Diff of the two buildlogs: -- --- b1/build.log 2021-07-19 17:06:26.506813401 +0000 +++ b2/build.log 2021-07-19 17:41:21.804298533 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jul 19 04:48:55 -12 2021 -I: pbuilder-time-stamp: 1626713335 +I: Current time: Tue Jul 20 07:07:01 +14 2021 +I: pbuilder-time-stamp: 1626714421 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./kmc_3.1.1+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.xhKLsrPf/trustedkeys.kbx': General error -gpgv: Signature made Fri Jan 22 00:43:58 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.T9rjwwmy/trustedkeys.kbx': General error +gpgv: Signature made Sat Jan 23 02:43:58 2021 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kmc_3.1.1+dfsg-3.dsc @@ -34,135 +34,169 @@ dpkg-source: info: applying simde I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/26344/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/14535/tmp/hooks/D01_modify_environment starting +debug: Running on virt32a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/14535/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/14535/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='f177e2edf98a42dbbaf1951185a079b1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='26344' - PS1='# ' - PS2='> ' + INVOCATION_ID=e76e06ae1e3d4a9bb80ac6835953df2e + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=14535 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ddfKLovYtj/pbuilderrc_oyTA --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ddfKLovYtj/b1 --logfile b1/build.log kmc_3.1.1+dfsg-3.dsc' - SUDO_GID='114' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ddfKLovYtj/pbuilderrc_RpUY --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ddfKLovYtj/b2 --logfile b2/build.log --extrapackages usrmerge kmc_3.1.1+dfsg-3.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux jtx1b 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-7-armmp-lpae #1 SMP Debian 5.10.40-1 (2021-05-28) armv7l GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 17 21:27 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/26344/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 20 07:08 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 18 23:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/14535/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -269,7 +303,7 @@ Get: 55 http://deb.debian.org/debian bullseye/main armhf libbz2-dev armhf 1.0.8-4 [29.2 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf libsimde-dev all 0.7.2-4 [259 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [185 kB] -Fetched 25.2 MB in 14s (1856 kB/s) +Fetched 25.2 MB in 7s (3506 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -519,8 +553,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (435 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24119 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/kmc-3.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kmc_3.1.1+dfsg-3_source.changes +hostname: Name or service not known +I: Running cd /build/kmc-3.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kmc_3.1.1+dfsg-3_source.changes dpkg-buildpackage: info: source package kmc dpkg-buildpackage: info: source version 3.1.1+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -535,7 +606,7 @@ rm -rf /build/kmc-3.1.1+dfsg/debian/man dh_auto_clean -- install -d /build/kmc-3.1.1\+dfsg/debian/.debhelper/generated/_source/home - make -j3 clean + make -j4 clean make[2]: Entering directory '/build/kmc-3.1.1+dfsg' rm -f kmer_counter/*.o rm -f kmc_api/*.o @@ -569,7 +640,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/kmc-3.1.1+dfsg' dh_auto_build - make -j3 "INSTALL=install --strip-program=true" + make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/kmc-3.1.1+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/kmer_counter.cpp -o kmer_counter/kmer_counter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/mmer.cpp -o kmer_counter/mmer.o @@ -578,6 +649,7 @@ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/bkb_writer.cpp -o kmer_counter/bkb_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/cpu_info.cpp -o kmer_counter/cpu_info.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/bkb_reader.cpp -o kmer_counter/bkb_reader.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/fastq_reader.cpp -o kmer_counter/fastq_reader.o In file included from /usr/include/c++/10/set:60, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, @@ -587,26 +659,6 @@ /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::allocator >, long long unsigned int> >, std::_Select1st, std::allocator >, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long unsigned int> > > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/map:61, - from kmer_counter/queues.h:21, - from kmer_counter/params.h:15, - from kmer_counter/bkb_writer.h:14, - from kmer_counter/bkb_writer.cpp:12: -/usr/include/c++/10/bits/stl_map.h: In member function 'void CBigKmerBinWriter::Process()': -/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::allocator >, long long unsigned int> >, std::_Select1st, std::allocator >, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long unsigned int> > > >::const_iterator' changed in GCC 7.1 - 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 502 | std::tuple(__k), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 503 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::allocator >, long long unsigned int> >, std::_Select1st, std::allocator >, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long unsigned int> > > >::const_iterator' changed in GCC 7.1 - 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 502 | std::tuple(__k), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 503 | std::tuple<>()); - | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/set:60, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, @@ -671,9 +723,29 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/fastq_reader.cpp -o kmer_counter/fastq_reader.o +In file included from /usr/include/c++/10/map:61, + from kmer_counter/queues.h:21, + from kmer_counter/params.h:15, + from kmer_counter/bkb_writer.h:14, + from kmer_counter/bkb_writer.cpp:12: +/usr/include/c++/10/bits/stl_map.h: In member function 'void CBigKmerBinWriter::Process()': +/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::allocator >, long long unsigned int> >, std::_Select1st, std::allocator >, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long unsigned int> > > >::const_iterator' changed in GCC 7.1 + 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 502 | std::tuple(__k), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 503 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::allocator >, long long unsigned int> >, std::_Select1st, std::allocator >, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long unsigned int> > > >::const_iterator' changed in GCC 7.1 + 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 502 | std::tuple(__k), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 503 | std::tuple<>()); + | ~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/timer.cpp -o kmer_counter/timer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/develop.cpp -o kmer_counter/develop.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/kb_completer.cpp -o kmer_counter/kb_completer.o In file included from /usr/include/c++/10/set:60, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, @@ -729,8 +801,8 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/kb_completer.cpp -o kmer_counter/kb_completer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/kb_storer.cpp -o kmer_counter/kb_storer.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/kmer.cpp -o kmer_counter/kmer.o In file included from /usr/include/c++/10/set:60, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, @@ -740,6 +812,7 @@ /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/splitter.cpp -o kmer_counter/splitter.o In file included from /usr/include/c++/10/map:61, from kmer_counter/queues.h:21, from kmer_counter/params.h:15, @@ -788,8 +861,7 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/kmer.cpp -o kmer_counter/kmer.