make -f demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_basic_code.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target demo_tutorial_multiple_sequence_alignment_msa +make -f demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build.make demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_final_result.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 41%] Built target demo_howto_filter_similar_sequences +[ 41%] Built target demo_tutorial_a_first_example_basic_code +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_bed_io_UNUSED_bed_stream_read.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 41%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base make -f demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make demos/CMakeFiles/demo_howto_scores_load_score.dir/depend -make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/depend +[ 43%] Built target demo_howto_efficiently_import_sequences make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_scores_load_score.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/depend +[ 43%] Built target demo_tutorial_a_first_example_final_result make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/DependInfo.cmake --color= +[ 43%] Built target demo_dox_bed_io_UNUSED_bed_stream_read make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/depend -[ 41%] Built target demo_tutorial_a_first_example_basic_code make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/DependInfo.cmake --color= -[ 41%] Built target demo_tutorial_a_first_example_final_result make -f demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/DependInfo.cmake --color= -[ 43%] Built target demo_howto_efficiently_import_sequences +make -f demos/CMakeFiles/demo_dox_sequence_string2.dir/build.make demos/CMakeFiles/demo_dox_sequence_string2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_sequence_string2.dir/build.make demos/CMakeFiles/demo_dox_sequence_string2.dir/depend -make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/depend -[ 43%] Built target demo_dox_bed_io_UNUSED_bed_stream_read make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make demos/CMakeFiles/demo_howto_scores_load_score.dir/build cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_scores_load_score.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build -make -f demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make demos/CMakeFiles/demo_howto_scores_load_score.dir/build +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_functionality1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_scores_load_score.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_sequence_string2.dir/build.make demos/CMakeFiles/demo_dox_sequence_string2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_UNUSED_modcomplementdna.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_sequence_string2.dir/build.make demos/CMakeFiles/demo_dox_sequence_string2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_string2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution3.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build [ 44%] Built target demo_tutorial_sequences_example_functionality1 [ 44%] Built target demo_howto_scores_load_score make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_UNUSED_prefix.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 44%] Built target demo_tutorial_iterators_assignment_3_workshop -make -f demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 44%] Built target demo_tutorial_modifiers_UNUSED_modcomplementdna +[ 44%] Built target demo_tutorial_gff_and_gtf_io_solution3 +make -f demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/depend make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/depend make -f demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/depend -[ 44%] Built target demo_tutorial_gff_and_gtf_io_solution3 -[ 44%] Built target demo_dox_sequence_string2 -make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 44%] Built target demo_tutorial_modifiers_UNUSED_modcomplementdna cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/DependInfo.cmake --color= +[ 45%] Built target demo_dox_sequence_UNUSED_prefix make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/DependInfo.cmake --color= -[ 45%] Built target demo_dox_sequence_UNUSED_prefix make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/depend -[ 46%] Built target demo_dox_statistics_build_markov_model +[ 44%] Built target demo_dox_sequence_string2 +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build +make -f demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment5_solution.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_statistics_build_markov_model.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment3.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_seeds_seeds_extension.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build +[ 45%] Built target demo_tutorial_journaled_set_solution_online_search_assignment3 +make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_parse_blastn.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_seeds_seeds_add_seed.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 45%] Built target demo_tutorial_parsing_command_line_arguments_assignment5_solution make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 46%] Built target demo_unassigned_or_unused_tutorials_custim_io_parse_blastn make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build -[ 46%] Built target demo_tutorial_parsing_command_line_arguments_assignment5_solution +[ 47%] Built target demo_dox_statistics_build_markov_model +make -f demos/CMakeFiles/demo_dox_sequence_stringset.dir/build.make demos/CMakeFiles/demo_dox_sequence_stringset.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 47%] Built target demo_dox_seeds_seeds_extension +[ 47%] Built target demo_dox_seeds_seeds_add_seed +make -f demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 46%] Built target demo_dox_seeds_seeds_extension -make -f demos/CMakeFiles/demo_dox_sequence_stringset.dir/build.make demos/CMakeFiles/demo_dox_sequence_stringset.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_stringset.dir/DependInfo.cmake --color= +[ 47%] Built target demo_tutorial_a_first_example_solution_3 make -f demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build.make demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/depend -[ 46%] Built target demo_tutorial_basics_show_alphabets -[ 46%] Built target demo_tutorial_journaled_set_solution_online_search_assignment3 +make -f demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build.make demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/DependInfo.cmake --color= -[ 47%] Built target demo_unassigned_or_unused_tutorials_custim_io_parse_blastn -make -f demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build.make demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/depend -[ 47%] Built target demo_tutorial_seed_and_extend_solution3 -[ 47%] Built target demo_dox_seeds_seeds_add_seed make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_queue_example.dir/depend cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/DependInfo.cmake --color= -[ 47%] Built target demo_tutorial_a_first_example_solution_3 +make -f demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_queue_example.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_parallel_queue_example.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_sequence_stringset.dir/build.make demos/CMakeFiles/demo_dox_sequence_stringset.dir/build make -f demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_parallel_queue_example.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_stringset.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_sequence_stringset.dir/build.make demos/CMakeFiles/demo_dox_sequence_stringset.dir/build +[ 47%] Built target demo_tutorial_seed_and_extend_solution3 make -f demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_stringset.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build.make demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 47%] Built target demo_tutorial_basics_show_alphabets make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build.make demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_pipe_pool_sorter.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/depend -[ 47%] Built target demo_dox_sequence_stringset -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/depend +make -f demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build.make demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 47%] Built target demo_dox_sequence_container_view_zip -make -f demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build -make -f demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build.make demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_parallel_queue_example.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_container_view_zip.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 47%] Built target demo_dox_sequence_stringset make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build -[ 47%] Built target demo_dox_pipe_pool_sorter +make -f demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_modified_string_mod_view.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/depend +make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/depend +[ 47%] Built target demo_dox_pipe_pool_sorter +make -f demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build.make demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/DependInfo.cmake --color= +[ 47%] Built target demo_dox_parallel_queue_example +[ 47%] Built target demo_dox_sequence_container_view_zip +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/depend -[ 47%] Built target demo_dox_modifier_modified_string_mod_view -[ 48%] Built target demo_tutorial_a_first_example_base +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build -[ 48%] Built target demo_dox_parallel_queue_example -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build +[ 48%] Built target demo_tutorial_a_first_example_base make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_cyclic_shape_snippets.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 48%] Built target demo_dox_modifier_modified_string_mod_view +make -f demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/depend +make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/DependInfo.cmake --color= +[ 49%] Built target demo_dox_modifier_modified_string +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build +[ 49%] Built target demo_dox_modifier_cyclic_shape_snippets +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_modified_string.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build.make demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_align_graph_align.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/depend -[ 48%] Built target demo_dox_modifier_cyclic_shape_snippets -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_supermaxrepeats.dir/build'. +make -f demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 49%] Built target demo_dox_modifier_modified_string -make -f demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/depend +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/depend -[ 50%] Built target demo_dox_graph_align_graph_align -[ 49%] Built target demo_tutorial_seed_and_extend_example7 +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/depend +[ 49%] Built target demo_tutorial_seed_and_extend_example7 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/depend +[ 49%] Built target demo_dox_index_supermaxrepeats make -f demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build.make demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/DependInfo.cmake --color= +[ 49%] Built target demo_tutorial_gff_and_gtf_io_example2 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/DependInfo.cmake --color= -[ 50%] Built target demo_dox_index_supermaxrepeats +[ 49%] Built target demo_dox_consensus_consensus_alignment make -f demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build.make demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example2.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build.make demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_soft_to_hard_masking.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build +[ 50%] Built target demo_dox_graph_align_graph_align +[ 50%] Built target demo_unassigned_or_unused_soft_to_hard_masking +make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/depend +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_example1.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build.make demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_misc_enumerate_strings.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 50%] Built target demo_tutorial_gff_and_gtf_io_example1 +make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_consensus_consensus_alignment.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 50%] Built target demo_tutorial_gff_and_gtf_io_example2 -[ 50%] Built target demo_dox_consensus_consensus_alignment +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build.make demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_example_functionality.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_cyclic_shape.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 51%] Built target demo_dox_misc_enumerate_strings make -f demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build.make demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build -[ 50%] Built target demo_unassigned_or_unused_soft_to_hard_masking -[ 50%] Built target demo_tutorial_gff_and_gtf_io_example1 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_stream_lexical_cast.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 50%] Built target demo_dox_modifier_cyclic_shape -make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/depend -[ 51%] Built target demo_dox_misc_enumerate_strings +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/depend -[ 52%] Built target demo_tutorial_string_sets_example_functionality -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/depend +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/depend +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/DependInfo.cmake --color= -[ 52%] Built target demo_dox_stream_lexical_cast +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 52%] Built target demo_tutorial_string_sets_example_functionality +[ 52%] Built target demo_dox_modifier_cyclic_shape +[ 52%] Built target demo_tutorial_graph_graph_algo_scc make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/depend +[ 52%] Built target demo_tutorial_index_iterators_index_preorder +[ 52%] Built target demo_dox_stream_lexical_cast +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/depend +[ 52%] Built target demo_tutorial_alignment_scoring_scheme_affine_dgs make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make demos/CMakeFiles/demo_tutorial_basics_allocator.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make demos/CMakeFiles/demo_tutorial_basics_allocator.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build.make demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/depend +[ 52%] Built target demo_tutorial_simple_rna_seq_genequant_assignment5 +make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/depend +make -f demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build.make demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build +make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_preorder.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_UNUSED_infix.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build +[ 52%] Built target demo_tutorial_a_first_example_solution_5 +make -f demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment5.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build.make demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_affine_dgs.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build.make demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_5.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build.make demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_parallel_splitter_example.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Built target demo_tutorial_graph_graph_algo_scc [ 52%] Built target demo_dox_sequence_UNUSED_infix -[ 52%] Built target demo_tutorial_index_iterators_index_preorder -[ 52%] Built target demo_tutorial_simple_rna_seq_genequant_assignment5 -make -f demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build.make demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/depend -[ 52%] Built target demo_tutorial_a_first_example_solution_5 -[ 52%] Built target demo_tutorial_alignment_scoring_scheme_affine_dgs -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/depend [ 52%] Built target demo_dox_parallel_splitter_example -make -f demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build.make demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/depend -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/DependInfo.cmake --color= +[ 52%] Built target demo_tutorial_basics_allocator +[ 52%] Built target demo_dox_seq_io_fai_index_example make -f demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/DependInfo.cmake --color= +[ 52%] Built target demo_tutorial_indexed_fasta_io_solution2 +[ 52%] Built target demo_dox_index_shape_hash_init make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/DependInfo.cmake --color= +[ 52%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 make -f demos/CMakeFiles/demo_dox_index_node_predicate.dir/build.make demos/CMakeFiles/demo_dox_index_node_predicate.dir/depend -[ 52%] Built target demo_tutorial_basics_allocator make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_node_predicate.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build.make demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build +make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_shape_hash_init.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Built target demo_unassigned_or_unused_seeds -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/depend -make -f demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build.make demos/CMakeFiles/demo_dox_seq_io_fai_index_example.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg 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/build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_node_predicate.dir/build.make demos/CMakeFiles/demo_dox_index_node_predicate.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_node_predicate.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution2.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_node_predicate.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_seeds.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_genequant_assignment2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 52%] Built target demo_dox_index_shape_hash_init -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_3_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_mums.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_mums.dir/build.make demos/CMakeFiles/demo_dox_index_mums.dir/build -[ 52%] Built target demo_dox_seq_io_fai_index_example -make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/depend -[ 53%] Built target demo_dox_index_node_predicate -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_mums.dir/build'. +make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_tutorial_simple_rna_seq_genequant_assignment2 -[ 53%] Built target demo_tutorial_indexed_fasta_io_solution2 -[ 53%] Built target demo_tutorial_sequences_assignment_3_solution -make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/depend +make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/depend +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build +[ 52%] Built target demo_unassigned_or_unused_seeds +[ 53%] Built target demo_dox_index_node_predicate make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Built target demo_dox_index_mums make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/depend make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/DependInfo.cmake --color= -[ 53%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Built target demo_tutorial_simple_rna_seq_genequant_assignment2 make -f demos/CMakeFiles/demo_dox_basic_enable_if.dir/build.make demos/CMakeFiles/demo_dox_basic_enable_if.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_enable_if.