Diff of the two buildlogs: -- --- b1/build.log 2021-07-27 02:06:44.536240043 +0000 +++ b2/build.log 2021-07-27 03:34:49.230871595 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jul 26 13:50:44 -12 2021 -I: pbuilder-time-stamp: 1627350644 +I: Current time: Tue Jul 27 16:09:04 +14 2021 +I: pbuilder-time-stamp: 1627351744 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./mmseqs2_12-113e3+ds-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.YWp6eDwq/trustedkeys.kbx': General error -gpgv: Signature made Fri Feb 12 02:31:54 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.dToi8ML5/trustedkeys.kbx': General error +gpgv: Signature made Sat Feb 13 04:31:54 2021 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mmseqs2_12-113e3+ds-3.dsc @@ -33,135 +33,169 @@ dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/26957/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/19824/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/19824/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/19824/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='8b268ace847740dda263964a8cffc572' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='26957' - PS1='# ' - PS2='> ' + INVOCATION_ID=0035775dd1844fc884c0b49f19832aa2 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=19824 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.UrSNkUFlQG/pbuilderrc_9LmM --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.UrSNkUFlQG/b1 --logfile b1/build.log mmseqs2_12-113e3+ds-3.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.UrSNkUFlQG/pbuilderrc_qOkm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.UrSNkUFlQG/b2 --logfile b2/build.log --extrapackages usrmerge mmseqs2_12-113e3+ds-3.dsc' + SUDO_GID=116 + SUDO_UID=112 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux virt64a 5.10.0-8-arm64 #1 SMP Debian 5.10.46-2 (2021-07-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-armmp #1 SMP Debian 5.10.46-2 (2021-07-20) armv7l GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 24 21:27 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/26957/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 27 16:16 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 25 23:29 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/19824/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -265,7 +299,7 @@ Get: 54 http://deb.debian.org/debian bullseye/main armhf libsimde-dev all 0.7.2-4 [259 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf libzstd-dev armhf 1.4.8+dfsg-2.1 [339 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [185 kB] -Fetched 26.4 MB in 6s (4187 kB/s) +Fetched 26.4 MB in 8s (3215 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -504,8 +538,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (245 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24721 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/mmseqs2-12-113e3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmseqs2_12-113e3+ds-3_source.changes +hostname: Name or service not known +I: Running cd /build/mmseqs2-12-113e3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mmseqs2_12-113e3+ds-3_source.changes dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 12-113e3+ds-3 dpkg-buildpackage: info: source distribution unstable @@ -515,17 +586,17 @@ debian/rules clean dh clean debian/rules override_dh_auto_clean -make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' +make[1]: ingresso nella directory «/build/mmseqs2-12-113e3+ds» dh_auto_clean rm -Rf build-* -make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' +make[1]: uscita dalla directory «/build/mmseqs2-12-113e3+ds» dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch -make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' +make[1]: ingresso nella directory «/build/mmseqs2-12-113e3+ds» dh_auto_configure -- -DVERSION_OVERRIDE=12-113e3+ds-3 -DNATIVE_ARCH=0 cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DVERSION_OVERRIDE=12-113e3\+ds-3 -DNATIVE_ARCH=0 .. -- The CXX compiler identification is GNU 10.2.1 @@ -576,46 +647,57 @@ -- Build files have been written to: /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf -make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' +make[1]: uscita dalla directory «/build/mmseqs2-12-113e3+ds» debian/rules override_dh_auto_build-arch -make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' +make[1]: ingresso nella directory «/build/mmseqs2-12-113e3+ds» dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 -make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 +make[2]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/CMakeFiles /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all -make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/microtar /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/alp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= -Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode/CMakeFiles/cacode.dir/depend.internal". +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/ksw2 /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/microtar/CMakeFiles/microtar.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/microtar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/microtar/CMakeFiles/microtar.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode/CMakeFiles/cacode.dir/depend.internal". +Scanning dependencies of target microtar +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". +Scanning dependencies of target ksw2 +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp/CMakeFiles/alp.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp/CMakeFiles/alp.dir/depend.internal". -Scanning dependencies of target microtar +make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode/CMakeFiles/cacode.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode/CMakeFiles/cacode.dir/depend.internal". Scanning dependencies of target cacode -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» Scanning dependencies of target alp -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build [ 1%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o -[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/microtar.dir/microtar.c.o -c /build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +[ 1%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp +[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp [ 2%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp @@ -624,328 +706,319 @@ cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o /usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» [ 2%] Built target microtar -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/ksw2 /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= -Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". -Scanning dependencies of target ksw2 -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -[ 2%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp -[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp -[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp -[ 3%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp -[ 3%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -[ 3%] Built target cacode make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/data /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/data/CMakeFiles/generated.dir/DependInfo.cmake --color= -[ 4%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/data/CMakeFiles/generated.