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/splitter.cpp -o kmer_counter/splitter.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/kb_collector.cpp -o kmer_counter/kb_collector.o In file included from /usr/include/c++/10/set:60, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, @@ -855,7 +927,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/kb_collector.cpp -o kmer_counter/kb_collector.o In file included from /usr/include/c++/10/set:60, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, @@ -866,6 +937,7 @@ /usr/include/c++/10/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/raduls_sse2.cpp -o kmer_counter/raduls_sse2.o In file included from /usr/include/c++/10/map:61, from kmer_counter/queues.h:21, from kmer_counter/params.h:15, @@ -1000,7 +1072,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmer_counter/raduls_sse2.cpp -o kmer_counter/raduls_sse2.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_dump/kmc_dump.cpp -o kmc_dump/kmc_dump.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_api/mmer.cpp -o kmc_api/mmer.o @@ -1008,6 +1079,52 @@ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_api/kmer_api.cpp -o kmc_api/kmer_api.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kmc_header.cpp -o kmc_tools/kmc_header.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o +In file included from /usr/include/c++/10/vector:72, + from kmc_tools/operations.h:24, + from kmc_tools/expression_node.h:14, + from kmc_tools/parser.h:14, + from kmc_tools/parameters_parser.h:15, + from kmc_tools/parameters_parser.cpp:12: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {CTransformOutputDesc::OpType&}; _Tp = CTransformOutputDesc; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'bool CParametersParser::read_output_for_transform()': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/parameters_parser.cpp:426:1: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | } + | ^ +In file included from /usr/include/c++/10/vector:72, + from kmc_tools/operations.h:24, + from kmc_tools/expression_node.h:14, + from kmc_tools/parser.h:14, + from kmc_tools/parameters_parser.h:15, + from kmc_tools/parameters_parser.cpp:12: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {CSimpleOutputDesc::OpType&}; _Tp = CSimpleOutputDesc; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In member function 'bool CParametersParser::read_output_desc_for_simple()': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {CKMC_header}; _Tp = CKMC_header; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'bool CParametersParser::validate_input_dbs()': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/parser.cpp -o kmc_tools/parser.o In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /usr/include/c++/10/ext/algorithm:61, @@ -1050,6 +1167,29 @@ /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In file included from /usr/include/c++/10/queue:62, + from kmer_counter/raduls_impl.h:15, + from kmer_counter/raduls_sse2.cpp:12: +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<1>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<1>*, long long unsigned int>, std::tuple*, CKmer<1>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 + 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<1>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<1>*, long long unsigned int>, std::tuple*, CKmer<1>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<2>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<2>*, long long unsigned int>, std::tuple*, CKmer<2>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<2>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<2>*, long long unsigned int>, std::tuple*, CKmer<2>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<3>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<3>*, long long unsigned int>, std::tuple*, CKmer<3>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<3>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<3>*, long long unsigned int>, std::tuple*, CKmer<3>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<4>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<4>*, long long unsigned int>, std::tuple*, CKmer<4>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<4>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<4>*, long long unsigned int>, std::tuple*, CKmer<4>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<5>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<5>*, long long unsigned int>, std::tuple*, CKmer<5>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ExpandKxmersBoth<3>::&, const std::pair&)> >]': /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 @@ -1057,6 +1197,8 @@ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<5>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<5>*, long long unsigned int>, std::tuple*, CKmer<5>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ExpandKxmersBoth<1>::&, const std::pair&)> >]': /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 @@ -1081,6 +1223,247 @@ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<6>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<6>*, long long unsigned int>, std::tuple*, CKmer<6>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<6>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<6>*, long long unsigned int>, std::tuple*, CKmer<6>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 +In file included from kmc_tools/kmc_tools.cpp:17: +kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 8]': +kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 97 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 101 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 136 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 137 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h: In lambda function: +kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 53 | fread(tmp, 1, record_size, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<7>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<7>*, long long unsigned int>, std::tuple*, CKmer<7>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<7>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<7>*, long long unsigned int>, std::tuple*, CKmer<7>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 +kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 7]': +kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 97 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 101 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 136 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 137 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h: In lambda function: +kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 53 | fread(tmp, 1, record_size, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<8>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<8>*, long long unsigned int>, std::tuple*, CKmer<8>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 +kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 6]': +kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 97 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 101 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 136 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 137 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h: In lambda function: +kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 53 | fread(tmp, 1, record_size, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<8>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<8>*, long long unsigned int>, std::tuple*, CKmer<8>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 +kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 5]': +kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 97 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 101 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 136 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 137 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h: In lambda function: +kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 53 | fread(tmp, 1, record_size, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from kmer_counter/raduls_impl.h:20, + from kmer_counter/raduls_sse2.cpp:12: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<2>*, long long unsigned