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/DependInfo.cmake --color= -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_enable_if.dir/DependInfo.cmake --color= -[ 53%] Built target demo_dox_index_mums +[ 53%] Built target demo_tutorial_sequences_assignment_3_solution +[ 53%] Built target demo_tutorial_a_first_example_basic_code_detailed +[ 53%] Built target demo_tutorial_file_io_overview_solution1 make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build -[ 53%] Built target demo_dox_graph_algorithms_all_pairs_shortest_path -make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_example1.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_basic_code_detailed.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_basic_enable_if.dir/build.make demos/CMakeFiles/demo_dox_basic_enable_if.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_solution1.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_final_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_enable_if.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_unassigned_or_unused_filter_sam -[ 53%] Built target demo_tutorial_bed_io_example1 -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/depend -make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/DependInfo.cmake --color= +[ 53%] Built target demo_tutorial_bed_io_example1 make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_store_store_example.dir/DependInfo.cmake --color= -[ 53%] Built target demo_tutorial_file_io_overview_solution1 -make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/DependInfo.cmake --color= -[ 53%] Built target demo_tutorial_parsing_command_line_arguments_final_solution -[ 53%] Built target demo_tutorial_a_first_example_basic_code_detailed -make -f demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/depend -make -f demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/DependInfo.cmake --color= -[ 53%] Built target demo_dox_basic_enable_if make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/depend +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_basic_enable_if.dir/build.make demos/CMakeFiles/demo_dox_basic_enable_if.dir/build +[ 53%] Built target demo_tutorial_parsing_command_line_arguments_final_solution make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/DependInfo.cmake --color= -[ 53%] Built target demo_tutorial_seed_and_extend_solution1 -make -f demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_maxrepeats.dir/depend +make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_enable_if.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/build -make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_store_store_example.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_all_pairs_shortest_path.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_maxrepeats.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_filter_sam.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build'. +[ 53%] Built target demo_dox_basic_enable_if +[ 53%] Built target demo_tutorial_seed_and_extend_solution1 make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build.make demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build +[ 53%] Built target demo_unassigned_or_unused_filter_sam +make -f demos/CMakeFiles/demo_dox_store_store_example.dir/build.make demos/CMakeFiles/demo_dox_store_store_example.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_misc_interval_tree_example.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_dox_store_store_example -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_dox_graph_algorithms_dag_shortest_path -make -f demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build +make -f demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_dag_shortest_path.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_store_store_example.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Built target demo_dox_graph_algorithms_all_pairs_shortest_path +make -f demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/depend +make -f demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/depend +make -f demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/depend [ 53%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised -make -f demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_maxrepeats.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_dox_misc_interval_tree_example +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/depend +[ 53%] Built target demo_dox_misc_interval_tree_example make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_online.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_maxrepeats.dir/DependInfo.cmake --color= +[ 53%] Built target demo_dox_graph_algorithms_dag_shortest_path make -f demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build.make demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/depend -[ 53%] Built target demo_unassigned_or_unused_gff2gtf make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_finder.dir/DependInfo.cmake --color= -[ 53%] Built target demo_dox_bam_io_bam_tags_dict -make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Built target demo_dox_store_store_example cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/DependInfo.cmake --color= -[ 53%] Built target demo_dox_index_maxrepeats +make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/depend -[ 53%] Built target demo_tutorial_a_first_example_code_encapsulation -make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build'. +make -f demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build.make demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_maxrepeats.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_code_encapsulation.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/build +make -f demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_gff2gtf.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_find_finder_online.dir/build.make demos/CMakeFiles/demo_dox_find_finder_online.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_finder.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_bam_io_bam_tags_dict.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build.make demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_finder.dir/build.make demos/CMakeFiles/demo_dox_index_finder.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_find_finder_online.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_dox_align_extend_extend_alignment make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_math.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_finder.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build -make -f demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build +make -f demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build.make demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_begin_range_goDown_representative_repLength.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 53%] Built target demo_dox_index_maxrepeats +[ 53%] Built target demo_tutorial_a_first_example_code_encapsulation +[ 53%] Built target demo_unassigned_or_unused_gff2gtf +make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/depend +[ 53%] Built target demo_dox_bam_io_bam_tags_dict +[ 53%] Built target demo_dox_find_finder_online +make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/depend +make -f demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 53%] Built target demo_dox_index_begin_range_goDown_representative_repLength +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/DependInfo.cmake --color= +[ 53%] Built target demo_dox_index_finder make -f demos/CMakeFiles/demo_dox_align_integrate_align.dir/build.make demos/CMakeFiles/demo_dox_align_integrate_align.dir/depend [ 53%] Built target demo_dox_basic_metaprogramming_math -[ 53%] Built target demo_dox_find_finder_online +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_integrate_align.dir/DependInfo.cmake --color= -[ 53%] Built target demo_dox_modifier_modified_string_nested -[ 54%] Built target demo_tutorial_a_first_example_solution_4_templateSubclassing make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/DependInfo.cmake --color= -[ 54%] Built target demo_dox_index_finder make -f demos/CMakeFiles/demo_dox_index_iterator_short.dir/build.make demos/CMakeFiles/demo_dox_index_iterator_short.dir/depend -[ 54%] Built target demo_dox_graph_algorithms_kruskals_algorithm +[ 53%] Built target demo_dox_index_begin_range_goDown_representative_repLength make -f demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build.make demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator_short.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_4_templateSubclassing.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_align_integrate_align.dir/build.make demos/CMakeFiles/demo_dox_align_integrate_align.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build.make demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/depend +make -f demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build.make demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build +make -f demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_modifier_modified_string_nested.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_align_integrate_align.dir/build.make demos/CMakeFiles/demo_dox_align_integrate_align.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_integrate_align.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_kruskals_algorithm.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_extend_extend_alignment.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 54%] Built target demo_tutorial_a_first_example_solution_4_templateSubclassing +make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build make -f demos/CMakeFiles/demo_dox_index_iterator_short.dir/build.make demos/CMakeFiles/demo_dox_index_iterator_short.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_iterator_short.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 54%] Built target demo_dox_basic_zip_iterator +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_integrate_align.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_4.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build +make -f demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build.make demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_zip_iterator.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_iterator_short.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 54%] Built target demo_dox_modifier_modified_string_nested +[ 54%] Built target demo_dox_align_extend_extend_alignment +make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/depend +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/depend +make -f demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/DependInfo.cmake --color= [ 54%] Built target demo_dox_align_integrate_align -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/depend -make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/depend +[ 54%] Built target demo_dox_graph_algorithms_kruskals_algorithm +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/DependInfo.cmake --color= +[ 54%] Built target demo_dox_basic_zip_iterator +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/depend [ 54%] Built target demo_tutorial_a_first_example_solution_4 -[ 54%] Built target demo_dox_graph_types_graph_algo_dijkstra +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/DependInfo.cmake --color= -[ 54%] Built target demo_tutorial_iterators_assignment_4_workshop_solution -[ 54%] Built target demo_dox_index_iterator_short +make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/depend make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/depend +[ 54%] Built target demo_dox_index_iterator_short +make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/depend -make -f demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/DependInfo.cmake --color= -[ 54%] Built target demo_tutorial_genome_annotations_assignment_2_solution -[ 55%] Built target demo_tutorial_gff_and_gtf_io_solution1 -make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build +make -f demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_types_graph_algo_dijkstra.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_4_workshop_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build -[ 55%] Built target demo_dox_basic_metaprogramming_logic -[ 55%] Built target demo_tutorial_pattern_matching_assignment2 make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 56%] Built target demo_tutorial_journaled_set_example_journal_string_basic +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_journal_string_basic.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build +make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_2_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 54%] Built target demo_tutorial_pattern_matching_assignment2 +[ 54%] Built target demo_dox_graph_types_graph_algo_dijkstra +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_6.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build +make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_logic.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/depend +make -f demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/depend +[ 54%] Built target demo_tutorial_iterators_assignment_4_workshop_solution +[ 54%] Built target demo_tutorial_genome_annotations_assignment_2_solution +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/DependInfo.cmake --color= +[ 55%] Built target demo_tutorial_gff_and_gtf_io_solution1 +make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/depend +[ 56%] Built target demo_tutorial_journaled_set_example_journal_string_basic +make -f demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/depend +[ 56%] Built target demo_dox_basic_metaprogramming_logic +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/depend +[ 56%] Built target demo_tutorial_a_first_example_solution_6 +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_alignment_align.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align.dir/depend make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/DependInfo.cmake --color= -[ 56%] Built target demo_tutorial_a_first_example_solution_6 -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_align.dir/DependInfo.cmake --color= -[ 56%] Built target demo_tutorial_genome_annotations_base -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/depend -[ 56%] Built target demo_dox_basic_metaprogramming_control -make -f demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build.make demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/depend -[ 56%] Built target demo_dox_graph_algorithms_transitive_closure -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/DependInfo.cmake --color= -[ 56%] Built target demo_tutorial_a_first_example_solution_1 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/depend +make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_score_score.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build +make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build +make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_control.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_transitive_closure.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_score_score.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_base.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_alignment_align.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_align.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_align.dir/build'. -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_prims_algorithm.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 56%] Built target demo_tutorial_sequences_assignment_4_solution +make -f demos/CMakeFiles/demo_dox_score_score.dir/build.make demos/CMakeFiles/demo_dox_score_score.dir/build +[ 56%] Built target demo_tutorial_genome_annotations_base +[ 56%] Built target demo_dox_basic_metaprogramming_control +make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_align.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build +[ 56%] Built target demo_tutorial_a_first_example_solution_1 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_score_score.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/depend -[ 58%] Built target demo_dox_score_score +[ 56%] Built target demo_dox_graph_algorithms_transitive_closure +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_4_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 58%] Built target demo_dox_graph_algorithms_prims_algorithm -make -f demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build.make demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build +make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/depend +make -f demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build.make demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/depend +make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/DependInfo.cmake --color= +[ 56%] Built target demo_dox_graph_algorithms_prims_algorithm +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/DependInfo.cmake --color= +[ 56%] Built target demo_tutorial_alignment_align +make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/depend make -f demos/CMakeFiles/demo_dox_index_mummy.dir/build.make demos/CMakeFiles/demo_dox_index_mummy.dir/depend -[ 58%] Built target demo_howto_align_gaps_clipping make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_mummy.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/depend -[ 58%] Built target demo_tutorial_alignment_align -[ 58%] Built target demo_dox_index_UNUSED_shape +[ 58%] Built target demo_dox_score_score make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_mummy.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/depend +[ 58%] Built target demo_tutorial_sequences_assignment_4_solution make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/depend -make -f demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build.make demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/depend +make -f demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build.make demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build.make demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build.make demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_align_gaps_clipping.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_mummy.dir/build.make demos/CMakeFiles/demo_dox_index_mummy.dir/build -make -f demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/depend +make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_mummy.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_find_finder_aho_corasick.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_UNUSED_shape.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build.make demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_misc_name_store_cache.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/DependInfo.cmake --color= +[ 58%] Built target demo_howto_align_gaps_clipping +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 58%] Built target demo_dox_find_finder_aho_corasick +make -f demos/CMakeFiles/demo_dox_index_mummy.dir/build.make demos/CMakeFiles/demo_dox_index_mummy.dir/build +[ 58%] Built target demo_dox_index_UNUSED_shape +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram_hash.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build +[ 58%] Built target demo_dox_misc_name_store_cache +make -f demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_depth_first_search.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_mummy.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 58%] Built target demo_tutorial_q_gram_index_index_qgram_hash -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 58%] Built target demo_dox_index_mummy -make -f demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build -make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_dijkstra.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 58%] Built target demo_dox_index_mummy +[ 58%] Built target demo_tutorial_q_gram_index_index_qgram_hash +make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/depend +make -f demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 58%] Built target demo_dox_misc_name_store_cache +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/DependInfo.cmake --color= +[ 58%] Built target demo_dox_graph_algorithms_dijkstra +[ 59%] Built target demo_dox_graph_algorithms_depth_first_search +make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/depend -[ 59%] Built target demo_dox_graph_algorithms_depth_first_search -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/DependInfo.cmake --color= -[ 59%] Built target demo_dox_graph_algorithms_dijkstra make -f demos/CMakeFiles/demo_dox_sequence_string.dir/build.make demos/CMakeFiles/demo_dox_sequence_string.