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/data/CMakeFiles/generated.dir/depend.internal". Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/data/CMakeFiles/generated.dir/depend.internal". Scanning dependencies of target generated -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -[ 4%] Generating ../generated/VTML80.out.h +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +[ 2%] Generating ../generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/VTML80.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/VTML80.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/VTML80.out.h -[ 5%] Generating ../generated/VTML40.out.h +[ 3%] Generating ../generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/VTML40.out.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/VTML40.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/VTML40.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/VTML40.out.h -[ 5%] Generating ../generated/nucleotide.out.h +[ 3%] Generating ../generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/nucleotide.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/nucleotide.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/nucleotide.out.h -[ 6%] Generating ../generated/blosum62.out.h +[ 4%] Generating ../generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blosum62.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blosum62.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blosum62.out.h -[ 6%] Generating ../generated/PAM30.out.h +[ 4%] Generating ../generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/PAM30.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/PAM30.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/PAM30.out.h -[ 7%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +[ 5%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/CovSeqidQscPercMinDiag.lib.h -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/CovSeqidQscPercMinDiag.lib.h -[ 7%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 5%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 7%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +[ 5%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/ExpOpt3_8_polished.cs32.lib.h -[ 8%] Generating ../generated/Library255_may17.lib.h +[ 6%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/Library255_may17.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/Library255_may17.lib.h -[ 8%] Generating ../generated/libPolished_8.lib.h +[ 6%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/libPolished_8.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/libPolished_8.lib.h -[ 9%] Generating ../generated/cs219.lib.h +[ 7%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/cs219.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/cs219.lib.h -[ 9%] Generating ../generated/krona_prelude.html.h +[ 7%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/krona_prelude.html.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/krona_prelude.html.h.tmp +[ 7%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp +[ 7%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/krona_prelude.html.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/krona_prelude.html.h -[ 10%] Generating ../generated/result_viz_prelude.html.zst.h +[ 8%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/result_viz_prelude.html.zst.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/result_viz_prelude.html.zst.h -[ 10%] Generating ../generated/easysearch.sh.h +[ 8%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easysearch.sh.h.tmp +[ 9%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easysearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easysearch.sh.h -[ 10%] Generating ../generated/easycluster.sh.h +[ 9%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easycluster.sh.h.tmp +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easycluster.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easycluster.sh.h -[ 11%] Generating ../generated/easytaxonomy.sh.h +[ 10%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easytaxonomy.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easytaxonomy.sh.h -[ 11%] Generating ../generated/easyrbh.sh.h +[ 10%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easyrbh.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easyrbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/easyrbh.sh.h +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +[ 11%] Built target cacode [ 12%] Generating ../generated/blastp.sh.h +make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastp.sh.h.tmp +Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version/CMakeFiles/version.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version/CMakeFiles/version.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version/CMakeFiles/version.dir/depend.internal". +Scanning dependencies of target version +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastp.sh.h +[ 12%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp [ 12%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastpgp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastpgp.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastpgp.sh.h.tmp +[ 13%] Linking CXX static library libversion.a +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastpgp.sh.h -[ 13%] Generating ../generated/map.sh.h +[ 14%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/map.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/map.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/map.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/map.sh.h -[ 13%] Generating ../generated/rbh.sh.h +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +[ 14%] Generating ../generated/rbh.sh.h +[ 14%] Built target version cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/tinyexpr /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake --color= cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/rbh.