int>, std::tuple*, CKmer<2>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 + 1839 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 +kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 4]': +kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 97 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 101 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 136 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 137 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h: In lambda function: +kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 53 | fread(tmp, 1, record_size, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<1>*, long long unsigned int>, std::tuple*, CKmer<1>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<6>*, long long unsigned int>, std::tuple*, CKmer<6>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 +kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 3]': +kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 97 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 101 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 136 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 137 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h: In lambda function: +kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 53 | fread(tmp, 1, record_size, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<7>*, long long unsigned int>, std::tuple*, CKmer<7>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<8>*, long long unsigned int>, std::tuple*, CKmer<8>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 +kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 2]': +kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 97 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 101 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 136 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 137 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h: In lambda function: +kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 53 | fread(tmp, 1, record_size, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<8>*, long long unsigned int>, std::tuple*, CKmer<8>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<2>*, long long unsigned int>, std::tuple*, CKmer<2>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 +kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 1]': +kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 97 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 101 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 136 | fread(&lower, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 137 | fread(&upper, sizeof(uint64), 1, prefix_file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/check_kmer.h: In lambda function: +kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 53 | fread(tmp, 1, record_size, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<7>*, long long unsigned int>, std::tuple*, CKmer<7>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<5>*, long long unsigned int>, std::tuple*, CKmer<5>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<3>*, long long unsigned int>, std::tuple*, CKmer<3>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<4>*, long long unsigned int>, std::tuple*, CKmer<4>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<4>*, long long unsigned int>, std::tuple*, CKmer<4>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<3>*, long long unsigned int>, std::tuple*, CKmer<3>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<6>*, long long unsigned int>, std::tuple*, CKmer<6>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<5>*, long long unsigned int>, std::tuple*, CKmer<5>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<1>*, long long unsigned int>, std::tuple*, CKmer<1>*, long long unsigned int>)> >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 In file included from /usr/include/c++/10/set:60, from kmer_counter/queues.h:20, from kmer_counter/params.h:15, @@ -1247,39 +1630,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/queue:62, - from kmer_counter/raduls_impl.h:15, - from kmer_counter/raduls_sse2.cpp:12: -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<1>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<1>*, long long unsigned int>, std::tuple*, CKmer<1>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 - 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<1>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<1>*, long long unsigned int>, std::tuple*, CKmer<1>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<2>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<2>*, long long unsigned int>, std::tuple*, CKmer<2>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<2>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<2>*, long long unsigned int>, std::tuple*, CKmer<2>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<3>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<3>*, long long unsigned int>, std::tuple*, CKmer<3>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<3>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<3>*, long long unsigned int>, std::tuple*, CKmer<3>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<4>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<4>*, long long unsigned int>, std::tuple*, CKmer<4>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<4>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<4>*, long long unsigned int>, std::tuple*, CKmer<4>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<5>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<5>*, long long unsigned int>, std::tuple*, CKmer<5>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<5>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<5>*, long long unsigned int>, std::tuple*, CKmer<5>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<6>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<6>*, long long unsigned int>, std::tuple*, CKmer<6>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<6>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<6>*, long long unsigned int>, std::tuple*, CKmer<6>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<7>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<7>*, long long unsigned int>, std::tuple*, CKmer<7>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<7>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<7>*, long long unsigned int>, std::tuple*, CKmer<7>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 /usr/include/c++/10/bits/stl_map.h: In member function 'std::vector > CBinDesc::get_sorted_req_sizes(uint32, uint64, uint32, int64, int64, uint32)': /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, @@ -1309,280 +1659,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<8>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<8>*, long long unsigned int>, std::tuple*, CKmer<8>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >; _Distance = int; _Tp = std::tuple*, CKmer<8>*, long long unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<8>*, long long unsigned int>, std::tuple*, CKmer<8>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 -In file included from /usr/include/c++/10/algorithm:62, - from kmer_counter/raduls_impl.h:20, - from kmer_counter/raduls_sse2.cpp:12: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<2>*, long long unsigned int>, std::tuple*, CKmer<2>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 - 1839 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<1>*, long long unsigned int>, std::tuple*, CKmer<1>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<6>*, long long unsigned int>, std::tuple*, CKmer<6>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<7>*, long long unsigned int>, std::tuple*, CKmer<7>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<8>*, long long unsigned int>, std::tuple*, CKmer<8>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<8>*, long long unsigned int>, std::tuple*, CKmer<8>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<8>*, long long unsigned int>*, std::vector*, CKmer<8>*, long long unsigned int>, std::allocator*, CKmer<8>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<2>*, long long unsigned