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_string.dir/DependInfo.cmake --color= -[ 60%] Built target demo_unassigned_or_unused_index_find_stringset make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build -make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build +make -f demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build +make -f demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build.make demos/CMakeFiles/demo_howto_using_zip_iterator.dir/depend +make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_find_stringset.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_global_alignment_unbanded.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build.make demos/CMakeFiles/demo_howto_using_zip_iterator.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_using_zip_iterator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 61%] Built target demo_dox_align_global_alignment_unbanded make -f demos/CMakeFiles/demo_dox_sequence_string.dir/build.make demos/CMakeFiles/demo_dox_sequence_string.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_using_zip_iterator.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_string.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 61%] Built target demo_tutorial_vcf_io_solution1 make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build.make demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_align.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_solution1.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build -[ 62%] Built target demo_blast_blast_in_lowlevel -make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_rooted_iterator.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_blast_blast_in_lowlevel.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 60%] Built target demo_dox_align_global_alignment_unbanded +[ 61%] Built target demo_unassigned_or_unused_index_find_stringset +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build.make demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build -make -f demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/depend +[ 61%] Built target demo_dox_sequence_string +make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_using_zip_iterator.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 62%] Built target demo_unassigned_or_unused_rooted_iterator +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_align.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/DependInfo.cmake --color= -[ 62%] Built target demo_dox_sequence_string +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/DependInfo.cmake --color= +[ 61%] Built target demo_tutorial_vcf_io_solution1 +make -f demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/depend make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 61%] Built target demo_unassigned_or_unused_rooted_iterator make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 62%] Built target demo_blast_blast_in_lowlevel +make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_align_align.dir/build.make demos/CMakeFiles/demo_dox_align_align.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_align.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 62%] Built target demo_howto_using_zip_iterator -make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 63%] Built target demo_tutorial_indices_find2_index_approx -make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/DependInfo.cmake --color= +[ 62%] Built target demo_howto_using_zip_iterator +make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build +make -f demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build +[ 62%] Built target demo_dox_align_align make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/depend -[ 63%] Built target demo_dox_align_align make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_annotation_converter.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 63%] Built target demo_unassigned_or_unused_annotation_converter -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_index_find_repeats.dir/build.make demos/CMakeFiles/demo_dox_index_find_repeats.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build.make demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build.make demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build -[ 63%] Built target demo_tutorial_string_sets_assignment_4_workshop_solution -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_find_repeats.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_simple_type_construction.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/depend -make -f demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/DependInfo.cmake --color= -[ 63%] Built target demo_dox_align_profile_profile_seq_score +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_profile_profile_seq_score.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_find2_index_approx.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build -[ 63%] Built target demo_dox_basic_simple_type_construction make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build -make -f demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 62%] Built target demo_unassigned_or_unused_annotation_converter +make -f demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build.make demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_assignment_1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_compute_alignment_stats.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_sufarray.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_find_repeats.dir/build.make demos/CMakeFiles/demo_dox_index_find_repeats.dir/build -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 62%] Built target demo_dox_align_profile_profile_seq_score +[ 63%] Built target demo_tutorial_indices_find2_index_approx +make -f demos/CMakeFiles/demo_dox_index_find_repeats.dir/build.make demos/CMakeFiles/demo_dox_index_find_repeats.dir/depend +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/depend +[ 63%] Built target demo_dox_basic_simple_type_construction +make -f demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_find_repeats.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 63%] Built target demo_dox_align_compute_alignment_stats +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_find_repeats.dir/DependInfo.cmake --color= +[ 63%] Built target demo_tutorial_string_sets_assignment_4_workshop_solution make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/DependInfo.cmake --color= [ 63%] Built target demo_tutorial_indices_assignment_1 +make -f demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build.make demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/depend +[ 63%] Built target demo_unassigned_or_unused_index_sufarray make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/depend -[ 63%] Built target demo_unassigned_or_unused_index_sufarray -[ 63%] Built target demo_dox_index_find_repeats -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/depend +[ 63%] Built target demo_dox_align_compute_alignment_stats make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 63%] Built target demo_dox_graph_algorithms_heaviest_increasing_subsequence +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/DependInfo.cmake --color= -[ 64%] Built target demo_tutorial_parsing_command_line_arguments_assignment2_solution +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build.make demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build -[ 64%] Built target demo_dox_statistics_load_markov_model -make -f demos/CMakeFiles/demo_dox_index_counting.dir/build.make demos/CMakeFiles/demo_dox_index_counting.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build'. +make -f demos/CMakeFiles/demo_dox_index_find_repeats.dir/build.make demos/CMakeFiles/demo_dox_index_find_repeats.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_counting.dir/DependInfo.cmake --color= -[ 64%] Built target demo_tutorial_basic_techniques_base -make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/depend -make -f demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/depend -make -f demos/CMakeFiles/demo_tutorial_indices_base.dir/build.make demos/CMakeFiles/demo_tutorial_indices_base.dir/depend -make -f demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_base.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_heaviest_increasing_subsequence.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build +make -f demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build.make demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_find_repeats.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basic_techniques_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment2_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 64%] Built target demo_tutorial_sam_and_bam_io_example7 make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_counting.dir/build.make demos/CMakeFiles/demo_dox_index_counting.dir/build +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_counting.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build +make -f demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build.make demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build +[ 63%] Built target demo_dox_graph_algorithms_heaviest_increasing_subsequence +make -f demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build.make demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 64%] Built target demo_tutorial_journaled_set_example_join make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_indices_base.dir/build.make demos/CMakeFiles/demo_tutorial_indices_base.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build +make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_base.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_statistics_load_markov_model.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build +[ 63%] Built target demo_dox_index_find_repeats make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sam_and_bam_io_example7.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_join.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 64%] Built target demo_tutorial_parsing_command_line_arguments_assignment2_solution +[ 64%] Built target demo_tutorial_basic_techniques_base +make -f demos/CMakeFiles/demo_dox_index_counting.dir/build.make demos/CMakeFiles/demo_dox_index_counting.dir/depend [ 64%] Built target demo_tutorial_parsing_command_line_arguments_base -[ 65%] Built target demo_dox_index_counting -[ 65%] Built target demo_dox_bam_io_bam_file_in +make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_counting.dir/DependInfo.cmake --color= +[ 64%] Built target demo_dox_statistics_load_markov_model +[ 64%] Built target demo_tutorial_sam_and_bam_io_example7 +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/DependInfo.cmake --color= +[ 64%] Built target demo_tutorial_journaled_set_example_join +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_indices_base.dir/build.make demos/CMakeFiles/demo_tutorial_indices_base.dir/depend +make -f demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_base.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make demos/CMakeFiles/demo_tutorial_basics_strings.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/DependInfo.cmake --color= -[ 65%] Built target demo_dox_graph_algorithms_breadth_first_search -[ 65%] Built target demo_tutorial_indices_base make -f demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_base.dir/depend -[ 65%] Built target demo_unassigned_or_unused_benchmark_stream_write -make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_strings.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_base.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_counting.dir/build.make demos/CMakeFiles/demo_dox_index_counting.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build +make -f demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build.make demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_counting.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build make -f demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make demos/CMakeFiles/demo_tutorial_basics_strings.dir/build -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_strings.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_strings.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_bam_io_bam_file_in.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_benchmark_stream_write.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build -make -f demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build.make demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_breadth_first_search.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build +make -f demos/CMakeFiles/demo_tutorial_indices_base.dir/build.make demos/CMakeFiles/demo_tutorial_indices_base.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_floyd_warshall_algorithm.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build -make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build +make -f demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build +[ 64%] Built target demo_dox_index_counting make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 65%] Built target demo_dox_graph_algorithms_floyd_warshall_algorithm +[ 65%] Built target demo_dox_bam_io_bam_file_in +make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/depend +make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/depend +[ 65%] Built target demo_unassigned_or_unused_benchmark_stream_write +make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/DependInfo.cmake --color= +[ 65%] Built target demo_dox_graph_algorithms_breadth_first_search [ 65%] Built target demo_tutorial_basics_strings +make -f demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build.make demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build.make demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/depend +[ 65%] Built target demo_dox_graph_algorithms_floyd_warshall_algorithm +[ 65%] Built target demo_tutorial_indices_base make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/DependInfo.cmake --color= -[ 65%] Built target demo_tutorial_sequence_io_solution2 -[ 65%] Built target demo_dox_sequence_UNUSED_suffix [ 65%] Built target demo_tutorial_bed_io_base make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/depend +make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/DependInfo.cmake --color= -[ 65%] Built target demo_dox_misc_get_terminal_size -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/depend -[ 66%] Built target demo_tutorial_indexed_fasta_io_base make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/depend +make -f demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build.make demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_misc_get_terminal_size.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build.make demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_UNUSED_suffix.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build -make -f demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build.make demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/depend +make -f demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_solution2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 67%] Built target demo_dox_graph_algorithms_longest_common_subsequence -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indexed_fasta_io_base.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 65%] Built target demo_dox_misc_get_terminal_size +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build +[ 65%] Built target demo_dox_sequence_UNUSED_suffix +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_longest_common_subsequence.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 67%] Built target demo_tutorial_pattern_matching_find_index make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_longest_increasing_subsequence.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build -[ 67%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step2 -make -f demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build.make demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build +[ 65%] Built target demo_tutorial_file_io_overview_solution2 +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/depend +[ 65%] Built target demo_tutorial_sequence_io_solution2 +[ 66%] Built target demo_tutorial_indexed_fasta_io_base make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 67%] Built target demo_tutorial_file_io_overview_solution2 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/depend +make -f demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/DependInfo.cmake --color= +[ 67%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step2 +[ 67%] Built target demo_dox_graph_algorithms_longest_common_subsequence +make -f demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build.make demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/depend +[ 67%] Built target demo_dox_graph_algorithms_longest_increasing_subsequence +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/depend -[ 67%] Built target demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats -make -f demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/depend -make -f demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/depend cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/depend +make -f demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/DependInfo.cmake --color= -[ 67%] Built target demo_dox_graph_algorithms_longest_increasing_subsequence -make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/depend -[ 68%] Built target demo_tutorial_alignment_graph_assignment1 -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/DependInfo.cmake --color= -[ 68%] Built target demo_tabix_io_tabix_vcf -make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_base.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_base.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build'. +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build'. +make -f demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build.make demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build +make -f demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_index.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tabix_io_tabix_vcf.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 67%] Built target demo_unassigned_or_unused_tutorial_file_io_stream_compression_formats +make -f demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_graph_assignment1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build +make -f demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_ford_fulkerson_algorithm.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_solution2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build +make -f demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_strongly_connected_components.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_topological_sort.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 67%] Built target demo_tutorial_pattern_matching_find_index +[ 67%] Built target demo_tabix_io_tabix_vcf +[ 68%] Built target demo_tutorial_alignment_graph_assignment1 [ 68%] Built target demo_dox_graph_algorithms_ford_fulkerson_algorithm -make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/depend +make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/depend +make -f demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/DependInfo.cmake --color= +[ 68%] Built target demo_dox_graph_algorithms_strongly_connected_components [ 69%] Built target demo_tutorial_bed_io_solution2 +make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_base.dir/depend +make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_base.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/depend -[ 69%] Built target demo_tutorial_string_sets_base +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/DependInfo.cmake --color= -[ 69%] Built target demo_dox_graph_algorithms_strongly_connected_components +[ 69%] Built target demo_dox_graph_algorithms_topological_sort +make -f demos/CMakeFiles/demo_howto_custom_file_endings.dir/build.make demos/CMakeFiles/demo_howto_custom_file_endings.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_custom_file_endings.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_example_tags.