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/rbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/rbh.sh.h -[ 14%] Generating ../generated/linclust.sh.h +Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". +Scanning dependencies of target tinyexpr +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +[ 15%] Generating ../generated/linclust.sh.h +[ 15%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/linclust.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/linclust.sh.h.tmp +[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/linclust.sh.h -[ 14%] Generating ../generated/clustering.sh.h +[ 15%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/clustering.sh.h -[ 14%] Generating ../generated/cascaded_clustering.sh.h +[ 15%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/cascaded_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/cascaded_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/cascaded_clustering.sh.h -[ 15%] Generating ../generated/update_clustering.sh.h +[ 16%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/update_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/update_clustering.sh.h -[ 15%] Generating ../generated/searchtargetprofile.sh.h +[ 16%] Generating ../generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/searchtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/searchtargetprofile.sh.h -[ 16%] Generating ../generated/createindex.sh.h -[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +[ 17%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/createindex.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/createindex.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/createindex.sh.h [ 17%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/createtaxdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/createtaxdb.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/createtaxdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/createtaxdb.sh.h [ 18%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/translated_search.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/translated_search.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/translated_search.sh.h [ 18%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/taxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/taxonomy.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/taxonomy.sh.h [ 19%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/taxpercontig.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/taxpercontig.sh.h [ 19%] Generating ../generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/multihitdb.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/multihitdb.sh.h [ 19%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/multihitsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/multihitsearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/multihitsearch.sh.h [ 20%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/enrich.sh.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/enrich.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/enrich.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/enrich.sh.h -[ 20%] Built target ksw2 -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= [ 20%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastn.sh.h -Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version/CMakeFiles/version.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version/CMakeFiles/version.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version/CMakeFiles/version.dir/depend.internal". -Scanning dependencies of target version -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastn.sh.h.tmp -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastn.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/blastn.sh.h -[ 20%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp [ 21%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/searchslicedtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/searchslicedtargetprofile.sh.h -[ 22%] Generating ../generated/linsearch.sh.h -[ 22%] Linking CXX static library libversion.a -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +[ 21%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/linsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/linsearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/linsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/linsearch.sh.h -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -[ 23%] Generating ../generated/databases.sh.h -/usr/bin/ranlib libversion.a +[ 22%] Generating ../generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/databases.sh.h -[ 23%] Built target version -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/tinyexpr /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake --color= -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/databases.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/databases.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/databases.sh.h -Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". -Scanning dependencies of target tinyexpr -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -[ 23%] Generating ../generated/nucleotide_clustering.sh.h +[ 22%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/nucleotide_clustering.sh.h -[ 23%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/nucleotide_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/nucleotide_clustering.sh.h.tmp +[ 23%] Linking C static library libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated/nucleotide_clustering.sh.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -[ 23%] Built target generated -[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp -[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp -[ 25%] Linking C static library libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +[ 23%] Built target generated /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o /usr/bin/ranlib libtinyexpr.a -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -[ 25%] Built target tinyexpr +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp +[ 24%] Built target tinyexpr +[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp +[ 25%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +[ 25%] Built target ksw2 [ 25%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp [ 25%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp [ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp +[ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.hpp:46, @@ -978,6 +1051,20 @@ 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 +/usr/include/c++/10/bits/stl_algo.h: In static member function ‘static double Sls::alp_reg::median(long int, double*)’: +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.hpp:41, from /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.hpp:39, @@ -986,7 +1073,7 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In static member function ‘static double Sls::alp_reg::median(long int, double*)’: +/usr/include/c++/10/bits/stl_algo.h: In static member function ‘static void Sls::alp_reg::find_tetta_general(double (*)(double, void*), void*, double, double, long int, double, std::vector&)’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ @@ -1040,20 +1127,6 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In static member function ‘static void Sls::alp_reg::find_tetta_general(double (*)(double, void*), void*, double, double, long int, double, std::vector&)’: -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1662:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1662 | __heap_select(_RandomAccessIterator __first, @@ -1086,8 +1159,6 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 26%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp [ 27%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp [ 27%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o @@ -1137,23 +1208,25 @@ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» [ 28%] Built target alp make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake --color= Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/CMakeFiles/mmseqs-framework.dir/depend.internal". 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-I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/CompressedA3M.cpp +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -1193,10 +1266,23 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.cpp [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MsaFilter.cpp +[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MultipleAlignment.cpp +In file included from /usr/include/c++/10/vector:72, + from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.h:12, + from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.cpp:3: +/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Matcher::result_t}; _Tp = Matcher::result_t; _Alloc = std::allocator]’: +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In static member function ‘static void Matcher::readAlignmentResults(std::vector&, char*, bool)’: +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/PSSMCalculator.cpp In file included from /usr/include/c++/10/vector:72, from /build/mmseqs2-12-113e3+ds/src/commons/Util.h:7, from /build/mmseqs2-12-113e3+ds/src/commons/Debug.h:5, @@ -1215,6 +1301,8 @@ 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 +[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/StripedSmithWaterman.cpp In file included from /usr/include/c++/10/algorithm:62, from /build/mmseqs2-12-113e3+ds/lib/simd/simd.h:9, from /build/mmseqs2-12-113e3+ds/src/commons/ScoreMatrix.h:7, @@ -1228,21 +1316,12 @@ | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 -In file included from /usr/include/c++/10/vector:72, - from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.h:12, - from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.cpp:3: -/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Matcher::result_t}; _Tp = Matcher::result_t; _Alloc = std::allocator]’: -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In static member function ‘static void Matcher::readAlignmentResults(std::vector&, char*, bool)’: -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/BandedNucleotideAligner.cpp In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/mmseqs2-12-113e3+ds/lib/simd/simd.h:9, @@ -1255,15 +1334,13 @@ /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ -[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons 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-D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 -[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/PSSMCalculator.cpp In file included from /usr/include/c++/10/algorithm:62, from /build/mmseqs2-12-113e3+ds/lib/simd/simd.h:9, from /build/mmseqs2-12-113e3+ds/src/commons/ScoreMatrix.h:7, @@ -1319,12 +1396,6 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/StripedSmithWaterman.cpp -[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 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src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy 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-I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Clustering.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp In file included from /usr/include/c++/10/vector:72, from /build/mmseqs2-12-113e3+ds/src/alignment/DistanceCalculator.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp:1: @@ -1399,10 +1472,10 @@ /usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1666 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/A3MReader.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp /usr/include/c++/10/bits/stl_algo.h: In function ‘_Z17doRescorediagonalR10ParametersR8DBWriterR8DBReaderIjEjj._omp_fn.0’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, @@ -1423,8 +1496,6 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/BaseMatrix.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o @@ -1492,8 +1563,6 @@ cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde 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-I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -1632,18 +1701,20 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Indexer.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexBuilder.cpp:1: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/KmerGenerator.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/Main.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:6, @@ -1675,12 +1746,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.cpp:1: @@ -1694,6 +1759,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/prefiltering/Prefiltering.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.cpp:3: @@ -1736,6 +1807,8 @@ cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/ungappedprefilter.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.h:10, from /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp:4: @@ -1774,8 +1847,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/combinepvalperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o @@ -1896,6 +1967,8 @@ | ~~^~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignall.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -1904,8 +1977,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/alignbykmer.cpp:8: @@ -1935,6 +2006,8 @@ cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convert2fasta.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/convertalignments.cpp:7: @@ -1942,8 +2015,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertca3m.