int>, std::tuple*, CKmer<2>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<7>*, long long unsigned int>, std::tuple*, CKmer<7>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<5>*, long long unsigned int>, std::tuple*, CKmer<5>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<3>*, long long unsigned int>, std::tuple*, CKmer<3>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<4>*, long long unsigned int>, std::tuple*, CKmer<4>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<4>*, long long unsigned int>, std::tuple*, CKmer<4>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<3>*, long long unsigned int>, std::tuple*, CKmer<3>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<6>*, long long unsigned int>, std::tuple*, CKmer<6>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<5>*, long long unsigned int>, std::tuple*, CKmer<5>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, long long int>::*, CKmer<1>*, long long unsigned int>, std::tuple*, CKmer<1>*, long long unsigned int>)> >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 -In file included from /usr/include/c++/10/vector:72, - from kmer_counter/kmer_counter.cpp:14: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from kmc_tools/kmc_tools.cpp:17: -kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 8]': -kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 97 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 101 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 136 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 137 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In lambda function: -kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 53 | fread(tmp, 1, record_size, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmer_counter/defs.h:113, - from kmer_counter/kmc.h:14, - from kmer_counter/kmer_counter.cpp:18: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1945 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 7]': -kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 97 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 101 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 136 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 137 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In lambda function: -kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 53 | fread(tmp, 1, record_size, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/10/bits/stl_algo.h:1969:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1969 | __sort(_RandomAccessIterator __first, _RandomAccessIterator __last, - | ^~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1969:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 6]': -kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 97 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 101 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 136 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 137 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In lambda function: -kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 53 | fread(tmp, 1, record_size, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 5]': -kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 97 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 101 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 136 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 137 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In lambda function: -kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 53 | fread(tmp, 1, record_size, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 4]': -kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 97 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 101 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 136 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 137 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In lambda function: -kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 53 | fread(tmp, 1, record_size, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 3]': -kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 97 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 101 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 136 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 137 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In lambda function: -kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 53 | fread(tmp, 1, record_size, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 2]': -kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 97 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 101 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 136 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 137 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In lambda function: -kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 53 | fread(tmp, 1, record_size, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 1]': -kmc_tools/check_kmer.h:97:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 97 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:101:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 101 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:131:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:136:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 136 | fread(&lower, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h:137:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 137 | fread(&upper, sizeof(uint64), 1, prefix_file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/check_kmer.h: In lambda function: -kmc_tools/check_kmer.h:53:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 53 | fread(tmp, 1, record_size, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/queue:61, from kmer_counter/raduls_impl.h:15, @@ -1646,49 +1722,6 @@ 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, - from kmer_counter/kmer_counter.cpp:14: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmer_counter/defs.h:113, - from kmer_counter/kmc.h:14, - from kmer_counter/kmer_counter.cpp:18: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1945 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from kmer_counter/kmer_counter.cpp:14: -/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 7]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmer_counter/defs.h:113, - from kmer_counter/kmc.h:14, - from kmer_counter/kmer_counter.cpp:18: -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/queue:61, from kmer_counter/raduls_impl.h:15, from kmer_counter/raduls_sse2.cpp:12: @@ -1696,30 +1729,6 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from kmer_counter/kmer_counter.cpp:14: -/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 8]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmer_counter/defs.h:113, - from kmer_counter/kmc.h:14, - from kmer_counter/kmer_counter.cpp:18: -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from kmer_counter/raduls_impl.h:20, from kmer_counter/raduls_sse2.cpp:12: @@ -1731,30 +1740,6 @@ /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from kmer_counter/kmer_counter.cpp:14: -/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 1]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmer_counter/defs.h:113, - from kmer_counter/kmc.h:14, - from kmer_counter/kmer_counter.cpp:18: -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<6>*, long long unsigned int>, std::tuple*, CKmer<6>*, long long unsigned int>)> >]': /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, @@ -1764,30 +1749,6 @@ 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, - from kmer_counter/kmer_counter.cpp:14: -/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 6]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmer_counter/defs.h:113, - from kmer_counter/kmc.h:14, - from kmer_counter/kmer_counter.cpp:18: -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/queue:61, from kmer_counter/raduls_impl.h:15, from kmer_counter/raduls_sse2.cpp:12: @@ -1870,8 +1831,12 @@ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from kmer_counter/kmer_counter.cpp:14: -/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 5]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, @@ -1879,17 +1844,30 @@ from kmer_counter/defs.h:113, from kmer_counter/kmc.h:14, from kmer_counter/kmer_counter.cpp:18: -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1945 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/10/bits/stl_algo.h:1969:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1969 | __sort(_RandomAccessIterator __first, _RandomAccessIterator __last, + | ^~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1969:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, @@ -1911,6 +1889,7 @@ /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<4>*, long long unsigned int>, std::tuple*, CKmer<4>*, long long unsigned int>)> >]': /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, @@ -1973,6 +1952,95 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<7>*, long long unsigned int>*, std::vector*, CKmer<7>*, long long unsigned int>, std::allocator*, CKmer<7>*, long long unsigned int> > > >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmc_tools/../kmc_api/kmer_defs.h:38, + from kmc_tools/../kmc_api/mmer.h:13, + from kmc_tools/check_kmer.h:16, + from kmc_tools/kmc_tools.cpp:17: +/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from kmer_counter/kmer_counter.cpp:14: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmer_counter/defs.h:113, + from kmer_counter/kmc.h:14, + from kmer_counter/kmer_counter.cpp:18: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1945 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmc_tools/../kmc_api/kmer_defs.h:38, + from kmc_tools/../kmc_api/mmer.h:13, + from kmc_tools/check_kmer.h:16, + from kmc_tools/kmc_tools.cpp:17: +/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1839 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +In file included from /usr/include/c++/10/vector:72, + from kmer_counter/kmer_counter.cpp:14: +/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 7]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmer_counter/defs.h:113, + from kmer_counter/kmc.h:14, + from kmer_counter/kmer_counter.cpp:18: +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from kmer_counter/kmer_counter.cpp:14: +/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 8]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmer_counter/defs.h:113, + from kmer_counter/kmc.h:14, + from kmer_counter/kmer_counter.cpp:18: +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/queue:61, from kmer_counter/raduls_impl.h:15, @@ -1981,6 +2049,30 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from kmer_counter/kmer_counter.cpp:14: +/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 1]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmer_counter/defs.h:113, + from kmer_counter/kmc.h:14, + from kmer_counter/kmer_counter.cpp:18: +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from kmer_counter/raduls_impl.h:20, from kmer_counter/raduls_sse2.cpp:12: @@ -1992,6 +2084,30 @@ /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from kmer_counter/kmer_counter.cpp:14: +/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 6]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmer_counter/defs.h:113, + from kmer_counter/kmc.h:14, + from kmer_counter/kmer_counter.cpp:18: +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, int>::*, CKmer<3>*, long long unsigned int>, std::tuple*, CKmer<3>*, long long unsigned int>)> >]': /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, @@ -2027,10 +2143,6 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<6>*, long long unsigned int>*, std::vector*, CKmer<6>*, long long unsigned int>, std::allocator*, CKmer<6>*, long long unsigned int> > > >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 1]': -/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/queue:61, from kmer_counter/raduls_impl.h:15, @@ -2059,6 +2171,30 @@ 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, + from kmer_counter/kmer_counter.cpp:14: +/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 5]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmer_counter/defs.h:113, + from kmer_counter/kmc.h:14, + from kmer_counter/kmer_counter.cpp:18: +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/queue:61, from kmer_counter/raduls_impl.h:15, from kmer_counter/raduls_sse2.cpp:12: @@ -2112,32 +2248,6 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<5>*, long long unsigned int>*, std::vector*, CKmer<5>*, long long unsigned int>, std::allocator*, CKmer<5>*, long long unsigned int> > > >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 8]': -/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmc_tools/../kmc_api/kmer_defs.h:38, - from kmc_tools/../kmc_api/mmer.h:13, - from kmc_tools/check_kmer.h:16, - from kmc_tools/kmc_tools.cpp:17: -/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmc_tools/../kmc_api/kmer_defs.h:38, - from kmc_tools/../kmc_api/mmer.h:13, - from kmc_tools/check_kmer.h:16, - from kmc_tools/kmc_tools.cpp:17: -/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1839 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/queue:61, from kmer_counter/raduls_impl.h:15, @@ -2219,6 +2329,10 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 1]': +/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/queue:61, from kmer_counter/raduls_impl.h:15, @@ -2246,10 +2360,6 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<4>*, long long unsigned int>*, std::vector*, CKmer<4>*, long long unsigned int>, std::allocator*, CKmer<4>*, long long unsigned int> > > >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 7]': -/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/queue:61, from kmer_counter/raduls_impl.h:15, @@ -2277,6 +2387,10 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<3>*, long long unsigned int>*, std::vector*, CKmer<3>*, long long unsigned int>, std::allocator*, CKmer<3>*, long long unsigned int> > > >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 8]': +/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/queue:61, from kmer_counter/raduls_impl.h:15, @@ -2331,7 +2445,13 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 6]': +In file included from /usr/include/c++/10/vector:72, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = CTransformOutputDesc; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 171 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 7]': /usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2362,30 +2482,7 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<2>*, long long unsigned int>*, std::vector*, CKmer<2>*, long long unsigned int>, std::allocator*, CKmer<2>*, long long unsigned int> > > >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from kmer_counter/kmer_counter.cpp:14: -/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 4]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmer_counter/defs.h:113, - from kmer_counter/kmc.h:14, - from kmer_counter/kmer_counter.cpp:18: -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/queue:61, from kmer_counter/raduls_impl.h:15, @@ -2440,13 +2537,7 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, CKmer<1>*, long long unsigned int>*, std::vector*, CKmer<1>*, long long unsigned int>, std::allocator*, CKmer<1>*, long long unsigned int> > > >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = CTransformOutputDesc; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:171:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 171 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 5]': +/usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 6]': /usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2488,7 +2579,7 @@ | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from kmer_counter/kmer_counter.cpp:14: -/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 3]': +/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 4]': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2510,54 +2601,15 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 4]': +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o +/usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 5]': /usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 7]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 1]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 