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 69%] Built target demo_dox_align_split_split_alignment -make -f demos/CMakeFiles/demo_howto_custom_file_endings.dir/build.make demos/CMakeFiles/demo_howto_custom_file_endings.dir/depend -make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_custom_file_endings.dir/DependInfo.cmake --color= -[ 69%] Built target demo_tutorial_seed_and_extend_example2 -[ 70%] Built target demo_dox_index_begin_atEnd_representative_bottomUp make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build -[ 70%] Built target demo_dox_graph_algorithms_topological_sort -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/depend -make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build'. +make -f demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build.make demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 70%] Built target demo_tutorial_a_first_example_example_tags +make -f demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/depend +[ 69%] Built target demo_tutorial_a_first_example_example_tags +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_split_split_alignment.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_base.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_howto_custom_file_endings.dir/build.make demos/CMakeFiles/demo_howto_custom_file_endings.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 70%] Built target demo_dox_index_UNUSED_shape_hash make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_custom_file_endings.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build +make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/build +make -f demos/CMakeFiles/demo_howto_custom_file_endings.dir/build.make demos/CMakeFiles/demo_howto_custom_file_endings.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_begin_atEnd_representative_bottomUp.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 69%] Built target demo_dox_align_split_split_alignment make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_open_save.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_custom_file_endings.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build +[ 69%] Built target demo_tutorial_seed_and_extend_example2 +[ 69%] Built target demo_tutorial_string_sets_base +make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/depend +make -f demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/depend +[ 69%] Built target demo_tutorial_index_iterators_iterator_solution1 +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/depend +[ 69%] Built target demo_dox_index_UNUSED_shape_hash +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_open_save.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/depend -[ 70%] Built target demo_unassigned_or_unused_graph_hmm_silent -[ 70%] Built target demo_dox_index_begin_atEnd_representative -[ 70%] Built target demo_tutorial_index_iterators_iterator_solution1 +[ 70%] Built target demo_dox_index_begin_atEnd_representative_bottomUp make -f demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build.make demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/depend -[ 70%] Built target demo_howto_custom_file_endings make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/DependInfo.cmake --color= -[ 70%] Built target demo_dox_index_open_save make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_index_iterator.dir/build.make demos/CMakeFiles/demo_dox_index_iterator.dir/depend -make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 70%] Built target demo_howto_custom_file_endings make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/DependInfo.cmake --color= -[ 72%] Built target demo_tutorial_iterators_assignment_3_workshop_solution -make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build.make demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build +make -f demos/CMakeFiles/demo_dox_index_iterator.dir/build.make demos/CMakeFiles/demo_dox_index_iterator.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_iterator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_graph_hmm_silent.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_iterator.dir/build.make demos/CMakeFiles/demo_dox_index_iterator.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build.make demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_iterator.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_begin_atEnd_representative.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build +make -f demos/CMakeFiles/demo_dox_index_open_save.dir/build.make demos/CMakeFiles/demo_dox_index_open_save.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_3_workshop_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build.make demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_open_save.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 70%] Built target demo_unassigned_or_unused_graph_hmm_silent make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_getOccurrences_getFrequency_range_getFibre.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build'. +make -f demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build.make demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build +[ 70%] Built target demo_dox_index_begin_atEnd_representative make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build -make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_property_maps.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_iterator.dir/build.make demos/CMakeFiles/demo_dox_index_iterator.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_iterator.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_profile_profile_seq_frac_score.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 70%] Built target demo_dox_index_getOccurrences_getFrequency_range_getFibre +[ 70%] Built target demo_dox_index_open_save +[ 72%] Built target demo_tutorial_iterators_assignment_3_workshop_solution +make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/depend +[ 72%] Built target demo_dox_align_profile_profile_seq_frac_score [ 72%] Built target demo_tutorial_index_iterators_index_property_maps -[ 73%] Built target demo_dox_index_iterator -[ 74%] Built target demo_dox_basic_metaprogramming_switch +make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/depend make -f demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/depend -make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/depend -[ 74%] Built target demo_tutorial_string_sets_example_iterators +[ 73%] Built target demo_dox_index_iterator +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/DependInfo.cmake --color= -[ 74%] Built target demo_tutorial_indexed_fasta_io_solution1 -[ 74%] Built target demo_dox_index_getOccurrences_getFrequency_range_getFibre -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/DependInfo.cmake --color= -[ 74%] Built target demo_dox_align_profile_profile_seq_frac_score -[ 74%] Built target demo_tutorial_alphabets_assignment_1_solution -make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build.make demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build.make demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/depend -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_string_sets_example_iterators.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build.make demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/depend +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_basic_metaprogramming_switch.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build +make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indexed_fasta_io_solution1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build make -f demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_example_bitsPerValue.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_assignment_1_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_blast_io_read_assignment.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build -make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_solution_2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 75%] Built target demo_tutorial_alphabets_example_bitsPerValue -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 74%] Built target demo_dox_basic_metaprogramming_switch +[ 74%] Built target demo_tutorial_string_sets_example_iterators +[ 74%] Built target demo_tutorial_indexed_fasta_io_solution1 +make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/depend +make -f demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build.make demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/DependInfo.cmake --color= +[ 74%] Built target demo_tutorial_alphabets_assignment_1_solution +[ 75%] Built target demo_tutorial_alphabets_example_bitsPerValue make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build.make demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/depend [ 75%] Built target demo_tutorial_a_first_example_solution_2 -[ 75%] Built target demo_tutorial_blast_io_read_assignment -[ 75%] Built target demo_tutorial_seed_and_extend_solution4 -make -f demos/CMakeFiles/demo_tutorial_basics_base.dir/build.make demos/CMakeFiles/demo_tutorial_basics_base.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_base.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_basics_base.dir/build.make demos/CMakeFiles/demo_tutorial_basics_base.dir/depend make -f demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/depend -[ 75%] Built target demo_tutorial_alphabets_example_size -[ 75%] Built target demo_tutorial_alphabets_assignment_1 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_basics_base.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/depend +[ 75%] Built target demo_tutorial_blast_io_read_assignment +[ 75%] Built target demo_tutorial_seed_and_extend_solution4 make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/depend +make -f demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/DependInfo.cmake --color= -[ 75%] Built target demo_tutorial_background_and_motivation_example +make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_assignment_1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/depend -make -f demos/CMakeFiles/demo_tutorial_basics_base.dir/build.make demos/CMakeFiles/demo_tutorial_basics_base.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build.make demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_base.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_background_and_motivation_example.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_example_size.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_basics_base.dir/build.make demos/CMakeFiles/demo_tutorial_basics_base.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_basics_base.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build +[ 75%] Built target demo_tutorial_alphabets_assignment_1 make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 75%] Built target demo_tutorial_alphabets_example_size +make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 75%] Built target demo_tutorial_background_and_motivation_example +make -f demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_search.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 75%] Built target demo_tutorial_bed_io_solution1 +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_solution1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/depend [ 76%] Built target demo_tutorial_basics_base -make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build [ 76%] Built target demo_tutorial_gff_and_gtf_io_base -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_consensus_alignment_without_positions.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 77%] Built target demo_tutorial_index_iterators_index_search -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build -[ 78%] Built target demo_tutorial_file_io_overview_example1 +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/DependInfo.cmake --color= +[ 77%] Built target demo_tutorial_index_iterators_index_search make -f demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/depend -[ 78%] Built target demo_tutorial_consensus_alignment_without_positions -[ 78%] Built target demo_tutorial_parsing_command_line_arguments_example_with_own_function +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/DependInfo.cmake --color= +[ 77%] Built target demo_tutorial_consensus_alignment_without_positions make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/DependInfo.cmake --color= +[ 77%] Built target demo_tutorial_bed_io_solution1 make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/depend -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/DependInfo.cmake --color= -[ 78%] Built target demo_tutorial_pattern_matching_find_index_multiple +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/DependInfo.cmake --color= -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_example1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build.make demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_own_function.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_vcf_io_example1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_index_multiple.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build +[ 78%] Built target demo_tutorial_file_io_overview_example1 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_1_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_file_io_overview_solution3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 78%] Built target demo_tutorial_pattern_matching_assignment1_solution +[ 78%] Built target demo_tutorial_vcf_io_example1 +[ 78%] Built target demo_tutorial_parsing_command_line_arguments_example_with_own_function +make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/depend +[ 78%] Built target demo_tutorial_pattern_matching_find_index_multiple make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/DependInfo.cmake --color= +[ 78%] Built target demo_tutorial_pattern_matching_assignment1_solution make -f demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/depend -[ 78%] Built target demo_tutorial_file_io_overview_solution3 -[ 78%] Built target demo_tutorial_vcf_io_example1 -[ 78%] Built target demo_tutorial_fragment_store_access_aligned_reads -[ 78%] Built target demo_tutorial_iterators_assignment_1_solution make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/depend +[ 78%] Built target demo_tutorial_file_io_overview_solution3 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 78%] Built target demo_tutorial_sequences_assignment_6_solution make -f demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/DependInfo.cmake --color= +[ 78%] Built target demo_tutorial_iterators_assignment_1_solution +[ 78%] Built target demo_tutorial_fragment_store_access_aligned_reads +make -f demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_find_finder_index.dir/build.make demos/CMakeFiles/demo_dox_find_finder_index.dir/depend cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_index.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_banded.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_assignment_6_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build +make -f demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_fragment_store_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build.make demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build make -f demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_fragment_store_access_aligned_reads2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build +make -f demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_fragment_store_display_aligned_reads.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build.make demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build -make -f demos/CMakeFiles/demo_dox_find_finder_index.dir/build.make demos/CMakeFiles/demo_dox_find_finder_index.dir/build +make -f demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build.make demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_generic_programming_example_hashing.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 78%] Built target demo_tutorial_fragment_store_access_aligned_reads2 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_find_finder_index.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alphabets_example_ordValue.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 78%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_banded +[ 78%] Built target demo_tutorial_sequences_assignment_6_solution +[ 78%] Built target demo_tutorial_fragment_store_base +[ 78%] Built target demo_tutorial_fragment_store_access_aligned_reads2 +make -f demos/CMakeFiles/demo_dox_find_finder_index.dir/build.make demos/CMakeFiles/demo_dox_find_finder_index.dir/depend +[ 79%] Built target demo_tutorial_fragment_store_display_aligned_reads make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_find_finder_index.dir/DependInfo.cmake --color= +[ 79%] Built target demo_tutorial_iterators_sequence_iterator_demo make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/depend -[ 78%] Built target demo_tutorial_generic_programming_example_hashing -[ 79%] Built target demo_tutorial_fragment_store_display_aligned_reads +make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/DependInfo.cmake --color= -[ 79%] Built target demo_tutorial_fragment_store_base -make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/depend +[ 79%] Built target demo_tutorial_alphabets_example_ordValue make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_iterators_base.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_base.dir/depend +[ 79%] Built target demo_tutorial_generic_programming_example_hashing make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_base.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/depend +make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/DependInfo.cmake --color= cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_find_finder_index.dir/build.make demos/CMakeFiles/demo_dox_find_finder_index.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build -[ 79%] Built target demo_tutorial_iterators_sequence_iterator_demo -[ 79%] Built target demo_tutorial_alphabets_example_ordValue -make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 80%] Built target demo_dox_find_finder_index -make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_find_finder_index.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_iterators_base.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_base.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_base.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_comparisons.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build +make -f demos/CMakeFiles/demo_tutorial_iterators_base.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_base.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_hint.dir/build'. +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 80%] Built target demo_tutorial_index_iterators_iterator_solution2 -[ 80%] Built target demo_tutorial_sequences_example_comparisons -make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build -[ 81%] Built target demo_tutorial_genome_annotations_assignment_3_solution +make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_1_solution.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_3_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/depend -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 80%] Built target demo_dox_find_finder_index +[ 80%] Built target demo_tutorial_genome_annotations_assignment_1_solution +[ 80%] Built target demo_tutorial_index_iterators_iterator_solution2 +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/depend make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/depend +[ 80%] Built target demo_tutorial_sequences_example_comparisons +[ 80%] Built target demo_tutorial_genome_annotations_assignment_1_hint make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/DependInfo.cmake --color= -[ 81%] Built target demo_tutorial_iterators_base +[ 80%] Built target demo_tutorial_iterators_base +[ 81%] Built target demo_tutorial_genome_annotations_assignment_3_solution +make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/depend make -f demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/depend +[ 81%] Built target demo_tutorial_genome_annotations_assignment_4_solution make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/DependInfo.cmake --color= -[ 81%] Built target demo_tutorial_genome_annotations_assignment_1_hint make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/depend -[ 81%] Built target demo_tutorial_genome_annotations_assignment_1_solution -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/depend -make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_genome_annotations_assignment_4_solution.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build.make demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_count_characters.