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o @@ -1958,6 +2029,8 @@ cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp:4: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: @@ -1977,8 +2050,6 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp:10: @@ -1999,6 +2070,10 @@ /usr/include/c++/10/bits/stl_algo.h:1318:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp In file included from /usr/include/c++/10/vector:72, from /build/mmseqs2-12-113e3+ds/src/commons/Util.h:7, from /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp:1: @@ -2284,8 +2359,13 @@ | ~~~~~~~~~~~~~~~~~~ 2787 | __comp); | ~~~~~~~ -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘_BidirectionalIterator1 std::__rotate_adaptive(_BidirectionalIterator1, _BidirectionalIterator1, _BidirectionalIterator1, _Distance, _Distance, _BidirectionalIterator2, _Distance) [with _BidirectionalIterator1 = __gnu_cxx::__normal_iterator >; _BidirectionalIterator2 = Matcher::result_t*; _Distance = int]’: /usr/include/c++/10/bits/stl_algo.h:2389:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2389 | __rotate_adaptive(_BidirectionalIterator1 __first, @@ -2327,7 +2407,7 @@ | ~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/view.cpp:2: + from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { @@ -2436,6 +2516,8 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp In file included from /usr/include/c++/10/algorithm:62, from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp:3: @@ -2448,21 +2530,11 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 5038 | _DistanceType(__buf.size()), __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/createtsv.cpp:6: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/diffseqdbs.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractdomains.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractalignedregion.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o In file included from /usr/include/c++/10/algorithm:62, from /build/mmseqs2-12-113e3+ds/lib/simd/simd.h:9, from /build/mmseqs2-12-113e3+ds/src/commons/ScoreMatrix.h:7, @@ -2476,6 +2548,7 @@ /usr/include/c++/10/bits/stl_algo.h:2650:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:2650:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:2650:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp /usr/include/c++/10/bits/stl_algo.h: In function ‘_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = Matcher::result_t*; _OutputIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_algo.h:2650:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘_RandomAccessIterator std::_V2::__rotate(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >]’: @@ -2505,8 +2578,8 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2532 | __len1 - __len11, __len2 - __len22, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp In file included from /usr/include/c++/10/vector:72, from /build/mmseqs2-12-113e3+ds/src/commons/Parameters.h:8, from /build/mmseqs2-12-113e3+ds/src/util/expandaln.cpp:1: @@ -2929,6 +3002,12 @@ /usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1666 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/filterdb.cpp +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/gff2db.cpp /usr/include/c++/10/bits/stl_algo.h: In function ‘_Z9expandalniPPKcRK7Commandb._omp_fn.0’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, @@ -3242,24 +3321,18 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/filterdb.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust 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-I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/renamedbkeys.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/masksequence.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp In file included from /usr/include/c++/10/algorithm:62, from /build/mmseqs2-12-113e3+ds/lib/simd/simd.h:9, from /build/mmseqs2-12-113e3+ds/src/commons/ScoreMatrix.h:7, @@ -3298,6 +3371,8 @@ 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeclusters.cpp /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__merge_sort_with_buffer(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Pointer = std::pair >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_algo.h:2717:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 2717 | __merge_sort_with_buffer(_RandomAccessIterator __first, @@ -3352,8 +3427,8 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2532 | __len1 - __len11, __len2 - __len22, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/maskbygff.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeresultsbyset.cpp /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_algo.h:2773:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 2773 | __inplace_stable_sort(_RandomAccessIterator __first, @@ -3879,12 +3954,10 @@ 3748 | shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~ /usr/include/c++/10/bits/stl_algo.h:3748:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeclusters.cpp -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergeresultsbyset.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2profile.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/util/mergedbs.cpp:1: @@ -3892,8 +3965,38 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2profile.cpp +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp +In file included from /usr/include/c++/10/vector:72, + from /build/mmseqs2-12-113e3+ds/src/commons/Util.h:7, + from /build/mmseqs2-12-113e3+ds/src/commons/ProfileStates.h:6, + from /build/mmseqs2-12-113e3+ds/src/commons/SubstitutionMatrix.h:13, + from /build/mmseqs2-12-113e3+ds/src/alignment/MsaFilter.h:9, + from /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp:1: +/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Matcher::result_t&}; _Tp = Matcher::result_t; _Alloc = std::allocator]’: +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp +/usr/include/c++/10/bits/vector.tcc: In function ‘_Z10msa2resultiPPKcRK7Command._omp_fn.1’: +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, + from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp /usr/include/c++/10/bits/stl_algo.h: In function ‘_BidirectionalIterator1 std::__rotate_adaptive(_BidirectionalIterator1, _BidirectionalIterator1, _BidirectionalIterator1, _Distance, _Distance, _BidirectionalIterator2, _Distance) [with _BidirectionalIterator1 = __gnu_cxx::__normal_iterator >*, std::vector > > >; _BidirectionalIterator2 = std::pair >*; _Distance = int]’: /usr/include/c++/10/bits/stl_algo.h:2389:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 2389 | __rotate_adaptive(_BidirectionalIterator1 __first, @@ -4063,38 +4166,6 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/mvdb.