8]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 6]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o -/usr/include/c++/10/bits/vector.tcc: In function 'bool CTools::Process() [with unsigned int SIZE = 8]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmc_tools/../kmc_api/kmer_defs.h:38, - from kmc_tools/../kmc_api/mmer.h:13, - from kmc_tools/check_kmer.h:16, - from kmc_tools/kmc_tools.cpp:17: -/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1431 | { return _M_erase(begin() + (__position - cbegin())); } - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o In file included from /usr/include/c++/10/vector:72, from kmer_counter/kmer_counter.cpp:14: -/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 2]': +/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 3]': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2579,224 +2631,45 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kmc_tools.cpp:458:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 458 | } - | ^ -In file included from /usr/include/c++/10/vector:72, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 5]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o -/usr/include/c++/10/bits/vector.tcc: In function 'bool CTools::Process() [with unsigned int SIZE = 7]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmc_tools/../kmc_api/kmer_defs.h:38, - from kmc_tools/../kmc_api/mmer.h:13, - from kmc_tools/check_kmer.h:16, - from kmc_tools/kmc_tools.cpp:17: -/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1431 | { return _M_erase(begin() + (__position - cbegin())); } - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kmc_tools.cpp:458:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 458 | } - | ^ -In file included from /usr/include/c++/10/vector:72, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 4]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In function 'bool CTools::Process() [with unsigned int SIZE = 6]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmc_tools/../kmc_api/kmer_defs.h:38, - from kmc_tools/../kmc_api/mmer.h:13, - from kmc_tools/check_kmer.h:16, - from kmc_tools/kmc_tools.cpp:17: -/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1431 | { return _M_erase(begin() + (__position - cbegin())); } - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kmc_tools.cpp:458:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 458 | } - | ^ -/usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 3]': -/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 3]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from kmc_tools/operations.h:24, - from kmc_tools/expression_node.h:14, - from kmc_tools/parser.h:14, - from kmc_tools/parameters_parser.h:15, - from kmc_tools/parameters_parser.cpp:12: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {CTransformOutputDesc::OpType&}; _Tp = CTransformOutputDesc; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'bool CParametersParser::read_output_for_transform()': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/parameters_parser.cpp:426:1: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | } - | ^ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o In file included from /usr/include/c++/10/vector:72, - from kmc_tools/operations.h:24, - from kmc_tools/expression_node.h:14, - from kmc_tools/parser.h:14, - from kmc_tools/parameters_parser.h:15, - from kmc_tools/parameters_parser.cpp:12: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {CSimpleOutputDesc::OpType&}; _Tp = CSimpleOutputDesc; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + from kmc_tools/percent_progress.h:15, + from kmc_tools/percent_progress.cpp:12: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/vector.tcc: In member function 'bool CParametersParser::read_output_desc_for_simple()': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In member function 'uint32 CPercentProgress::RegisterItem(const string&, uint64)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {CKMC_header}; _Tp = CKMC_header; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'bool CParametersParser::validate_input_dbs()': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/parser.cpp -o kmc_tools/parser.o -/usr/include/c++/10/bits/vector.tcc: In function 'bool CTools::Process() [with unsigned int SIZE = 5]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmc_tools/../kmc_api/kmer_defs.h:38, - from kmc_tools/../kmc_api/mmer.h:13, - from kmc_tools/check_kmer.h:16, - from kmc_tools/kmc_tools.cpp:17: -/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1431 | { return _M_erase(begin() + (__position - cbegin())); } - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kmc_tools.cpp:458:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 458 | } - | ^ -In file included from /usr/include/c++/10/vector:72, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 2]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In function 'bool CTools::Process() [with unsigned int SIZE = 4]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmc_tools/../kmc_api/kmer_defs.h:38, - from kmc_tools/../kmc_api/mmer.h:13, - from kmc_tools/check_kmer.h:16, - from kmc_tools/kmc_tools.cpp:17: -/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1431 | { return _M_erase(begin() + (__position - cbegin())); } - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kmc_tools.cpp:458:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 458 | } - | ^ -In file included from /usr/include/c++/10/vector:72, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/vector.tcc: In function 'bool CTools::Process() [with unsigned int SIZE = 3]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmc_tools/../kmc_api/kmer_defs.h:38, - from kmc_tools/../kmc_api/mmer.h:13, - from kmc_tools/check_kmer.h:16, - from kmc_tools/kmc_tools.cpp:17: -/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1431 | { return _M_erase(begin() + (__position - cbegin())); } - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kmc_tools.cpp:458:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 458 | } - | ^ -In file included from /usr/include/c++/10/vector:72, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/vector.tcc: In function 'bool CTools::Process() [with unsigned int SIZE = 2]': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In member function 'uint32 CPercentProgress::RegisterItem(uint64)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /usr/include/c++/10/ext/algorithm:61, - from kmc_tools/../kmc_api/kmer_defs.h:38, - from kmc_tools/../kmc_api/mmer.h:13, - from kmc_tools/check_kmer.h:16, - from kmc_tools/kmc_tools.cpp:17: -/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o +ranlib libkmc.a +mkdir -p bin +g++ -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -o bin/kmc_dump kmc_dump/nc_utils.o kmc_dump/kmc_dump.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-z,relro -Wl,-z,now -lm -O3 -lpthread -std=c++11 -lz -lbz2 +/usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 4]': +/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1431 | { return _M_erase(begin() + (__position - cbegin())); } - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kmc_tools.cpp:458:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 458 | } - | ^ In file included from /usr/include/c++/10/vector:72, - from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/vector.tcc: In function 'int main(int, char**)': + from kmer_counter/kmer_counter.cpp:14: +/usr/include/c++/10/bits/vector.tcc: In member function 'void CKMC::SetThreads1Stage() [with unsigned int SIZE = 2]': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from /usr/include/c++/10/ext/algorithm:61, - from kmc_tools/../kmc_api/kmer_defs.h:38, - from kmc_tools/../kmc_api/mmer.h:13, - from kmc_tools/check_kmer.h:16, - from kmc_tools/kmc_tools.cpp:17: + from kmer_counter/defs.h:113, + from kmer_counter/kmc.h:14, + from kmer_counter/kmer_counter.cpp:18: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -2810,15 +2683,32 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, +In file included from /usr/include/c++/10/vector:72, from kmc_tools/kmc_tools.cpp:13: -/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1431 | { return _M_erase(begin() + (__position - cbegin())); } - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_tools/kmc_tools.cpp:574:1: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 574 | } - | ^ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::tuple}; _Tp = std::tuple; _Alloc = std::allocator >]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 3]': +/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 7]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 1]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 8]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 6]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In member function 'bool CKMC::Process() [with unsigned int SIZE = 2]': /usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); @@ -2928,7 +2818,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o /usr/include/c++/10/bits/stl_map.h: In member function 'void CKmerBinReader::ProcessBins() [with unsigned int SIZE = 4]': /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, @@ -2979,6 +2868,24 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In function 'bool CTools::Process() [with unsigned int SIZE = 8]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmc_tools/../kmc_api/kmer_defs.h:38, + from kmc_tools/../kmc_api/mmer.h:13, + from kmc_tools/check_kmer.h:16, + from kmc_tools/kmc_tools.cpp:17: +/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1431 | { return _M_erase(begin() + (__position - cbegin())); } + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_map.h: In member function 'void CKmerBinReader::ProcessBins() [with unsigned int SIZE = 5]': /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, @@ -3029,6 +2936,9 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +kmc_tools/kmc_tools.cpp:458:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 458 | } + | ^ /usr/include/c++/10/bits/stl_map.h: In member function 'void CKmerBinReader::ProcessBins() [with unsigned int SIZE = 6]': /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, @@ -3079,7 +2989,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o /usr/include/c++/10/bits/stl_map.h: In member function 'void CKmerBinReader::ProcessBins() [with unsigned int SIZE = 7]': /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, @@ -3130,8 +3039,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o /usr/include/c++/10/bits/stl_map.h: In member function 'void CKmerBinReader::ProcessBins() [with unsigned int SIZE = 8]': /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, @@ -3183,28 +3090,11 @@ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, - from kmc_tools/percent_progress.h:15, - from kmc_tools/percent_progress.cpp:12: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'uint32 CPercentProgress::RegisterItem(const string&, uint64)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >, long long unsigned int&}; _Tp = CPercentProgress::CDisplayItem; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'uint32 CPercentProgress::RegisterItem(uint64)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 5]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -ranlib libkmc.a -mkdir -p bin -g++ -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -o bin/kmc_dump kmc_dump/nc_utils.o kmc_dump/kmc_dump.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-z,relro -Wl,-z,now -lm -O3 -lpthread -std=c++11 -lz -lbz2 /usr/include/c++/10/bits/stl_map.h: In member function 'void CKmerBinReader::ProcessBins() [with unsigned int SIZE = 1]': /usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type 'std::_Rb_tree, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> >, std::_Select1st, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > >, std::less, std::allocator, std::allocator >, long long int, long long unsigned int, unsigned int, unsigned int, CMemDiskFile*, long long unsigned int, long long unsigned int> > > >::const_iterator' changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, @@ -3255,6 +3145,187 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In function 'bool CTools::Process() [with unsigned int SIZE = 7]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmc_tools/../kmc_api/kmer_defs.h:38, + from kmc_tools/../kmc_api/mmer.h:13, + from kmc_tools/check_kmer.h:16, + from kmc_tools/kmc_tools.cpp:17: +/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1431 | { return _M_erase(begin() + (__position - cbegin())); } + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kmc_tools.cpp:458:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 458 | } + | ^ +In file included from /usr/include/c++/10/vector:72, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 4]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In function 'bool CTools::Process() [with unsigned int SIZE = 6]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmc_tools/../kmc_api/kmer_defs.h:38, + from kmc_tools/../kmc_api/mmer.h:13, + from kmc_tools/check_kmer.h:16, + from kmc_tools/kmc_tools.cpp:17: +/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1431 | { return _M_erase(begin() + (__position - cbegin())); } + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kmc_tools.cpp:458:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 458 | } + | ^ +In file included from /usr/include/c++/10/vector:72, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 3]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In function 'bool CTools::Process() [with unsigned int SIZE = 5]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmc_tools/../kmc_api/kmer_defs.h:38, + from kmc_tools/../kmc_api/mmer.h:13, + from kmc_tools/check_kmer.h:16, + from kmc_tools/kmc_tools.cpp:17: +/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1431 | { return _M_erase(begin() + (__position - cbegin())); } + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kmc_tools.cpp:458:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 458 | } + | ^ +In file included from /usr/include/c++/10/vector:72, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/vector.tcc: In member function 'void CBinBufProvider::init(std::vector >&) [with unsigned int SIZE = 2]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In function 'bool CTools::Process() [with unsigned int SIZE = 4]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmc_tools/../kmc_api/kmer_defs.h:38, + from kmc_tools/../kmc_api/mmer.h:13, + from kmc_tools/check_kmer.h:16, + from kmc_tools/kmc_tools.cpp:17: +/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1431 | { return _M_erase(begin() + (__position - cbegin())); } + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kmc_tools.cpp:458:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 458 | } + | ^ +In file included from /usr/include/c++/10/vector:72, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/vector.tcc: In function 'bool CTools::Process() [with unsigned int SIZE = 3]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmc_tools/../kmc_api/kmer_defs.h:38, + from kmc_tools/../kmc_api/mmer.h:13, + from kmc_tools/check_kmer.h:16, + from kmc_tools/kmc_tools.cpp:17: +/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1431 | { return _M_erase(begin() + (__position - cbegin())); } + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kmc_tools.cpp:458:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 458 | } + | ^ +In file included from /usr/include/c++/10/vector:72, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/vector.tcc: In function 'bool CTools::Process() [with unsigned int SIZE = 2]': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmc_tools/../kmc_api/kmer_defs.h:38, + from kmc_tools/../kmc_api/mmer.h:13, + from kmc_tools/check_kmer.h:16, + from kmc_tools/kmc_tools.cpp:17: +/usr/include/c++/10/bits/stl_algo.h:4894:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 4894 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_comp_iter(__comp)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1431 | { return _M_erase(begin() + (__position - cbegin())); } + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kmc_tools.cpp:458:2: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 458 | } + | ^ +In file included from /usr/include/c++/10/vector:72, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/vector.tcc: In function 'int main(int, char**)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /usr/include/c++/10/ext/algorithm:61, + from kmc_tools/../kmc_api/kmer_defs.h:38, + from kmc_tools/../kmc_api/mmer.h:13, + from kmc_tools/check_kmer.h:16, + from kmc_tools/kmc_tools.cpp:17: +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from kmc_tools/kmc_tools.cpp:13: +/usr/include/c++/10/bits/stl_vector.h:1431:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1431 | { return _M_erase(begin() + (__position - cbegin())); } + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_tools/kmc_tools.cpp:574:1: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 574 | } + | ^ mkdir -p bin g++ -g -O2 -fdebug-prefix-map=/build/kmc-3.