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build.make demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build +make -f demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_gff_and_gtf_io_solution2.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build.make demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build -make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_UNUSED_shape_hash_next.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 81%] Built target demo_tutorial_genome_annotations_assignment_4_solution +make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build +[ 81%] Built target demo_dox_index_UNUSED_shape_hash_next +[ 81%] Built target demo_tutorial_gff_and_gtf_io_solution2 +make -f demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build +[ 82%] Built target demo_unassigned_or_unused_tutorial_sequence_count_characters make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_iterator_solution3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 82%] Built target demo_unassigned_or_unused_tutorial_sequence_count_characters -[ 82%] Built target demo_tutorial_gff_and_gtf_io_solution2 -make -f demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build -make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 82%] Built target demo_dox_index_UNUSED_shape_hash_next -[ 82%] Built target demo_tutorial_graph_graph_hmm -[ 82%] Built target demo_tutorial_index_iterators_iterator_solution3 -make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/depend +make -f demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build.make demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_alignment_scoring_scheme_simple.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 82%] Built target demo_tutorial_index_iterators_iterator_solution3 +[ 82%] Built target demo_tutorial_graph_graph_hmm make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/DependInfo.cmake --color= -[ 83%] Built target demo_tutorial_graph_solution_1 -[ 83%] Built target demo_tutorial_alignment_scoring_scheme_simple +make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/depend make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/depend +make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build +[ 83%] Built target demo_tutorial_graph_solution_1 make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 83%] Built target demo_tutorial_alignment_scoring_scheme_simple make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build.make demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment4_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build +[ 83%] Built target demo_dox_seeds_seeds_chaining make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_bidirectional_search.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_seeds_seeds_chaining.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' @@ -126478,356 +126552,347 @@ make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_search2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build -[ 83%] Built target demo_tutorial_parsing_command_line_arguments_assignment4_solution -make -f demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build.make demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/depend -[ 83%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment1.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_index_assignment2.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build.make demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/DependInfo.cmake --color= -[ 83%] Built target demo_dox_seeds_seeds_chaining -make -f demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_consensus_alignment_with_positions.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/DependInfo.cmake --color= +[ 83%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 +[ 83%] Built target demo_tutorial_parsing_command_line_arguments_assignment4_solution +make -f demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build.make demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/depend +[ 83%] Built target demo_tutorial_index_iterators_index_assignment1 +[ 83%] Built target demo_tutorial_index_iterators_index_bidirectional_search [ 83%] Built target demo_tutorial_index_iterators_index_assignment2 +make -f demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/depend -[ 83%] Built target demo_tutorial_index_iterators_index_bidirectional_search +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/DependInfo.cmake --color= +[ 83%] Built target demo_tutorial_index_iterators_index_search2 +[ 83%] Built target demo_tutorial_consensus_alignment_with_positions make -f demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/DependInfo.cmake --color= -[ 83%] Built target demo_tutorial_consensus_alignment_with_positions -[ 83%] Built target demo_tutorial_index_iterators_index_assignment1 -[ 83%] Built target demo_tutorial_index_iterators_index_search2 +make -f demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build.make demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/depend +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build.make demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build.make demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/depend -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/depend +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_arg_parse_argument_parser.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_modreverse.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build.make demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build make -f demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build.make demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_graph_algorithms_bellman_ford_algorithm.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build -[ 83%] Built target demo_dox_arg_parse_argument_parser +make -f demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build.make demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_assignment_2.dir/build'. -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 83%] Built target demo_dox_arg_parse_argument_parser +make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_index_iterators_iterator_assignment2.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_2_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build.make demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_indices_fm_index.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' [ 83%] Built target demo_dox_graph_algorithms_bellman_ford_algorithm -[ 83%] Built target demo_tutorial_indices_assignment_2 [ 83%] Built target demo_tutorial_modifiers_modreverse -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build.make demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build -[ 83%] Built target demo_tutorial_index_iterators_iterator_assignment2 make -f demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_iterators_assignment_1.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target demo_tutorial_iterators_assignment_2_solution -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/DependInfo.cmake --color= +[ 83%] Built target demo_tutorial_index_iterators_iterator_assignment2 make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/depend make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/depend -[ 83%] Built target demo_tutorial_indices_fm_index +[ 83%] Built target demo_tutorial_indices_assignment_2 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/DependInfo.cmake --color= -[ 83%] Built target demo_tutorial_iterators_assignment_1 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/DependInfo.cmake --color= +[ 83%] Built target demo_tutorial_iterators_assignment_1 +[ 83%] Built target demo_tutorial_indices_fm_index make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/depend +[ 83%] Built target demo_tutorial_iterators_assignment_2_solution make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/DependInfo.cmake --color= -[ 83%] Built target demo_tutorial_journaled_set_base -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build -make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/depend +make -f demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build +make -f demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_base.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build +make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_struct.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment4.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_gaps_example.dir/build'. +[ 83%] Built target demo_tutorial_journaled_set_base make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target demo_tutorial_journaled_set_example_online_search +make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_example_online_search_assignment1_hint.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_assignment5.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 83%] Built target demo_tutorial_q_gram_index_index_assignment5 -make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_dox_sequence_segment.dir/build.make demos/CMakeFiles/demo_dox_sequence_segment.dir/depend -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_segment.dir/DependInfo.cmake --color= +[ 84%] Built target demo_tutorial_journaled_set_solution_online_search_assignment4 +[ 84%] Built target demo_tutorial_journaled_set_example_online_search +make -f demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build +make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_index_supermaxrepeats.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 84%] Built target demo_tutorial_journaled_set_solution_online_search_assignment4 +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_gaps_example.dir/DependInfo.cmake --color= [ 84%] Built target demo_tutorial_parsing_command_line_arguments_example_with_struct +make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/depend [ 84%] Built target demo_tutorial_journaled_set_example_online_search_assignment1_hint +make -f demos/CMakeFiles/demo_dox_sequence_segment.dir/build.make demos/CMakeFiles/demo_dox_sequence_segment.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/DependInfo.cmake --color= -[ 84%] Built target demo_dox_align_gaps_example -make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_sequence_segment.dir/DependInfo.cmake --color= +[ 84%] Built target demo_tutorial_journaled_set_solution_online_search_assignment1 +[ 84%] Built target demo_tutorial_q_gram_index_index_assignment5 +make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/depend -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/depend [ 86%] Built target demo_unassigned_or_unused_index_supermaxrepeats -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/depend -[ 86%] Built target demo_tutorial_journaled_set_solution_online_search_assignment1 -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/build -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build +make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 86%] Built target demo_tutorial_journaled_set_solution_online_search_assignment2 make -f demos/CMakeFiles/demo_dox_sequence_segment.dir/build.make demos/CMakeFiles/demo_dox_sequence_segment.dir/build +make -f demos/CMakeFiles/demo_dox_align_gaps_example.dir/build.make demos/CMakeFiles/demo_dox_align_gaps_example.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_assignment2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_sequence_segment.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_gaps_example.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build -make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build +[ 86%] Built target demo_tutorial_journaled_set_solution_online_search_assignment2 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_set_solution_online_search_finder.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build +[ 86%] Built target demo_dox_sequence_segment +make -f demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build.make demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_metafunctions_assignment1_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 86%] Built target demo_tutorial_metafunctions_assignment1_solution -[ 86%] Built target demo_tutorial_journaled_set_solution_online_search_finder make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build -[ 86%] Built target demo_tutorial_sequences_example_conversions_move -make -f demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/depend +make -f demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_metafunctions_base.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 86%] Built target demo_dox_align_gaps_example +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_conversions_move.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/depend +make -f demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/DependInfo.cmake --color= +[ 86%] Built target demo_tutorial_metafunctions_assignment1_solution +make -f demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/depend +[ 86%] Built target demo_tutorial_metafunctions_base +[ 86%] Built target demo_tutorial_journaled_set_solution_online_search_finder [ 86%] Built target demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 -[ 86%] Built target demo_dox_sequence_segment make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/depend -make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/depend make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/depend -[ 86%] Built target demo_tutorial_metafunctions_base make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/DependInfo.cmake --color= +[ 86%] Built target demo_tutorial_sequences_example_conversions_move make -f demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build.make demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/DependInfo.cmake --color= -[ 86%] Built target demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build.make demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build.make demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build -make -f demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_seeds_solution1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_blast_io_write_assignment.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 87%] Built target demo_tutorial_seeds_solution1 +make -f demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build -make -f demos/CMakeFiles/demo_dox_index_sufarray.dir/build.make demos/CMakeFiles/demo_dox_index_sufarray.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_sufarray.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 86%] Built target demo_unassigned_or_unused_tutorial_sequence_sequence_all_strings make -f demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build.make demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 87%] Built target demo_tutorial_blast_io_write_assignment -make -f demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build +[ 87%] Built target demo_tutorial_seeds_solution1 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_gff_io_UNUSED_gff_stream_read.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 87%] Built target demo_tutorial_modifiers_assignment1_solution +[ 87%] Built target demo_tutorial_blast_io_write_assignment +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/depend +make -f demos/CMakeFiles/demo_dox_index_sufarray.dir/build.make demos/CMakeFiles/demo_dox_index_sufarray.dir/depend +make -f demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_modview.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_sufarray.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build.make demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/depend [ 88%] Built target demo_tutorial_modifiers_assignment1 -make -f demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build.make demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 88%] Built target demo_tutorial_modifiers_assignment1_solution -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build -make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/depend [ 88%] Built target demo_tutorial_modifiers_modview -[ 88%] Built target demo_dox_gff_io_UNUSED_gff_stream_read +make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/depend +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/depend +make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/DependInfo.cmake --color= +[ 88%] Built target demo_dox_gff_io_UNUSED_gff_stream_read +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_index_sufarray.dir/build.make demos/CMakeFiles/demo_dox_index_sufarray.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build.make demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_sufarray.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_modifiers_nested.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build.make demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/depend -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/depend -[ 89%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_sufarray.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build.make demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build +make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 89%] Built target demo_dox_index_sufarray -make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_assignment1.dir/build -[ 89%] Built target demo_tutorial_modifiers_nested -make -f demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build.make demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/depend -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_workflows_knime_node.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' @@ -126836,75 +126901,72 @@ make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example_with_modifyString.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build.make demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_multiple_sequence_alignment_consensus.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 89%] Built target demo_tutorial_workflows_knime_node -make -f demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build.make demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 89%] Built target demo_tutorial_parsing_command_line_arguments_example_with_modifyString +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build -[ 89%] Built target demo_tutorial_multiple_sequence_alignment_assignment1 -[ 90%] Built target demo_tutorial_multiple_sequence_alignment_consensus +[ 89%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap +[ 89%] Built target demo_dox_index_sufarray +[ 89%] Built target demo_tutorial_modifiers_nested +make -f demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build.make demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/depend +[ 89%] Built target demo_tutorial_workflows_knime_node +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/depend make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/DependInfo.cmake --color= +[ 90%] Built target demo_tutorial_multiple_sequence_alignment_consensus make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/DependInfo.cmake --color= +[ 90%] Built target demo_tutorial_multiple_sequence_alignment_assignment1 +[ 90%] Built target demo_tutorial_parsing_command_line_arguments_example_with_modifyString make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/DependInfo.cmake --color= [ 90%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution2 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build.make demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/DependInfo.cmake --color= -[ 90%] Built target demo_dox_index_textAt_indexText_saAt_indexRequire +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/DependInfo.cmake --color= -[ 90%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_local -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/depend -make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_index_textAt_indexText_saAt_indexRequire.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build make -f demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build.make demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_local.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment2_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_sequences_example_functionality2.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' @@ -126912,419 +126974,428 @@ make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_alignment_global_standard.