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, - from /build/mmseqs2-12-113e3+ds/src/util/countkmer.cpp:7: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/mmseqs2-12-113e3+ds/src/commons/Util.h:7, - from /build/mmseqs2-12-113e3+ds/src/commons/ProfileStates.h:6, - from /build/mmseqs2-12-113e3+ds/src/commons/SubstitutionMatrix.h:13, - from /build/mmseqs2-12-113e3+ds/src/alignment/MsaFilter.h:9, - from /build/mmseqs2-12-113e3+ds/src/util/msa2result.cpp:1: -/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Matcher::result_t&}; _Tp = Matcher::result_t; _Alloc = std::allocator]’: -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 -/usr/include/c++/10/bits/vector.tcc: In function ‘_Z10msa2resultiPPKcRK7Command._omp_fn.1’: -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/prefixid.cpp -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2cs.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/profile2pssm.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o @@ -4121,6 +4192,8 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp /usr/include/c++/10/bits/vector.tcc: In function ‘_Z10result2msaiPPKcRK7Command._omp_fn.0’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); @@ -4135,6 +4208,10 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 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-I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/reverseseq.cpp In file included from /usr/include/c++/10/vector:72, from /build/mmseqs2-12-113e3+ds/src/commons/Util.h:7, from /build/mmseqs2-12-113e3+ds/src/commons/ProfileStates.h:6, @@ -4152,18 +4229,14 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated 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-I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/reverseseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/rmdb.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:7: @@ -4183,12 +4256,12 @@ /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitsequence.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/subtractdbs.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp In file included from /usr/include/c++/10/vector:72, from /build/mmseqs2-12-113e3+ds/src/commons/Parameters.h:8, from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:1: @@ -4240,32 +4313,6 @@ /usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1666 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function ‘_Z10sortresultiPPKcRK7Command._omp_fn.0’: -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/mmseqs2-12-113e3+ds/src/commons/Parameters.h:8, - from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:1: -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizealis.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp In file included from /usr/include/c++/10/algorithm:62, from /build/mmseqs2-12-113e3+ds/lib/simd/simd.h:9, from /build/mmseqs2-12-113e3+ds/src/commons/ScoreMatrix.h:7, @@ -4299,16 +4346,38 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2532 | __len1 - __len11, __len2 - __len22, __comp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp +/usr/include/c++/10/bits/stl_algo.h: In function ‘_Z10sortresultiPPKcRK7Command._omp_fn.0’: +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/mmseqs2-12-113e3+ds/src/commons/Parameters.h:8, + from /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp:1: +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeheaders.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizeresult.cpp /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__inplace_stable_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_algo.h:2773:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2773 | __inplace_stable_sort(_RandomAccessIterator __first, @@ -5173,29 +5242,14 @@ /usr/include/c++/10/bits/stl_algo.h:2650:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:2650:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:2650:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, - from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: -/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] - 405 | for (unsigned int j = 0; j < entrySize; j++) { - | ~~^~~~~~~~~~~ -In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: -/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: -/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] - 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) - | ^ -/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ - 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ - 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); - | ^~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function ‘_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = Domain*; _OutputIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: -/usr/include/c++/10/bits/stl_algo.h:2650:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp +/usr/include/c++/10/bits/stl_algo.h: In function ‘_OutputIterator std::__move_merge(_InputIterator, _InputIterator, _InputIterator, _InputIterator, _OutputIterator, _Compare) [with _InputIterator = Domain*; _OutputIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: +/usr/include/c++/10/bits/stl_algo.h:2650:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translatenucs.cpp /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, @@ -5521,6 +5575,25 @@ | ~~~~~~~~~~~~~~~~~~ 2787 | __comp); | ~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:4, + from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, + from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: +/build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] + 405 | for (unsigned int j = 0; j < entrySize; j++) { + | ~~^~~~~~~~~~~ +In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/QueryMatcher.h:11, + from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:7: +/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h: At global scope: +/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] + 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) + | ^ +/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ + 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/mmseqs2-12-113e3+ds/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ + 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); + | ^~~~~~~~~~~~~~~~~ In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/commons/IndexReader.h:6, from /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.h:6, @@ -5530,21 +5603,6 @@ 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, - from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.h:12, - from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:1: -/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Matcher::result_t&}; _Tp = Matcher::result_t; _Alloc = std::allocator]’: -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/algorithm:62, - from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:1: -/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 1839 | __insertion_sort(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 -In file included from /usr/include/c++/10/vector:72, from /build/mmseqs2-12-113e3+ds/src/commons/Parameters.h:8, from /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp:1: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Domain&}; _Tp = Domain; _Alloc = std::allocator]’: @@ -5552,10 +5610,6 @@ 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: -/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, - | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /build/mmseqs2-12-113e3+ds/src/commons/Parameters.h:8, from /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp:1: @@ -5563,30 +5617,6 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algo.h:61, - from /usr/include/c++/10/algorithm:62, - from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:1: -/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Matcher::result_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: -/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, - | ^~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: -/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, - | ^~~~~~~~~~~ -/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 -In file included from /usr/include/c++/10/algorithm:62, - from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.h:11, - from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:1: -/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 1945 | __introsort_loop(_RandomAccessIterator __first, - | ^~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 -/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /build/mmseqs2-12-113e3+ds/src/commons/Parameters.h:8, from /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp:1: @@ -5594,9 +5624,6 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 1666 | std::__make_heap(__first, __middle, __comp); - | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/10/algorithm:62, from /build/mmseqs2-12-113e3+ds/lib/simd/simd.h:9, @@ -5615,6 +5642,21 @@ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 1435 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.h:12, + from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:1: +/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Matcher::result_t&}; _Tp = Matcher::result_t; _Alloc = std::allocator]’: +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/algorithm:62, + from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.h:11, + from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:1: +/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 1839 | __insertion_sort(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__merge_adaptive(_BidirectionalIterator, _BidirectionalIterator, _BidirectionalIterator, _Distance, _Distance, _Pointer, _Distance, _Compare) [with _BidirectionalIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Pointer = Domain*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:2427:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2427 | __merge_adaptive(_BidirectionalIterator __first, @@ -5643,26 +5685,27 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2480 | __buffer_size, __comp); | ~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h: In function ‘_Z6doswapR10Parametersb._omp_fn.4’: -/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 1974 | std::__introsort_loop(__first, __last, - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ - 1975 | std::__lg(__last - __first) * 2, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1976 | __comp); - | ~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 1891 | std::__insertion_sort(__first, __last, __comp); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp +/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: +/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, + | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, - from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.h:12, + from /build/mmseqs2-12-113e3+ds/src/commons/Util.h:7, + from /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp:1: +/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Matcher::result_t&}; _Tp = Matcher::result_t; _Alloc = std::allocator]’: +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algo.h:61, + from /usr/include/c++/10/algorithm:62, + from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.h:11, from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:1: -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Matcher::result_t; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: +/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, + | ^~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__stable_sort_adaptive(_RandomAccessIterator, _RandomAccessIterator, _Pointer, _Distance, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Pointer = Domain*; _Distance = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/10/bits/stl_algo.h:2744:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2744 | __stable_sort_adaptive(_RandomAccessIterator __first, @@ -5696,13 +5739,11 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~ 2767 | __comp); | ~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /build/mmseqs2-12-113e3+ds/src/commons/Util.h:7, - from /build/mmseqs2-12-113e3+ds/src/util/transitivealign.cpp:1: -/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Matcher::result_t&}; _Tp = Matcher::result_t; _Alloc = std::allocator]’: -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: +/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, + | ^~~~~~~~~~~ +/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/10/vector:72, from /build/mmseqs2-12-113e3+ds/src/commons/Parameters.h:8, from /build/mmseqs2-12-113e3+ds/src/util/summarizetabs.cpp:1: @@ -5732,6 +5773,14 @@ 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 +In file included from /usr/include/c++/10/algorithm:62, + from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.h:11, + from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:1: +/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 1945 | __introsort_loop(_RandomAccessIterator __first, + | ^~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.h:11, @@ -5740,6 +5789,12 @@ /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 1666 | std::__make_heap(__first, __middle, __comp); + | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, @@ -5759,6 +5814,26 @@ /usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1666 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h: In function ‘_Z6doswapR10Parametersb._omp_fn.4’: +/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 1974 | std::__introsort_loop(__first, __last, + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ + 1975 | std::__lg(__last - __first) * 2, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1976 | __comp); + | ~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 1891 | std::__insertion_sort(__first, __last, __comp); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.h:12, + from /build/mmseqs2-12-113e3+ds/src/util/swapresults.cpp:1: +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘_Z15transitivealigniPPKcRK7Command._omp_fn.0’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, @@ -5779,10 +5854,6 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translatenucs.