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -o bin/kmc_tools kmc_tools/kmc_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-z,relro -Wl,-z,now -lm -O3 -lpthread -std=c++14 -lz -lbz2 In file included from /usr/include/c++/10/algorithm:62, @@ -3967,7 +4038,7 @@ make[2]: Leaving directory '/build/kmc-3.1.1+dfsg' make[1]: Leaving directory '/build/kmc-3.1.1+dfsg' dh_auto_test - rm -fr -- /tmp/dh-xdg-rundir-mMJHRa89 + rm -fr -- /tmp/dh-xdg-rundir-xEJsSKap create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars @@ -4022,25 +4093,27 @@ install -p -m0644 ./debian/man/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 install -p -m0644 ./debian/man/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 install -p -m0644 ./debian/man/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools.1 - mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 - mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1 mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 mv debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 mv debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 + mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 + mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 make[1]: Leaving directory '/build/kmc-3.1.1+dfsg' dh_perl dh_link @@ -4048,24 +4121,24 @@ dh_compress cd debian/kmc cd debian/libkmc-dev + chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 chmod a-x usr/share/doc/libkmc-dev/changelog.Debian + gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 gzip -9nf usr/share/doc/libkmc-dev/changelog.Debian - chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 cd '/build/kmc-3.1.1+dfsg' - gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 cd '/build/kmc-3.1.1+dfsg' dh_fixperms find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libkmc-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/doc -type f -a -true -a ! -regex 'debian/kmc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libkmc-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/kmc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libkmc-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/kmc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/kmc/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/kmc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/kmc/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a @@ -4074,11 +4147,6 @@ objcopy --compress-debug-sections debian/kmc/usr/lib/debug/.dwz/arm-linux-gnueabihf/kmc.debug dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/arm-linux-gnueabihf/libkmc.a - install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3d - objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3d/c866fff77d4ce0aacfef9a376439d5218d6ac6.debug - chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3d/c866fff77d4ce0aacfef9a376439d5218d6ac6.debug - strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc - objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3d/c866fff77d4ce0aacfef9a376439d5218d6ac6.debug debian/kmc/usr/bin/kmc install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/c9 objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_dump debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/c9/52a232807e9da726d522a61bc14fcdf8a78e20.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/c9/52a232807e9da726d522a61bc14fcdf8a78e20.debug @@ -4089,6 +4157,11 @@ chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/ff/a0bab545a135ca590060b59c7e970067a8e7ae.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_tools objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/ff/a0bab545a135ca590060b59c7e970067a8e7ae.debug debian/kmc/usr/bin/kmc_tools + install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3d + objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3d/c866fff77d4ce0aacfef9a376439d5218d6ac6.debug + chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3d/c866fff77d4ce0aacfef9a376439d5218d6ac6.debug + strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc + objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3d/c866fff77d4ce0aacfef9a376439d5218d6ac6.debug debian/kmc/usr/bin/kmc install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/kmc/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/kmc/usr/lib/debug/.dwz @@ -4100,10 +4173,10 @@ rm -f debian/libkmc-dev/DEBIAN/shlibs dh_shlibdeps -a install -d debian/kmc/DEBIAN - dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc debian/kmc/usr/bin/kmc_dump debian/kmc/usr/bin/kmc_tools -dpkg-shlibdeps: warning: debian/kmc/usr/bin/kmc contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin + dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc_dump debian/kmc/usr/bin/kmc_tools debian/kmc/usr/bin/kmc dpkg-shlibdeps: warning: debian/kmc/usr/bin/kmc_tools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/kmc/usr/bin/kmc_dump contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/kmc/usr/bin/kmc contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb install -d debian/libkmc-dev/DEBIAN rm -f debian/kmc.debhelper.log debian/libkmc-dev.debhelper.log @@ -4118,25 +4191,25 @@ install -d debian/.debhelper/kmc/dbgsym-root/DEBIAN dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/.debhelper/kmc/dbgsym-root "-Vsimde:Built-Using=simde (= 0.7.2-4), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=kmc-dbgsym "-DDepends=kmc (= \${binary:Version})" "-DDescription=debug symbols for kmc" "-DBuild-Ids=3dc866fff77d4ce0aacfef9a376439d5218d6ac6 c952a232807e9da726d522a61bc14fcdf8a78e20 ffa0bab545a135ca590060b59c7e970067a8e7ae" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: Depends field of package libkmc-dev: substitution variable ${shlibs:Depends} used, but is not defined + chmod 0644 -- debian/libkmc-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/control dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/kmc "-Vsimde:Built-Using=simde (= 0.7.2-4), " - chmod 0644 -- debian/libkmc-dev/DEBIAN/control chmod 0644 -- debian/kmc/DEBIAN/control make[1]: Leaving directory '/build/kmc-3.1.1+dfsg' dh_md5sums cd debian/kmc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libkmc-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chmod 0644 -- debian/kmc/DEBIAN/md5sums cd debian/.debhelper/kmc/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums dh_builddeb + dpkg-deb --root-owner-group --build debian/libkmc-dev .. dpkg-deb --root-owner-group --build debian/kmc .. dpkg-deb --root-owner-group --build debian/.debhelper/kmc/dbgsym-root .. - dpkg-deb --root-owner-group --build debian/libkmc-dev .. +dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_3.1.1+dfsg-3_armhf.deb'. dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_3.1.1+dfsg-3_armhf.deb'. dpkg-deb: building package 'kmc' in '../kmc_3.1.1+dfsg-3_armhf.deb'. -dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_3.1.1+dfsg-3_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../kmc_3.1.1+dfsg-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4144,12 +4217,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/14535/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/14535/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/26344 and its subdirectories -I: Current time: Mon Jul 19 05:06:22 -12 2021 -I: pbuilder-time-stamp: 1626714382 +I: removing directory /srv/workspace/pbuilder/14535 and its subdirectories +I: Current time: Tue Jul 20 07:41:16 +14 2021 +I: pbuilder-time-stamp: 1626716476