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 90%] Built target demo_tutorial_sequences_example_functionality2 [ 90%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1 -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build +[ 90%] Built target demo_dox_index_textAt_indexText_saAt_indexRequire make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 90%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_local [ 90%] Built target demo_tutorial_pattern_matching_assignment2_solution +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/depend +[ 90%] Built target demo_tutorial_sequences_example_functionality2 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 90%] Built target demo_tutorial_a_first_example_example_tags_for_print -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/depend [ 90%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5 -[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step1 +[ 90%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_standard +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/DependInfo.cmake --color= make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/DependInfo.cmake --color= -[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_alignment_global_standard make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/depend -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/DependInfo.cmake --color= -[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step3 +[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step1 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make demos/CMakeFiles/demo_howto_scores_init_score.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_scores_init_score.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build'. +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/depend make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build +make -f demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build.make demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_a_first_example_example_tags_for_print.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build.make demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step4.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_dox_align_global_alignment_banded.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build.make demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step6.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make demos/CMakeFiles/demo_howto_scores_init_score.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build'. +[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step3 make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build -[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step4 +make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_scores_init_score.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pairwise_sequence_alignment_assignment5_step5.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorial_file_io_example1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 91%] Built target demo_unassigned_or_unused_tutorial_file_io_example1 +[ 91%] Built target demo_tutorial_a_first_example_example_tags_for_print +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/DependInfo.cmake --color= +[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step4 +make -f demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make demos/CMakeFiles/demo_howto_scores_init_score.dir/depend [ 91%] Built target demo_dox_align_global_alignment_banded -[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step5 +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_howto_scores_init_score.dir/DependInfo.cmake --color= +[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step6 make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/depend -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/depend +[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step5 make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/depend -[ 91%] Built target demo_tutorial_pairwise_sequence_alignment_assignment5_step6 make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/DependInfo.cmake --color= -[ 91%] Built target demo_tutorial_parsing_command_line_arguments_assignment3_solution -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/DependInfo.cmake --color= -[ 91%] Built target demo_howto_scores_init_score +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/depend +[ 91%] Built target demo_unassigned_or_unused_tutorial_file_io_example1 make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/depend -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/DependInfo.cmake --color= -make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/depend -[ 91%] Built target demo_tutorial_parsing_command_line_arguments_assignment6_solution -make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment3_solution.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make demos/CMakeFiles/demo_howto_scores_init_score.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_assignment6_solution.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build +make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build'. make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_howto_scores_init_score.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build.make demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_unassigned_or_unused_tutorials_custim_io_solution1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 91%] Built target demo_tutorial_parsing_command_line_arguments_assignment3_solution +make -f demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build.make demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment1.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build.make demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_parsing_command_line_arguments_example1_detailed.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_simple_rna_seq_interval_tree.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build +[ 91%] Built target demo_tutorial_parsing_command_line_arguments_assignment6_solution +[ 91%] Built target demo_howto_scores_init_score +[ 92%] Built target demo_tutorial_parsing_command_line_arguments_example1 +[ 92%] Built target demo_tutorial_parsing_command_line_arguments_example1_detailed +[ 92%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution1 +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/depend +make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/DependInfo.cmake --color= +make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 91%] Built target demo_tutorial_simple_rna_seq_interval_tree +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/DependInfo.cmake --color= +[ 93%] Built target demo_tutorial_pattern_matching_assignment1 make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/depend -[ 92%] Built target demo_tutorial_parsing_command_line_arguments_example1 +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/DependInfo.cmake --color= make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/DependInfo.cmake --color= -[ 93%] Built target demo_tutorial_pattern_matching_assignment1 -[ 94%] Built target demo_tutorial_q_gram_index_index_qgram make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/depend -[ 94%] Built target demo_unassigned_or_unused_tutorials_custim_io_solution1 -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/alf /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/alf /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color= +[ 93%] Built target demo_tutorial_simple_rna_seq_interval_tree make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/bs_tools /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/bs_tools /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/alf /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/alf /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color= +make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/bs_tools /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/bs_tools /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color= -[ 94%] Built target demo_tutorial_pattern_matching_assignment3 -make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/depend -[ 94%] Built target demo_tutorial_parsing_command_line_arguments_example1_detailed -[ 94%] Built target demo_tutorial_bed_io_solution3 -make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/depend -make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/bs_tools /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/bs_tools /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/bs_tools /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/bs_tools /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/dfi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/dfi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= -make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/bs_tools /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/bs_tools /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_assignment3.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build.make demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build.make demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_bed_io_solution3.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 93%] Built target demo_tutorial_pattern_matching_assignment3 make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build.make demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/alf/CMakeFiles/alf.dir/build.make apps/alf/CMakeFiles/alf.dir/build -make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/alf/CMakeFiles/alf.dir/build'. +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_q_gram_index_index_qgram.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/bs_tools/CMakeFiles/four2three.dir/build.make apps/bs_tools/CMakeFiles/four2three.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'demos/CMakeFiles/demo_tutorial_pattern_matching_find_approx.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/bs_tools/CMakeFiles/casbar.dir/build.make apps/bs_tools/CMakeFiles/casbar.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/bs_tools/CMakeFiles/four2three.dir/build'. +make[3]: Nothing to be done for 'apps/alf/CMakeFiles/alf.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make -f apps/bs_tools/CMakeFiles/bisar.dir/build.make apps/bs_tools/CMakeFiles/bisar.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/bs_tools/CMakeFiles/four2three.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/bs_tools/CMakeFiles/casbar.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/bs_tools/CMakeFiles/bisar.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/build +[ 93%] Built target demo_tutorial_bed_io_solution3 +[ 94%] Built target demo_tutorial_q_gram_index_index_qgram +make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/depend [ 95%] Built target demo_tutorial_pattern_matching_find_approx -[ 95%] Built target alf +make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/depend +make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/dfi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/dfi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/fiona/CMakeFiles/fiona.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 95%] Built target casbar -make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/build +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= +[ 95%] Built target alf +make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= -[ 95%] Built target bisar -[ 95%] Built target four2three -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/build -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/dfi/CMakeFiles/dfi.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/fiona/CMakeFiles/fiona_illumina.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= +[ 95%] Built target casbar make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/fx_tools /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fx_tools /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= +[ 95%] Built target four2three make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 95%] Built target fiona -make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/build cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/fx_tools /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fx_tools /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= +[ 95%] Built target bisar make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/fiona/CMakeFiles/compute_gain.dir/build'. +make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/depend +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 95%] Built target fiona_illumina -[ 95%] Built target dfi make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/gustaf /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/gustaf /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/DependInfo.cmake --color= -make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/depend -make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/depend -make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/insegt /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/gustaf /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/gustaf /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color= -make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/depend -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= -[ 95%] Built target compute_gain +make -f apps/dfi/CMakeFiles/dfi.dir/build.make apps/dfi/CMakeFiles/dfi.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build +make -f apps/fiona/CMakeFiles/fiona_illumina.dir/build.make apps/fiona/CMakeFiles/fiona_illumina.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/fiona/CMakeFiles/fiona.dir/build.make apps/fiona/CMakeFiles/fiona.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= -make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend +make[3]: Nothing to be done for 'apps/dfi/CMakeFiles/dfi.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/fiona/CMakeFiles/compute_gain.dir/build.make apps/fiona/CMakeFiles/compute_gain.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'apps/fiona/CMakeFiles/fiona_illumina.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'. +make[3]: Nothing to be done for 'apps/fiona/CMakeFiles/fiona.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'. +make[3]: Nothing to be done for 'apps/fiona/CMakeFiles/compute_gain.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/build +make -f apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/insegt/CMakeFiles/insegt.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/build +make -f apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build.make apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build'. +make[3]: Nothing to be done for 'apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_genome.dir/build'. +make[3]: Nothing to be done for 'apps/gustaf/CMakeFiles/gustaf_mate_joining.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 95%] Built target fx_fastq_stats -[ 95%] Built target insegt make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/build -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 95%] Built target fx_bam_coverage make -f apps/gustaf/CMakeFiles/gustaf.dir/build.make apps/gustaf/CMakeFiles/gustaf.dir/build +[ 95%] Built target fiona +[ 95%] Built target fiona_illumina +[ 95%] Built target dfi +[ 95%] Built target compute_gain +[ 95%] Built target fx_fastq_stats make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/gustaf/CMakeFiles/gustaf.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_methylation.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build -make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/insegt /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= +make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/depend +[ 95%] Built target fx_bam_coverage +make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/depend [ 95%] Built target gustaf_mate_joining make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= +make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= +make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/depend +[ 96%] Built target gustaf make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/depend -make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= +make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/depend make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/depend -[ 95%] Built target mason_frag_sequencing make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= -[ 95%] Built target mason_genome -make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/depend -[ 96%] Built target mason_methylation -make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/depend -[ 97%] Built target gustaf +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= -make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/micro_razers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= -make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/depend +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/build +make -f apps/insegt/CMakeFiles/insegt.dir/build.make apps/insegt/CMakeFiles/insegt.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/build +make -f apps/mason2/CMakeFiles/mason_genome.dir/build.make apps/mason2/CMakeFiles/mason_genome.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_materializer.dir/build'. +make[3]: Nothing to be done for 'apps/insegt/CMakeFiles/insegt.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/mason2/CMakeFiles/mason_methylation.dir/build.make apps/mason2/CMakeFiles/mason_methylation.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_variator.dir/build'. +make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_genome.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_simulator.dir/build'. -make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/mason2/CMakeFiles/mason_materializer.dir/build.make apps/mason2/CMakeFiles/mason_materializer.dir/build +make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_methylation.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/micro_razers/CMakeFiles/micro_razers.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build +make -f apps/mason2/CMakeFiles/mason_variator.dir/build.make apps/mason2/CMakeFiles/mason_variator.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target mason_materializer +make -f apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make -f apps/mason2/CMakeFiles/mason_splicing.dir/build.make apps/mason2/CMakeFiles/mason_splicing.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_tests.dir/build'. +make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_materializer.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'. +make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_variator.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/mason2/CMakeFiles/mason_simulator.dir/build.make apps/mason2/CMakeFiles/mason_simulator.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 96%] Built target insegt make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_splicing.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 97%] Built target mason_simulator make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/bam2roi.dir/build'. +make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_simulator.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 96%] Built target mason_genome +[ 97%] Built target mason_methylation +make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/depend +[ 97%] Built target mason_materializer +make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/depend +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2 /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= [ 97%] Built target mason_variator +make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend +make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/depend +[ 97%] Built target mason_frag_sequencing make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend -[ 97%] Built target mason_tests -[ 98%] Built target roi_feature_projection +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= +[ 97%] Built target mason_splicing +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/micro_razers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/depend make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= +[ 97%] Built target mason_simulator +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= -[ 98%] Built target mason_splicing -[ 98%] Built target micro_razers -[ 98%] Built target bam2roi +cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/mason2/CMakeFiles/mason_tests.dir/build.make apps/mason2/CMakeFiles/mason_tests.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make apps/ngs_roi/CMakeFiles/bam2roi.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/mason2/CMakeFiles/mason_tests.