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/translateaa.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/tsv2db.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o @@ -5807,18 +5878,18 @@ cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyCluster.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: + from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/mmseqs2-12-113e3+ds/src/workflow/EasyRbh.cpp:3: + from /build/mmseqs2-12-113e3+ds/src/workflow/EasySearch.cpp:3: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { @@ -5841,14 +5912,14 @@ cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Taxonomy.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/TaxPerContig.cpp +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o +cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyTaxonomy.cpp In file included from /build/mmseqs2-12-113e3+ds/src/prefiltering/PrefilteringIndexReader.h:5, from /build/mmseqs2-12-113e3+ds/src/workflow/Search.cpp:6: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /build/mmseqs2-12-113e3+ds/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyTaxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g 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Dependee "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src/CMakeFiles/mmseqs.dir/depend.internal". Scanning dependencies of target mmseqs -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» make -f src/CMakeFiles/mmseqs.dir/build.make src/CMakeFiles/mmseqs.dir/build -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[4]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» [100%] Building CXX object src/CMakeFiles/mmseqs.dir/mmseqs.cpp.o cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs.dir/mmseqs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/mmseqs.cpp [100%] Linking CXX executable mmseqs cd /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -std=c++1y -fsigned-char -D_GNU_SOURCE=1 -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp CMakeFiles/mmseqs.dir/mmseqs.cpp.o -o mmseqs libmmseqs-framework.a version/libversion.a /usr/lib/arm-linux-gnueabihf/libatomic.so.1 ../lib/tinyexpr/libtinyexpr.a -lm -lzstd ../lib/microtar/libmicrotar.a -lgzstream -lz -lbz2 -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[4]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» [100%] Built target mmseqs -make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[3]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf/CMakeFiles 0 -make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' +make[2]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +make[1]: uscita dalla directory «/build/mmseqs2-12-113e3+ds» dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install-arch -make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' +make[1]: ingresso nella directory «/build/mmseqs2-12-113e3+ds» dh_auto_install - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" -make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" +make[2]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall -make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' -make[3]: Nothing to be done for 'preinstall'. -make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[3]: ingresso nella directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» +make[3]: Nessuna operazione da eseguire per «preinstall». +make[3]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs -make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf' +make[2]: uscita dalla directory «/build/mmseqs2-12-113e3+ds/obj-arm-linux-gnueabihf» dh_install -pmmseqs2 usr/bin/mmseqs usr/bin/ -make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' +make[1]: uscita dalla directory «/build/mmseqs2-12-113e3+ds» debian/rules override_dh_install-arch -make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' +make[1]: ingresso nella directory «/build/mmseqs2-12-113e3+ds» dh_install --arch mkdir -p debian/mmseqs2/usr/lib/mmseqs2/test cp src/test/*.index debian/mmseqs2/usr/lib/mmseqs2/test/ @@ -5912,15 +5983,15 @@ rm -rf debian/mmseqs2/usr/lib/mmseqs2/test/CMakeFiles \ debian/mmseqs2/usr/lib/mmseqs2/test/*.cmake \ debian/mmseqs2/usr/lib/mmseqs2/test/Makefile -make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' +make[1]: uscita dalla directory «/build/mmseqs2-12-113e3+ds» debian/rules override_dh_install-indep -make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' +make[1]: ingresso nella directory «/build/mmseqs2-12-113e3+ds» dh_install --indep # We also remove unneeded files & folders like CMake rm -rf debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/*.lib \ debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/CovSeqidQscPercMinDiag.out \ debian/mmseqs2-examples/usr/share/doc/mmseqs2/example-data/CovSeqidQscPercMinDiagTargetCov.out -make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' +make[1]: uscita dalla directory «/build/mmseqs2-12-113e3+ds» dh_installdocs dh_installchangelogs dh_installman @@ -5937,14 +6008,14 @@ dpkg-shlibdeps: warning: debian/mmseqs2/usr/bin/mmseqs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb debian/rules override_dh_gencontrol -make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' +make[1]: ingresso nella directory «/build/mmseqs2-12-113e3+ds» dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-4), " -make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' +make[1]: uscita dalla directory «/build/mmseqs2-12-113e3+ds» dh_md5sums dh_builddeb -dpkg-deb: building package 'mmseqs2' in '../mmseqs2_12-113e3+ds-3_armhf.deb'. -dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_12-113e3+ds-3_armhf.deb'. -dpkg-deb: building package 'mmseqs2-examples' in '../mmseqs2-examples_12-113e3+ds-3_all.deb'. +dpkg-deb: generazione del pacchetto "mmseqs2-examples" in "../mmseqs2-examples_12-113e3+ds-3_all.deb". +dpkg-deb: generazione del pacchetto "mmseqs2-dbgsym" in "../mmseqs2-dbgsym_12-113e3+ds-3_armhf.deb". +dpkg-deb: generazione del pacchetto "mmseqs2" in "../mmseqs2_12-113e3+ds-3_armhf.deb". dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mmseqs2_12-113e3+ds-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -5952,12 +6023,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/19824/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/19824/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/26957 and its subdirectories -I: Current time: Mon Jul 26 14:06:39 -12 2021 -I: pbuilder-time-stamp: 1627351599 +I: removing directory /srv/workspace/pbuilder/19824 and its subdirectories +I: Current time: Tue Jul 27 17:34:43 +14 2021 +I: pbuilder-time-stamp: 1627356884