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/micro_razers/CMakeFiles/micro_razers.dir/build.make apps/micro_razers/CMakeFiles/micro_razers.dir/build make -f apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/bam2roi.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/micro_razers/CMakeFiles/micro_razers.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/pair_align/lib/CMakeFiles/pair_align_lib.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make -f apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build'. make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' -[ 98%] Built target roi_plot_thumbnails +make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'. +make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' +[ 97%] Built target mason_tests +[ 97%] Built target micro_razers +[ 97%] Built target bam2roi +[ 98%] Built target roi_feature_projection [ 98%] Built target pair_align_lib make -f apps/pair_align/CMakeFiles/pair_align.dir/build.make apps/pair_align/CMakeFiles/pair_align.dir/depend +[ 98%] Built target roi_plot_thumbnails make[3]: Entering directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' cd /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan2-2.4.0+dfsg /build/seqan2-2.4.0+dfsg/apps/pair_align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align /build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' @@ -127350,218 +127421,218 @@ Start 6: test_test_align_extend Start 7: test_align_parallel_data_structures Start 8: test_test_align_parallel_interface - 1/107 Test #1: test_test_align .................................... Passed 0.10 sec + 1/107 Test #1: test_test_align .................................... Passed 0.19 sec Start 9: test_test_align_parallel_algorithm - 2/107 Test #5: test_test_align_simd_local_variable_length ......... Passed 0.08 sec + 2/107 Test #4: test_test_align_simd_local_equal_length ............ Passed 0.22 sec Start 10: test_test_align_profile - 3/107 Test #6: test_test_align_extend ............................. Passed 0.08 sec + 3/107 Test #5: test_test_align_simd_local_variable_length ......... Passed 0.24 sec Start 11: test_test_align_split - 4/107 Test #4: test_test_align_simd_local_equal_length ............ Passed 0.14 sec + 4/107 Test #6: test_test_align_extend ............................. Passed 0.22 sec Start 12: test_test_alignment_free - 5/107 Test #10: test_test_align_profile ............................ Passed 0.09 sec + 5/107 Test #10: test_test_align_profile ............................ Passed 0.12 sec Start 13: test_test_arg_parse 6/107 Test #11: test_test_align_split .............................. Passed 0.10 sec Start 14: test_test_arg_parse_version_check - 7/107 Test #13: test_test_arg_parse ................................ Passed 0.07 sec + 7/107 Test #3: test_test_align_simd_global_variable_length ........ Passed 0.37 sec Start 15: test_test_bam_io - 8/107 Test #7: test_align_parallel_data_structures ................ Passed 0.20 sec + 8/107 Test #13: test_test_arg_parse ................................ Passed 0.03 sec Start 16: test_test_basic_exception - 9/107 Test #3: test_test_align_simd_global_variable_length ........ Passed 0.33 sec + 9/107 Test #16: test_test_basic_exception .......................... Passed 0.01 sec Start 17: test_test_basic_metaprogramming - 10/107 Test #16: test_test_basic_exception .......................... Passed 0.08 sec + 10/107 Test #17: test_test_basic_metaprogramming .................... Passed 0.03 sec Start 18: test_test_basic_fundamental - 11/107 Test #18: test_test_basic_fundamental ........................ Passed 0.01 sec + 11/107 Test #7: test_align_parallel_data_structures ................ Passed 0.35 sec Start 19: test_test_basic_concept - 12/107 Test #17: test_test_basic_metaprogramming .................... Passed 0.05 sec + 12/107 Test #19: test_test_basic_concept ............................ Passed 0.01 sec Start 20: test_test_basic_alphabet - 13/107 Test #19: test_test_basic_concept ............................ Passed 0.04 sec + 13/107 Test #20: test_test_basic_alphabet ........................... Passed 0.01 sec Start 21: test_test_basic_aggregate - 14/107 Test #20: test_test_basic_alphabet ........................... Passed 0.04 sec + 14/107 Test #21: test_test_basic_aggregate .......................... Passed 0.03 sec Start 22: test_test_basic_allocator - 15/107 Test #21: test_test_basic_aggregate .......................... Passed 0.04 sec + 15/107 Test #18: test_test_basic_fundamental ........................ Passed 0.09 sec Start 23: test_test_basic_parallelism 16/107 Test #22: test_test_basic_allocator .......................... Passed 0.03 sec Start 24: test_test_basic_math - 17/107 Test #2: test_test_align_simd_global_equal_length ........... Passed 0.47 sec + 17/107 Test #24: test_test_basic_math ............................... Passed 0.02 sec Start 25: test_test_basic_smart_pointer - 18/107 Test #23: test_test_basic_parallelism ........................ Passed 0.04 sec + 18/107 Test #25: test_test_basic_smart_pointer ...................... Passed 0.03 sec Start 26: test_test_basic_container - 19/107 Test #24: test_test_basic_math ............................... Passed 0.04 sec + 19/107 Test #23: test_test_basic_parallelism ........................ Passed 0.08 sec Start 27: test_test_basic_proxy - 20/107 Test #14: test_test_arg_parse_version_check .................. Passed 0.29 sec + 20/107 Test #26: test_test_basic_container .......................... Passed 0.05 sec Start 28: test_test_basic_iterator - 21/107 Test #25: test_test_basic_smart_pointer ...................... Passed 0.06 sec + 21/107 Test #27: test_test_basic_proxy .............................. Passed 0.04 sec Start 29: test_test_bed_io - 22/107 Test #26: test_test_basic_container .......................... Passed 0.06 sec + 22/107 Test #28: test_test_basic_iterator ........................... Passed 0.03 sec Start 30: test_blast - 23/107 Test #27: test_test_basic_proxy .............................. Passed 0.07 sec + 23/107 Test #29: test_test_bed_io ................................... Passed 0.06 sec Start 31: test_test_consensus - 24/107 Test #28: test_test_basic_iterator ........................... Passed 0.10 sec + 24/107 Test #2: test_test_align_simd_global_equal_length ........... Passed 0.88 sec Start 32: test_test_consensus_v2 - 25/107 Test #29: test_test_bed_io ................................... Passed 0.11 sec + 25/107 Test #14: test_test_arg_parse_version_check .................. Passed 0.52 sec Start 33: test_test_find - 26/107 Test #31: test_test_consensus ................................ Passed 0.18 sec + 26/107 Test #31: test_test_consensus ................................ Passed 0.33 sec Start 34: test_test_gff_io - 27/107 Test #30: test_blast ......................................... Passed 0.24 sec + 27/107 Test #34: test_test_gff_io ................................... Passed 0.04 sec Start 35: test_test_graph_algorithms - 28/107 Test #34: test_test_gff_io ................................... Passed 0.08 sec + 28/107 Test #35: test_test_graph_algorithms ......................... Passed 0.03 sec Start 36: test_test_graph_align - 29/107 Test #35: test_test_graph_algorithms ......................... Passed 0.07 sec + 29/107 Test #36: test_test_graph_align .............................. Passed 0.02 sec Start 37: test_test_graph_msa - 30/107 Test #8: test_test_align_parallel_interface ................. Passed 0.82 sec + 30/107 Test #8: test_test_align_parallel_interface ................. Passed 1.07 sec Start 38: test_test_graph_types_property_map - 31/107 Test #36: test_test_graph_align .............................. Passed 0.10 sec + 31/107 Test #38: test_test_graph_types_property_map ................. Passed 0.03 sec Start 39: test_test_graph_types_derived - 32/107 Test #38: test_test_graph_types_property_map ................. Passed 0.07 sec + 32/107 Test #39: test_test_graph_types_derived ...................... Passed 0.04 sec Start 40: test_test_graph_types_iterators - 33/107 Test #39: test_test_graph_types_derived ...................... Passed 0.05 sec + 33/107 Test #40: test_test_graph_types_iterators .................... Passed 0.03 sec Start 41: test_test_graph_types_types - 34/107 Test #40: test_test_graph_types_iterators .................... Passed 0.04 sec + 34/107 Test #30: test_blast ......................................... Passed 0.66 sec Start 42: test_test_graph_types_utils 35/107 Test #41: test_test_graph_types_types ........................ Passed 0.05 sec Start 43: test_test_index_creation - 36/107 Test #42: test_test_graph_types_utils ........................ Passed 0.04 sec + 36/107 Test #42: test_test_graph_types_utils ........................ Passed 0.08 sec Start 44: test_test_index_crosscompare_char - 37/107 Test #44: test_test_index_crosscompare_char .................. Passed 0.03 sec + 37/107 Test #44: test_test_index_crosscompare_char .................. Passed 0.07 sec Start 45: test_test_index_crosscompare_char_dfi - 38/107 Test #45: test_test_index_crosscompare_char_dfi .............. Passed 0.03 sec + 38/107 Test #45: test_test_index_crosscompare_char_dfi .............. Passed 0.05 sec Start 46: test_test_index_crosscompare_dna - 39/107 Test #46: test_test_index_crosscompare_dna ................... Passed 0.05 sec + 39/107 Test #46: test_test_index_crosscompare_dna ................... Passed 0.22 sec Start 47: test_test_index_crosscompare_dna_dfi - 40/107 Test #47: test_test_index_crosscompare_dna_dfi ............... Passed 0.02 sec + 40/107 Test #47: test_test_index_crosscompare_dna_dfi ............... Passed 0.05 sec Start 48: test_test_index_qgram - 41/107 Test #48: test_test_index_qgram .............................. Passed 0.04 sec + 41/107 Test #48: test_test_index_qgram .............................. Passed 0.08 sec Start 49: test_test_index_sa_bwtwalk - 42/107 Test #9: test_test_align_parallel_algorithm ................. Passed 1.57 sec + 42/107 Test #49: test_test_index_sa_bwtwalk ......................... Passed 1.62 sec Start 50: test_test_index_shapes - 43/107 Test #43: test_test_index_creation ........................... Passed 0.65 sec + 43/107 Test #50: test_test_index_shapes ............................. Passed 0.05 sec Start 51: test_test_index_drawing - 44/107 Test #50: test_test_index_shapes ............................. Passed 0.03 sec + 44/107 Test #51: test_test_index_drawing ............................ Passed 0.02 sec Start 52: test_test_index_fm_rank_dictionary - 45/107 Test #51: test_test_index_drawing ............................ Passed 0.03 sec + 45/107 Test #43: test_test_index_creation ........................... Passed 2.59 sec Start 53: test_test_index_fm_sparse_string - 46/107 Test #49: test_test_index_sa_bwtwalk ......................... Passed 0.52 sec + 46/107 Test #53: test_test_index_fm_sparse_string ................... Passed 0.07 sec Start 54: test_test_index_base - 47/107 Test #53: test_test_index_fm_sparse_string ................... Passed 0.04 sec + 47/107 Test #37: test_test_graph_msa ................................ Passed 3.37 sec Start 55: test_test_index_fm - 48/107 Test #32: test_test_consensus_v2 ............................. Passed 1.22 sec + 48/107 Test #9: test_test_align_parallel_algorithm ................. Passed 4.50 sec Start 56: test_test_index_bifm - 49/107 Test #33: test_test_find ..................................... Passed 1.70 sec + 49/107 Test #32: test_test_consensus_v2 ............................. Passed 3.96 sec Start 57: test_test_index_vstree - 50/107 Test #37: test_test_graph_msa ................................ Passed 2.03 sec + 50/107 Test #33: test_test_find ..................................... Passed 6.29 sec Start 58: test_test_index_view - 51/107 Test #58: test_test_index_view ............................... Passed 0.07 sec + 51/107 Test #58: test_test_index_view ............................... Passed 0.05 sec Start 59: test_test_index_finder - 52/107 Test #52: test_test_index_fm_rank_dictionary ................. Passed 2.85 sec + 52/107 Test #52: test_test_index_fm_rank_dictionary ................. Passed 7.68 sec Start 60: test_test_find_backtracking - 53/107 Test #60: test_test_find_backtracking ........................ Passed 0.06 sec + 53/107 Test #60: test_test_find_backtracking ........................ Passed 0.09 sec Start 61: test_test_index_repeats - 54/107 Test #61: test_test_index_repeats ............................ Passed 0.11 sec + 54/107 Test #61: test_test_index_repeats ............................ Passed 0.18 sec Start 62: test_test_journaled_set - 55/107 Test #62: test_test_journaled_set ............................ Passed 0.01 sec + 55/107 Test #62: test_test_journaled_set ............................ Passed 0.07 sec Start 63: test_test_journaled_string_tree - 56/107 Test #63: test_test_journaled_string_tree .................... Passed 0.07 sec + 56/107 Test #63: test_test_journaled_string_tree .................... Passed 0.01 sec Start 64: test_test_delta_map - 57/107 Test #64: test_test_delta_map ................................ Passed 0.03 sec + 57/107 Test #64: test_test_delta_map ................................ Passed 0.05 sec Start 65: test_journaled_string_tree_traverser - 58/107 Test #65: test_journaled_string_tree_traverser ............... Passed 0.22 sec + 58/107 Test #65: test_journaled_string_tree_traverser ............... Passed 0.32 sec Start 66: test_journaled_string_tree_find - 59/107 Test #12: test_test_alignment_free ........................... Passed 7.40 sec + 59/107 Test #59: test_test_index_finder ............................. Passed 8.38 sec Start 67: test_test_map - 60/107 Test #57: test_test_index_vstree ............................. Passed 5.26 sec + 60/107 Test #12: test_test_alignment_free ........................... Passed 15.80 sec Start 68: test_test_misc - 61/107 Test #68: test_test_misc ..................................... Passed 0.03 sec + 61/107 Test #68: test_test_misc ..................................... Passed 0.02 sec Start 69: test_test_modifier - 62/107 Test #69: test_test_modifier ................................. Passed 0.12 sec + 62/107 Test #69: test_test_modifier ................................. Passed 0.13 sec Start 70: test_test_modifier_cyclic_shape - 63/107 Test #70: test_test_modifier_cyclic_shape .................... Passed 0.03 sec + 63/107 Test #70: test_test_modifier_cyclic_shape .................... Passed 0.12 sec Start 71: test_test_multiple_translation_units - 64/107 Test #71: test_test_multiple_translation_units ............... Passed 0.02 sec + 64/107 Test #71: test_test_multiple_translation_units ............... Passed 0.06 sec Start 72: test_test_parallel - 65/107 Test #59: test_test_index_finder ............................. Passed 5.04 sec + 65/107 Test #57: test_test_index_vstree ............................. Passed 14.17 sec Start 73: test_test_parse_lm 66/107 Test #73: test_test_parse_lm ................................. Passed 0.06 sec Start 74: test_test_pipe - 67/107 Test #54: test_test_index_base ............................... Passed 7.99 sec + 67/107 Test #72: test_test_parallel ................................. Passed 9.80 sec Start 75: test_test_platform - 68/107 Test #75: test_test_platform ................................. Passed 0.01 sec + 68/107 Test #75: test_test_platform ................................. Passed 0.04 sec Start 76: test_test_random - 69/107 Test #76: test_test_random ................................... Passed 0.08 sec + 69/107 Test #76: test_test_random ................................... Passed 0.13 sec Start 77: test_test_realign - 70/107 Test #77: test_test_realign .................................. Passed 3.00 sec + 70/107 Test #54: test_test_index_base ............................... Passed 24.69 sec Start 78: test_reduced_aminoacid - 71/107 Test #72: test_test_parallel ................................. Passed 5.06 sec + 71/107 Test #78: test_reduced_aminoacid ............................. Passed 0.09 sec Start 79: test_test_rna_io - 72/107 Test #78: test_reduced_aminoacid ............................. Passed 0.09 sec + 72/107 Test #79: test_test_rna_io ................................... Passed 0.33 sec Start 80: test_test_roi_io - 73/107 Test #80: test_test_roi_io ................................... Passed 0.02 sec + 73/107 Test #80: test_test_roi_io ................................... Passed 0.13 sec Start 81: test_test_score - 74/107 Test #81: test_test_score .................................... Passed 0.04 sec + 74/107 Test #81: test_test_score .................................... Passed 0.09 sec Start 82: test_test_seeds_combination - 75/107 Test #79: test_test_rna_io ................................... Passed 0.18 sec + 75/107 Test #82: test_test_seeds_combination ........................ Passed 0.07 sec Start 83: test_test_seeds_extension - 76/107 Test #82: test_test_seeds_combination ........................ Passed 0.06 sec + 76/107 Test #83: test_test_seeds_extension .......................... Passed 0.01 sec Start 84: test_test_seeds_global_chaining - 77/107 Test #83: test_test_seeds_extension .......................... Passed 0.06 sec + 77/107 Test #84: test_test_seeds_global_chaining .................... Passed 0.03 sec Start 85: test_test_seeds_seed_base - 78/107 Test #84: test_test_seeds_global_chaining .................... Passed 0.07 sec + 78/107 Test #85: test_test_seeds_seed_base .......................... Passed 0.07 sec Start 86: test_test_seeds_seed_chained - 79/107 Test #85: test_test_seeds_seed_base .......................... Passed 0.06 sec + 79/107 Test #86: test_test_seeds_seed_chained ....................... Passed 0.08 sec Start 87: test_test_seeds_seed_diagonal - 80/107 Test #86: test_test_seeds_seed_chained ....................... Passed 0.04 sec + 80/107 Test #87: test_test_seeds_seed_diagonal ...................... Passed 0.04 sec Start 88: test_test_seeds_seed_set_base - 81/107 Test #87: test_test_seeds_seed_diagonal ...................... Passed 0.04 sec + 81/107 Test #88: test_test_seeds_seed_set_base ...................... Passed 0.08 sec Start 89: test_test_seeds_seed_set_unordered - 82/107 Test #88: test_test_seeds_seed_set_base ...................... Passed 0.05 sec + 82/107 Test #89: test_test_seeds_seed_set_unordered ................. Passed 0.10 sec Start 90: test_test_seeds_align_banded_chain_impl - 83/107 Test #89: test_test_seeds_seed_set_unordered ................. Passed 0.05 sec + 83/107 Test #90: test_test_seeds_align_banded_chain_impl ............ Passed 0.61 sec Start 91: test_test_seeds_banded_chain_alignment_interface - 84/107 Test #91: test_test_seeds_banded_chain_alignment_interface ... Passed 0.13 sec + 84/107 Test #91: test_test_seeds_banded_chain_alignment_interface ... Passed 0.32 sec Start 92: test_test_seq_io - 85/107 Test #90: test_test_seeds_align_banded_chain_impl ............ Passed 0.26 sec + 85/107 Test #77: test_test_realign .................................. Passed 5.26 sec Start 93: test_test_sequence - 86/107 Test #67: test_test_map ...................................... Passed 6.00 sec + 86/107 Test #93: test_test_sequence ................................. Passed 0.23 sec Start 94: test_test_sequence_v2 - 87/107 Test #93: test_test_sequence ................................. Passed 0.07 sec + 87/107 Test #92: test_test_seq_io ................................... Passed 1.12 sec Start 95: test_test_stringset_v2 - 88/107 Test #95: test_test_stringset_v2 ............................. Passed 0.08 sec + 88/107 Test #95: test_test_stringset_v2 ............................. Passed 0.06 sec Start 96: test_test_sequence_journaled - 89/107 Test #92: test_test_seq_io ................................... Passed 0.31 sec + 89/107 Test #96: test_test_sequence_journaled ....................... Passed 0.20 sec Start 97: test_test_simd_vector - 90/107 Test #94: test_test_sequence_v2 .............................. Passed 0.18 sec + 90/107 Test #97: test_test_simd_vector .............................. Passed 0.04 sec Start 98: test_test_simple_intervals_io - 91/107 Test #97: test_test_simd_vector .............................. Passed 0.06 sec + 91/107 Test #98: test_test_simple_intervals_io ...................... Passed 0.15 sec Start 99: test_test_statistics - 92/107 Test #96: test_test_sequence_journaled ....................... Passed 0.13 sec + 92/107 Test #99: test_test_statistics ............................... Passed 0.26 sec Start 100: test_test_store - 93/107 Test #98: test_test_simple_intervals_io ...................... Passed 0.05 sec + 93/107 Test #94: test_test_sequence_v2 .............................. Passed 1.31 sec Start 101: test_test_stream - 94/107 Test #99: test_test_statistics ............................... Passed 0.09 sec + 94/107 Test #74: test_test_pipe ..................................... Passed 14.76 sec Start 102: test_test_find_swift - 95/107 Test #102: test_test_find_swift ............................... Passed 0.06 sec + 95/107 Test #102: test_test_find_swift ............................... Passed 0.04 sec Start 103: test_test_tabix_io - 96/107 Test #103: test_test_tabix_io ................................. Passed 0.29 sec + 96/107 Test #103: test_test_tabix_io ................................. Passed 0.12 sec Start 104: test_translation - 97/107 Test #104: test_translation ................................... Passed 0.49 sec + 97/107 Test #104: test_translation ................................... Passed 0.53 sec Start 105: test_ucsc_io - 98/107 Test #105: test_ucsc_io ....................................... Passed 0.05 sec + 98/107 Test #105: test_ucsc_io ....................................... Passed 0.15 sec Start 106: test_test_vcf_io - 99/107 Test #106: test_test_vcf_io ................................... Passed 0.07 sec + 99/107 Test #106: test_test_vcf_io ................................... Passed 0.10 sec Start 107: test_test_funcs_param_chooser -100/107 Test #107: test_test_funcs_param_chooser ...................... Passed 0.03 sec -101/107 Test #100: test_test_store .................................... Passed 3.88 sec -102/107 Test #74: test_test_pipe ..................................... Passed 12.94 sec -103/107 Test #55: test_test_index_fm ................................. Passed 20.30 sec -104/107 Test #101: test_test_stream ................................... Passed 10.90 sec -105/107 Test #66: test_journaled_string_tree_find .................... Passed 34.84 sec -106/107 Test #56: test_test_index_bifm ............................... Passed 46.00 sec -107/107 Test #15: test_test_bam_io ................................... Passed 67.50 sec +100/107 Test #107: test_test_funcs_param_chooser ...................... Passed 0.11 sec +101/107 Test #55: test_test_index_fm ................................. Passed 36.39 sec +102/107 Test #100: test_test_store .................................... Passed 8.34 sec +103/107 Test #67: test_test_map ...................................... Passed 27.68 sec +104/107 Test #101: test_test_stream ................................... Passed 23.17 sec +105/107 Test #66: test_journaled_string_tree_find .................... Passed 63.01 sec +106/107 Test #15: test_test_bam_io ................................... Passed 85.18 sec +107/107 Test #56: test_test_index_bifm ............................... Passed 84.21 sec 100% tests passed, 0 tests failed out of 107 -Total Test time (real) = 67.80 sec +Total Test time (real) = 88.97 sec make[1]: Leaving directory '/build/seqan2-2.4.0+dfsg/obj-aarch64-linux-gnu' - rm -fr -- /tmp/dh-xdg-rundir-SKWCsNit + rm -fr -- /tmp/dh-xdg-rundir-E2vZjwEl create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/seqan-apps.substvars debian/libseqan2-dev.substvars @@ -128633,13 +128704,13 @@ /build/seqan2-2.4.0+dfsg/debian/generate_manpages dh_installman --arch install -p -m0644 debian/tmp/usr/share/man/man1/sak.1 debian/seqan-apps/usr/share/man/man1/sak.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/alf.1 debian/seqan-apps/usr/share/man/man1/gustaf.1 debian/seqan-apps/usr/share/man/man1/insegt.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/rabema_build_gold_standard.1 debian/seqan-apps/usr/share/man/man1/rabema_evaluate.1 debian/seqan-apps/usr/share/man/man1/rabema_prepare_sam.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/stellar.1 debian/seqan-apps/usr/share/man/man1/tree_recon.1 debian/seqan-apps/usr/share/man/man1/yara_indexer.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/mason_frag_sequencing.1 debian/seqan-apps/usr/share/man/man1/mason_genome.1 debian/seqan-apps/usr/share/man/man1/mason_materializer.1 man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/mason_methylation.1 debian/seqan-apps/usr/share/man/man1/micro_razers.1 debian/seqan-apps/usr/share/man/man1/pair_align.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/rabema_build_gold_standard.1 debian/seqan-apps/usr/share/man/man1/rabema_evaluate.1 debian/seqan-apps/usr/share/man/man1/rabema_prepare_sam.1 man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/seqan_tcoffee.1 debian/seqan-apps/usr/share/man/man1/snp_store.1 debian/seqan-apps/usr/share/man/man1/splazers.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/mason_frag_sequencing.1 debian/seqan-apps/usr/share/man/man1/mason_genome.1 debian/seqan-apps/usr/share/man/man1/mason_materializer.1 man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/razers.1 debian/seqan-apps/usr/share/man/man1/razers3.1 debian/seqan-apps/usr/share/man/man1/sak.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/stellar.1 debian/seqan-apps/usr/share/man/man1/tree_recon.1 debian/seqan-apps/usr/share/man/man1/yara_indexer.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/alf.1 debian/seqan-apps/usr/share/man/man1/gustaf.1 debian/seqan-apps/usr/share/man/man1/insegt.1 man-recode --to-code UTF-8 --suffix .dh-new debian/seqan-apps/usr/share/man/man1/yara_mapper.1 mv debian/seqan-apps/usr/share/man/man1/yara_mapper.1.dh-new debian/seqan-apps/usr/share/man/man1/yara_mapper.1 chmod 0644 -- debian/seqan-apps/usr/share/man/man1/yara_mapper.1 @@ -128647,26 +128718,26 @@ mv debian/seqan-apps/usr/share/man/man1/mason_genome.1.dh-new debian/seqan-apps/usr/share/man/man1/mason_genome.1 mv debian/seqan-apps/usr/share/man/man1/mason_materializer.1.dh-new debian/seqan-apps/usr/share/man/man1/mason_materializer.1 chmod 0644 -- debian/seqan-apps/usr/share/man/man1/mason_frag_sequencing.1 debian/seqan-apps/usr/share/man/man1/mason_genome.1 debian/seqan-apps/usr/share/man/man1/mason_materializer.1 - mv debian/seqan-apps/usr/share/man/man1/seqan_tcoffee.1.dh-new debian/seqan-apps/usr/share/man/man1/seqan_tcoffee.1 - mv debian/seqan-apps/usr/share/man/man1/snp_store.1.dh-new debian/seqan-apps/usr/share/man/man1/snp_store.1 - mv debian/seqan-apps/usr/share/man/man1/splazers.1.dh-new debian/seqan-apps/usr/share/man/man1/splazers.1 - chmod 0644 -- debian/seqan-apps/usr/share/man/man1/seqan_tcoffee.1 debian/seqan-apps/usr/share/man/man1/snp_store.1 debian/seqan-apps/usr/share/man/man1/splazers.1 + mv debian/seqan-apps/usr/share/man/man1/stellar.1.dh-new debian/seqan-apps/usr/share/man/man1/stellar.1 + mv debian/seqan-apps/usr/share/man/man1/tree_recon.1.dh-new debian/seqan-apps/usr/share/man/man1/tree_recon.1 + mv debian/seqan-apps/usr/share/man/man1/yara_indexer.1.dh-new debian/seqan-apps/usr/share/man/man1/yara_indexer.1 + chmod 0644 -- debian/seqan-apps/usr/share/man/man1/stellar.1 debian/seqan-apps/usr/share/man/man1/tree_recon.1 debian/seqan-apps/usr/share/man/man1/yara_indexer.1 mv debian/seqan-apps/usr/share/man/man1/rabema_build_gold_standard.1.dh-new debian/seqan-apps/usr/share/man/man1/rabema_build_gold_standard.1 mv debian/seqan-apps/usr/share/man/man1/rabema_evaluate.1.dh-new debian/seqan-apps/usr/share/man/man1/rabema_evaluate.1 mv debian/seqan-apps/usr/share/man/man1/rabema_prepare_sam.1.dh-new debian/seqan-apps/usr/share/man/man1/rabema_prepare_sam.1 chmod 0644 -- debian/seqan-apps/usr/share/man/man1/rabema_build_gold_standard.1 debian/seqan-apps/usr/share/man/man1/rabema_evaluate.1 debian/seqan-apps/usr/share/man/man1/rabema_prepare_sam.1 - mv debian/seqan-apps/usr/share/man/man1/razers.1.dh-new debian/seqan-apps/usr/share/man/man1/razers.1 - mv debian/seqan-apps/usr/share/man/man1/razers3.1.dh-new debian/seqan-apps/usr/share/man/man1/razers3.1 - mv debian/seqan-apps/usr/share/man/man1/sak.1.dh-new debian/seqan-apps/usr/share/man/man1/sak.1 - chmod 0644 -- debian/seqan-apps/usr/share/man/man1/razers.1 debian/seqan-apps/usr/share/man/man1/razers3.1 debian/seqan-apps/usr/share/man/man1/sak.1 + mv debian/seqan-apps/usr/share/man/man1/seqan_tcoffee.1.dh-new debian/seqan-apps/usr/share/man/man1/seqan_tcoffee.1 + mv debian/seqan-apps/usr/share/man/man1/snp_store.1.dh-new debian/seqan-apps/usr/share/man/man1/snp_store.1 + mv debian/seqan-apps/usr/share/man/man1/splazers.1.dh-new debian/seqan-apps/usr/share/man/man1/splazers.1 + chmod 0644 -- debian/seqan-apps/usr/share/man/man1/seqan_tcoffee.1 debian/seqan-apps/usr/share/man/man1/snp_store.1 debian/seqan-apps/usr/share/man/man1/splazers.1 mv debian/seqan-apps/usr/share/man/man1/mason_methylation.1.dh-new debian/seqan-apps/usr/share/man/man1/mason_methylation.1 mv debian/seqan-apps/usr/share/man/man1/micro_razers.1.dh-new debian/seqan-apps/usr/share/man/man1/micro_razers.1 mv debian/seqan-apps/usr/share/man/man1/pair_align.1.dh-new debian/seqan-apps/usr/share/man/man1/pair_align.1 chmod 0644 -- debian/seqan-apps/usr/share/man/man1/mason_methylation.1 debian/seqan-apps/usr/share/man/man1/micro_razers.1 debian/seqan-apps/usr/share/man/man1/pair_align.1 - mv debian/seqan-apps/usr/share/man/man1/stellar.1.dh-new debian/seqan-apps/usr/share/man/man1/stellar.1 - mv debian/seqan-apps/usr/share/man/man1/tree_recon.1.dh-new debian/seqan-apps/usr/share/man/man1/tree_recon.1 - mv debian/seqan-apps/usr/share/man/man1/yara_indexer.1.dh-new debian/seqan-apps/usr/share/man/man1/yara_indexer.1 - chmod 0644 -- debian/seqan-apps/usr/share/man/man1/stellar.1 debian/seqan-apps/usr/share/man/man1/tree_recon.1 debian/seqan-apps/usr/share/man/man1/yara_indexer.1 + mv debian/seqan-apps/usr/share/man/man1/razers.1.dh-new debian/seqan-apps/usr/share/man/man1/razers.1 + mv debian/seqan-apps/usr/share/man/man1/razers3.1.dh-new debian/seqan-apps/usr/share/man/man1/razers3.1 + mv debian/seqan-apps/usr/share/man/man1/sak.1.dh-new debian/seqan-apps/usr/share/man/man1/sak.1 + chmod 0644 -- debian/seqan-apps/usr/share/man/man1/razers.1 debian/seqan-apps/usr/share/man/man1/razers3.1 debian/seqan-apps/usr/share/man/man1/sak.1 mv debian/seqan-apps/usr/share/man/man1/alf.1.dh-new debian/seqan-apps/usr/share/man/man1/alf.1 mv debian/seqan-apps/usr/share/man/man1/gustaf.1.dh-new debian/seqan-apps/usr/share/man/man1/gustaf.1 mv debian/seqan-apps/usr/share/man/man1/insegt.1.dh-new debian/seqan-apps/usr/share/man/man1/insegt.1 @@ -128781,10 +128852,10 @@ cd debian/seqan-apps cd debian/libseqan2-dev chmod a-x usr/share/doc/libseqan2-dev/changelog usr/share/doc/libseqan2-dev/changelog.Debian - chmod a-x usr/share/doc/seqan-apps/alf/README usr/share/doc/seqan-apps/changelog usr/share/doc/seqan-apps/changelog.Debian usr/share/doc/seqan-apps/dfi/README usr/share/doc/seqan-apps/fiona/example/reads.fa usr/share/doc/seqan-apps/gustaf/README usr/share/doc/seqan-apps/gustaf/example/adeno.fa usr/share/doc/seqan-apps/gustaf/example/adeno_modified.fa usr/share/doc/seqan-apps/insegt/README usr/share/doc/seqan-apps/mason2/README.mason_methylation usr/share/doc/seqan-apps/mason2/README.mason_simulator usr/share/doc/seqan-apps/mason2/README.mason_variator usr/share/doc/seqan-apps/mason2/example/adeno_virus.fa usr/share/doc/seqan-apps/micro_razers/README usr/share/doc/seqan-apps/ngs_roi/README usr/share/doc/seqan-apps/ngs_roi/example/dmel.bed usr/share/doc/seqan-apps/ngs_roi/example/dmel.gtf usr/share/doc/seqan-apps/ngs_roi/example/example.bam usr/share/doc/seqan-apps/rabema/README usr/share/doc/seqan-apps/razers/README usr/share/doc/seqan-apps/razers3/README usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.A00 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.A01 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.B00 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.B01 usr/share/doc/seqan-apps/snp_store/README usr/share/doc/seqan-apps/snp_store/example/exampleGenome.fa usr/share/doc/seqan-apps/splazers/README usr/share/doc/seqan-apps/stellar/README usr/share/doc/seqan-apps/stellar/example/NC_001474.fasta usr/share/doc/seqan-apps/stellar/example/NC_001477.fasta usr/share/doc/seqan-apps/yara/README.rst usr/share/man/man1/alf.1 usr/share/man/man1/gustaf.1 usr/share/man/man1/insegt.1 usr/share/man/man1/mason_frag_sequencing.1 usr/share/man/man1/mason_genome.1 usr/share/man/man1/mason_materializer.1 usr/share/man/man1/mason_methylation.1 usr/share/man/man1/micro_razers.1 usr/share/man/man1/pair_align.1 usr/share/man/man1/rabema_build_gold_standard.1 usr/share/man/man1/rabema_evaluate.1 usr/share/man/man1/rabema_prepare_sam.1 usr/share/man/man1/razers.1 usr/share/man/man1/razers3.1 usr/share/man/man1/sak.1 usr/share/man/man1/seqan_tcoffee.1 usr/share/man/man1/snp_store.1 usr/share/man/man1/splazers.1 usr/share/man/man1/stellar.1 usr/share/man/man1/tree_recon.1 usr/share/man/man1/yara_indexer.1 usr/share/man/man1/yara_mapper.1 gzip -9nf usr/share/doc/libseqan2-dev/changelog usr/share/doc/libseqan2-dev/changelog.Debian - gzip -9nf usr/share/doc/seqan-apps/alf/README usr/share/doc/seqan-apps/changelog usr/share/doc/seqan-apps/changelog.Debian usr/share/doc/seqan-apps/dfi/README usr/share/doc/seqan-apps/fiona/example/reads.fa usr/share/doc/seqan-apps/gustaf/README usr/share/doc/seqan-apps/gustaf/example/adeno.fa usr/share/doc/seqan-apps/gustaf/example/adeno_modified.fa usr/share/doc/seqan-apps/insegt/README usr/share/doc/seqan-apps/mason2/README.mason_methylation usr/share/doc/seqan-apps/mason2/README.mason_simulator usr/share/doc/seqan-apps/mason2/README.mason_variator usr/share/doc/seqan-apps/mason2/example/adeno_virus.fa usr/share/doc/seqan-apps/micro_razers/README usr/share/doc/seqan-apps/ngs_roi/README usr/share/doc/seqan-apps/ngs_roi/example/dmel.bed usr/share/doc/seqan-apps/ngs_roi/example/dmel.gtf usr/share/doc/seqan-apps/ngs_roi/example/example.bam usr/share/doc/seqan-apps/rabema/README usr/share/doc/seqan-apps/razers/README usr/share/doc/seqan-apps/razers3/README usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.A00 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.A01 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.B00 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.B01 usr/share/doc/seqan-apps/snp_store/README usr/share/doc/seqan-apps/snp_store/example/exampleGenome.fa usr/share/doc/seqan-apps/splazers/README usr/share/doc/seqan-apps/stellar/README usr/share/doc/seqan-apps/stellar/example/NC_001474.fasta usr/share/doc/seqan-apps/stellar/example/NC_001477.fasta usr/share/doc/seqan-apps/yara/README.rst usr/share/man/man1/alf.1 usr/share/man/man1/gustaf.1 usr/share/man/man1/insegt.1 usr/share/man/man1/mason_frag_sequencing.1 usr/share/man/man1/mason_genome.1 usr/share/man/man1/mason_materializer.1 usr/share/man/man1/mason_methylation.1 usr/share/man/man1/micro_razers.1 usr/share/man/man1/pair_align.1 usr/share/man/man1/rabema_build_gold_standard.1 usr/share/man/man1/rabema_evaluate.1 usr/share/man/man1/rabema_prepare_sam.1 usr/share/man/man1/razers.1 usr/share/man/man1/razers3.1 usr/share/man/man1/sak.1 usr/share/man/man1/seqan_tcoffee.1 usr/share/man/man1/snp_store.1 usr/share/man/man1/splazers.1 usr/share/man/man1/stellar.1 usr/share/man/man1/tree_recon.1 usr/share/man/man1/yara_indexer.1 usr/share/man/man1/yara_mapper.1 cd '/build/seqan2-2.4.0+dfsg' + chmod a-x usr/share/doc/seqan-apps/alf/README usr/share/doc/seqan-apps/changelog usr/share/doc/seqan-apps/changelog.Debian usr/share/doc/seqan-apps/dfi/README usr/share/doc/seqan-apps/fiona/example/reads.fa usr/share/doc/seqan-apps/gustaf/README usr/share/doc/seqan-apps/gustaf/example/adeno.fa usr/share/doc/seqan-apps/gustaf/example/adeno_modified.fa usr/share/doc/seqan-apps/insegt/README usr/share/doc/seqan-apps/mason2/README.mason_methylation usr/share/doc/seqan-apps/mason2/README.mason_simulator usr/share/doc/seqan-apps/mason2/README.mason_variator usr/share/doc/seqan-apps/mason2/example/adeno_virus.fa usr/share/doc/seqan-apps/micro_razers/README usr/share/doc/seqan-apps/ngs_roi/README usr/share/doc/seqan-apps/ngs_roi/example/dmel.bed usr/share/doc/seqan-apps/ngs_roi/example/dmel.gtf usr/share/doc/seqan-apps/ngs_roi/example/example.bam usr/share/doc/seqan-apps/rabema/README usr/share/doc/seqan-apps/razers/README usr/share/doc/seqan-apps/razers3/README usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.A00 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.A01 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.B00 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.B01 usr/share/doc/seqan-apps/snp_store/README usr/share/doc/seqan-apps/snp_store/example/exampleGenome.fa usr/share/doc/seqan-apps/splazers/README usr/share/doc/seqan-apps/stellar/README usr/share/doc/seqan-apps/stellar/example/NC_001474.fasta usr/share/doc/seqan-apps/stellar/example/NC_001477.fasta usr/share/doc/seqan-apps/yara/README.rst usr/share/man/man1/alf.1 usr/share/man/man1/gustaf.1 usr/share/man/man1/insegt.1 usr/share/man/man1/mason_frag_sequencing.1 usr/share/man/man1/mason_genome.1 usr/share/man/man1/mason_materializer.1 usr/share/man/man1/mason_methylation.1 usr/share/man/man1/micro_razers.1 usr/share/man/man1/pair_align.1 usr/share/man/man1/rabema_build_gold_standard.1 usr/share/man/man1/rabema_evaluate.1 usr/share/man/man1/rabema_prepare_sam.1 usr/share/man/man1/razers.1 usr/share/man/man1/razers3.1 usr/share/man/man1/sak.1 usr/share/man/man1/seqan_tcoffee.1 usr/share/man/man1/snp_store.1 usr/share/man/man1/splazers.1 usr/share/man/man1/stellar.1 usr/share/man/man1/tree_recon.1 usr/share/man/man1/yara_indexer.1 usr/share/man/man1/yara_mapper.1 + gzip -9nf usr/share/doc/seqan-apps/alf/README usr/share/doc/seqan-apps/changelog usr/share/doc/seqan-apps/changelog.Debian usr/share/doc/seqan-apps/dfi/README usr/share/doc/seqan-apps/fiona/example/reads.fa usr/share/doc/seqan-apps/gustaf/README usr/share/doc/seqan-apps/gustaf/example/adeno.fa usr/share/doc/seqan-apps/gustaf/example/adeno_modified.fa usr/share/doc/seqan-apps/insegt/README usr/share/doc/seqan-apps/mason2/README.mason_methylation usr/share/doc/seqan-apps/mason2/README.mason_simulator usr/share/doc/seqan-apps/mason2/README.mason_variator usr/share/doc/seqan-apps/mason2/example/adeno_virus.fa usr/share/doc/seqan-apps/micro_razers/README usr/share/doc/seqan-apps/ngs_roi/README usr/share/doc/seqan-apps/ngs_roi/example/dmel.bed usr/share/doc/seqan-apps/ngs_roi/example/dmel.gtf usr/share/doc/seqan-apps/ngs_roi/example/example.bam usr/share/doc/seqan-apps/rabema/README usr/share/doc/seqan-apps/razers/README usr/share/doc/seqan-apps/razers3/README usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.A00 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.A01 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.B00 usr/share/doc/seqan-apps/sgip/example/iso_r01_m200.B01 usr/share/doc/seqan-apps/snp_store/README usr/share/doc/seqan-apps/snp_store/example/exampleGenome.fa usr/share/doc/seqan-apps/splazers/README usr/share/doc/seqan-apps/stellar/README usr/share/doc/seqan-apps/stellar/example/NC_001474.fasta usr/share/doc/seqan-apps/stellar/example/NC_001477.fasta usr/share/doc/seqan-apps/yara/README.rst usr/share/man/man1/alf.1 usr/share/man/man1/gustaf.1 usr/share/man/man1/insegt.1 usr/share/man/man1/mason_frag_sequencing.1 usr/share/man/man1/mason_genome.1 usr/share/man/man1/mason_materializer.1 usr/share/man/man1/mason_methylation.1 usr/share/man/man1/micro_razers.1 usr/share/man/man1/pair_align.1 usr/share/man/man1/rabema_build_gold_standard.1 usr/share/man/man1/rabema_evaluate.1 usr/share/man/man1/rabema_prepare_sam.1 usr/share/man/man1/razers.1 usr/share/man/man1/razers3.1 usr/share/man/man1/sak.1 usr/share/man/man1/seqan_tcoffee.1 usr/share/man/man1/snp_store.1 usr/share/man/man1/splazers.1 usr/share/man/man1/stellar.1 usr/share/man/man1/tree_recon.1 usr/share/man/man1/yara_indexer.1 usr/share/man/man1/yara_mapper.1 cd '/build/seqan2-2.4.0+dfsg' rm -f debian/seqan-apps.debhelper.log debian/rules override_dh_fixperms-arch @@ -129070,8 +129141,8 @@ dpkg-deb --root-owner-group --build debian/.debhelper/seqan-apps/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libseqan2-dev .. dpkg-deb: building package 'seqan-apps' in '../seqan-apps_2.4.0+dfsg-14_arm64.deb'. -dpkg-deb: building package 'libseqan2-dev' in '../libseqan2-dev_2.4.0+dfsg-14_all.deb'. dpkg-deb: building package 'seqan-apps-dbgsym' in '../seqan-apps-dbgsym_2.4.0+dfsg-14_arm64.deb'. +dpkg-deb: building package 'libseqan2-dev' in '../libseqan2-dev_2.4.0+dfsg-14_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../seqan2_2.4.0+dfsg-14_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -129079,12 +129150,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/22458/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/22458/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/23686 and its subdirectories -I: Current time: Wed Aug 24 19:17:03 -12 2022 -I: pbuilder-time-stamp: 1661411823 +I: removing directory /srv/workspace/pbuilder/22458 and its subdirectories +I: Current time: Fri Jul 23 23:50:03 +14 2021 +I: pbuilder-time-stamp: 1627033803